Wall clock time and date at job start Wed Apr 1 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99982 * 2 1 4 4 C 1.53001 * 109.47462 * 270.00251 * 3 2 1 5 5 H 1.08996 * 109.47300 * 305.00347 * 4 3 2 6 6 O 1.42902 * 109.47024 * 64.99864 * 4 3 2 7 7 C 1.52991 * 109.47374 * 184.99919 * 4 3 2 8 8 N 1.46503 * 109.47402 * 180.02562 * 7 4 3 9 9 C 1.36937 * 120.00301 * 179.72080 * 8 7 4 10 10 H 1.07997 * 119.99686 * 0.28388 * 9 8 7 11 11 C 1.38808 * 120.00235 * 180.27305 * 9 8 7 12 12 N 1.31624 * 119.99952 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00196 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47040 * 90.00299 * 13 11 9 15 15 H 1.48499 * 109.46946 * 210.00119 * 13 11 9 16 16 H 1.48499 * 109.47001 * 330.00369 * 13 11 9 17 17 C 1.34773 * 119.99946 * 180.02562 * 2 1 3 18 18 O 1.21590 * 119.99566 * 175.71867 * 17 2 1 19 19 C 1.47572 * 120.00135 * 355.71451 * 17 2 1 20 20 C 1.39737 * 120.13447 * 48.46156 * 19 17 2 21 21 C 1.37750 * 119.92435 * 180.02562 * 20 19 17 22 22 C 1.38735 * 120.20108 * 359.97438 * 21 20 19 23 23 F 1.35099 * 119.85682 * 180.02562 * 22 21 20 24 24 C 1.38588 * 120.27805 * 359.97438 * 22 21 20 25 25 Cl 1.73593 * 119.96235 * 179.97438 * 24 22 21 26 26 C 1.38293 * 120.07087 * 359.72204 * 24 22 21 27 27 F 1.35094 * 120.10316 * 180.29996 * 26 24 22 28 28 H 1.08993 * 109.47445 * 95.04466 * 1 2 3 29 29 H 1.08996 * 109.46936 * 215.05061 * 1 2 3 30 30 H 1.09003 * 109.46784 * 335.04655 * 1 2 3 31 31 H 1.08998 * 109.47109 * 150.00183 * 3 2 1 32 32 H 1.09000 * 109.47225 * 30.00503 * 3 2 1 33 33 H 0.96704 * 114.00109 * 59.99842 * 6 4 3 34 34 H 1.08996 * 109.47407 * 59.99999 * 7 4 3 35 35 H 1.09005 * 109.47539 * 299.99969 * 7 4 3 36 36 H 0.97003 * 119.99760 * 0.02562 * 8 7 4 37 37 H 0.96999 * 120.00090 * 179.97438 * 12 11 9 38 38 H 1.08000 * 120.04034 * 0.02562 * 20 19 17 39 39 H 1.07995 * 119.89263 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 2.9641 0.9133 -1.9816 6 8 1.2060 1.9937 -2.0813 7 6 3.3237 2.9681 -1.4443 8 7 3.5673 3.3915 -2.8255 9 6 4.3230 4.5055 -3.0770 10 1 4.7432 5.0693 -2.2573 11 6 4.5491 4.9098 -4.3855 12 7 4.0368 4.2228 -5.3845 13 14 5.5805 6.4290 -4.7286 14 1 7.0067 6.0384 -4.8655 15 1 5.1189 7.0666 -5.9878 16 1 5.4359 7.3895 -3.6054 17 6 2.1388 -1.1672 -0.0005 18 8 3.3522 -1.1685 -0.0791 19 6 1.4041 -2.4435 0.0944 20 6 0.3032 -2.6823 -0.7324 21 6 -0.3798 -3.8750 -0.6398 22 6 0.0222 -4.8405 0.2718 23 9 -0.6524 -6.0079 0.3564 24 6 1.1135 -4.6128 1.0951 25 17 1.6090 -5.8263 2.2333 26 6 1.8113 -3.4220 1.0073 27 9 2.8788 -3.2019 1.8054 28 1 -0.3634 -0.0904 -1.0236 29 1 -0.3633 -0.8413 0.5902 30 1 -0.3633 0.9318 0.4336 31 1 3.1499 1.1384 0.5138 32 1 1.6085 2.0284 0.5139 33 1 0.6954 2.6950 -1.6541 34 1 4.2745 2.7522 -0.9570 35 1 2.8120 3.7655 -0.9052 36 1 3.1897 2.8853 -3.5617 37 1 4.1945 4.5056 -6.2989 38 1 -0.0118 -1.9328 -1.4433 39 1 -1.2303 -4.0592 -1.2793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278803610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:22 Heat of formation + Delta-G solvation = -153.244641 kcal Electronic energy + Delta-G