Wall clock time and date at job start Wed Apr 1 2020 05:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00146 * 2 1 4 4 H 1.48493 * 109.47203 * 240.00112 * 3 2 1 5 5 H 1.48502 * 109.46685 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46988 * 119.99437 * 3 2 1 7 7 C 1.37878 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00318 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99901 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47487 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47496 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47360 * 180.02562 * 11 10 9 13 13 O 1.21286 * 119.99840 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00166 * 179.97438 * 12 11 10 15 15 S 1.65599 * 119.99969 * 184.89651 * 14 12 11 16 16 O 1.42097 * 106.40293 * 48.12435 * 15 14 12 17 17 O 1.42104 * 106.40131 * 181.04076 * 15 14 12 18 18 C 1.76193 * 107.21979 * 294.58361 * 15 14 12 19 19 C 1.36105 * 120.12888 * 114.90595 * 18 15 14 20 20 C 1.39316 * 121.06746 * 179.97438 * 19 18 15 21 21 C 1.36184 * 120.87013 * 359.97438 * 20 19 18 22 22 C 1.40387 * 119.61263 * 0.02562 * 21 20 19 23 23 C 1.40771 * 121.38881 * 179.97438 * 22 21 20 24 24 C 1.36584 * 118.15346 * 179.09125 * 23 22 21 25 25 C 1.39340 * 119.93384 * 0.87993 * 24 23 22 26 26 N 1.31087 * 121.75110 * 359.39862 * 25 24 23 27 27 C 1.33686 * 121.32101 * 0.02562 * 26 25 24 28 28 H 0.96997 * 119.99955 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47132 * 59.99707 * 9 7 2 30 30 H 1.08995 * 109.47051 * 300.00241 * 9 7 2 31 31 H 1.08998 * 109.47092 * 59.99783 * 10 9 7 32 32 H 1.09004 * 109.47383 * 300.00081 * 10 9 7 33 33 H 1.08998 * 109.47403 * 59.99636 * 11 10 9 34 34 H 1.09005 * 109.46544 * 299.99672 * 11 10 9 35 35 H 0.96999 * 120.00070 * 4.89486 * 14 12 11 36 36 H 1.08001 * 119.46863 * 0.02562 * 19 18 15 37 37 H 1.07998 * 119.56881 * 180.02562 * 20 19 18 38 38 H 1.07998 * 120.19296 * 179.97438 * 21 20 19 39 39 H