solvation = -27862.753538 eV Core-core repulsion = 23274.356355 eV Total energy + Delta-G solvation = -4588.397183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.37424 -50.28081 -41.55786 -39.71982 -38.74269 -37.84700 -36.52337 -35.80652 -33.26935 -32.50248 -31.93587 -30.67337 -27.95389 -27.20864 -25.26854 -24.53154 -24.05326 -22.70763 -21.10277 -19.49883 -19.24450 -18.89289 -18.66079 -17.85821 -17.56013 -17.15487 -17.04697 -16.81024 -16.58180 -16.43976 -16.20489 -16.13509 -15.67994 -15.34938 -15.09697 -14.79212 -14.35482 -14.13097 -13.98545 -13.91096 -13.87885 -13.65726 -13.34998 -13.00881 -12.91128 -12.81734 -12.74564 -12.44852 -12.33357 -12.17420 -12.01706 -11.81710 -11.37659 -11.06476 -10.98287 -10.15883 -10.11904 -9.65185 -9.01522 -7.94932 -5.24785 -0.73934 -0.46222 0.57455 1.33267 1.46643 1.49344 1.57491 1.74744 2.02601 2.35433 2.55523 2.93895 3.10112 3.36540 3.37902 3.50281 3.56163 3.75851 3.94604 4.07830 4.18388 4.30064 4.30655 4.46541 4.47288 4.56719 4.60647 4.70449 4.74655 4.77110 4.93412 5.00325 5.20819 5.26934 5.40594 5.47395 6.17132 6.26104 6.89179 6.93811 7.32628 8.08828 8.31640 9.28546 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.024385 B = 0.002091 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.964805 B =13390.505410 C =13751.568520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.591 5.591 3 C 0.096 3.904 4 C 0.106 3.894 5 H 0.064 0.936 6 O -0.557 6.557 7 C 0.122 3.878 8 N -0.741 5.741 9 C -0.247 4.247 10 H 0.077 0.923 11 C -0.078 4.078 12 N -0.970 5.970 13 Si 0.976 3.024 14 H -0.290 1.290 15 H -0.294 1.294 16 H -0.266 1.266 17 C 0.551 3.449 18 O -0.570 6.570 19 C -0.169 4.169 20 C -0.012 4.012 21 C -0.129 4.129 22 C 0.161 3.839 23 F -0.113 7.113 24 C -0.134 4.134 25 Cl -0.029 7.029 26 C 0.166 3.834 27 F -0.123 7.123 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.385 0.615 34 H 0.020 0.980 35 H 0.043 0.957 36 H 0.375 0.625 37 H 0.251 0.749 38 H 0.185 0.815 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.553 -18.523 16.381 30.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.321 5.321 3 C -0.027 4.027 4 C 0.045 3.955 5 H 0.082 0.918 6 O -0.364 6.364 7 C -0.005 4.005 8 N -0.384 5.384 9 C -0.379 4.379 10 H 0.095 0.905 11 C -0.270 4.270 12 N -0.620 5.620 13 Si 0.805 3.195 14 H -0.217 1.217 15 H -0.220 1.220 16 H -0.190 1.190 17 C 0.339 3.661 18 O -0.450 6.450 19 C -0.174 4.174 20 C -0.030 4.030 21 C -0.147 4.147 22 C 0.140 3.860 23 F -0.091 7.091 24 C -0.163 4.163 25 Cl 0.000 7.000 26 C 0.145 3.855 27 F -0.101 7.101 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.143 0.857 33 H 0.234 0.766 34 H 0.038 0.962 35 H 0.061 0.939 36 H 0.207 0.793 37 H 0.060 0.940 38 H 0.202 0.798 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -16.590 -18.968 16.173 29.943 hybrid contribution 1.085 0.596 0.066 1.239 sum -15.505 -18.372 16.238 29.011 Atomic orbital electron populations 1.22402 0.76080 1.05434 1.03778 1.47683 1.09040 1.04321 1.71057 1.22180 0.99007 0.85429 0.96100 1.22130 0.84764 0.95300 0.93293 0.91756 1.86574 1.31736 1.59919 1.58175 1.21440 0.97102 0.95173 0.86811 1.42450 1.61730 1.31411 1.02809 1.19663 1.23268 1.02830 0.92155 0.90476 1.25635 1.03066 1.02771 0.95550 1.69849 1.51077 1.42758 0.98358 0.85100 0.77957 0.79186 0.77265 1.21684 1.22023 1.19048 1.18308 0.86586 0.84462 0.76767 1.90865 1.15568 1.87626 1.50917 1.19923 1.00969 0.94797 1.01667 1.21627 0.89058 0.97610 0.94739 1.21551 1.03336 0.91143 0.98689 1.17444 0.89485 0.83621 0.95419 1.91608 1.77805 1.44782 1.94925 1.20910 1.00880 0.93020 1.01469 1.98416 1.90808 1.52705 1.58084 1.17144 0.85050 0.92308 0.91042 1.91582 1.52750 1.94623 1.71109 0.90208 0.89567 0.88183 0.90391 0.85677 0.76583 0.96190 0.93924 0.79316 0.94004 0.79790 0.78169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.62 8.69 127.77 1.11 1.74 16 2 N -0.59 -11.86 2.84 -850.52 -2.41 -14.27 16 3 C 0.10 2.19 5.07 86.38 0.44 2.62 16 4 C 0.11 3.31 3.30 30.59 0.10 3.41 16 5 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 6 O -0.56 -15.98 12.64 -148.98 -1.88 -17.86 16 7 C 0.12 4.74 5.92 86.38 0.51 5.25 16 8 N -0.74 -38.52 5.49 -343.46 -1.89 -40.41 16 9 C -0.25 -14.05 9.99 84.03 0.84 -13.21 16 10 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 11 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 12 N -0.97 -60.86 13.06 21.65 0.28 -60.57 16 13 Si 0.98 46.67 29.55 68.60 2.03 48.69 16 14 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 15 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 C 0.55 14.44 7.02 86.71 0.61 15.05 16 18 O -0.57 -21.00 16.23 -4.00 -0.06 -21.07 16 19 C -0.17 -3.28 4.91 -20.05 -0.10 -3.38 16 20 C -0.01 -0.13 7.77 22.52 0.17 0.05 16 21 C -0.13 -0.95 10.00 22.27 0.22 -0.72 16 22 C 0.16 2.08 7.28 22.47 0.16 2.25 16 23 F -0.11 -1.53 16.82 44.97 0.76 -0.77 16 24 C -0.13 -2.41 6.32 22.37 0.14 -2.27 16 25 Cl -0.03 -0.55 28.26 -2.72 -0.08 -0.62 16 26 C 0.17 3.60 7.23 22.68 0.16 3.76 16 27 F -0.12 -3.35 16.05 44.97 0.72 -2.63 16 28 H 0.08 0.66 7.04 -2.39 -0.02 0.65 16 29 H 0.09 0.56 6.27 -2.39 -0.01 0.55 16 30 H 0.10 0.59 7.84 -2.39 -0.02 0.57 16 31 H 0.08 2.09 7.48 -2.39 -0.02 2.07 16 32 H 0.13 1.85 7.86 -2.39 -0.02 1.84 16 33 H 0.39 7.91 9.05 -74.05 -0.67 7.24 16 34 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.37 21.29 7.54 -92.71 -0.70 20.59 16 37 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.18 1.14 6.25 -2.91 -0.02 1.13 16 39 H 0.20 -0.03 8.06 -2.91 -0.02 -0.06 16 Total: -1.00 -80.73 359.21 2.08 -78.65 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -0.23 Total: 20.42 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 4.84 Total: 10.44 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -4.02 Total: -115.25 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -1.95 Total: -38.93 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 1.48 Total: -3.40 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.62 kcal Total: -80.73 2.08 -78.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278803610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.592 kcal (2) G-P(sol) polarization free energy of solvation -80.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds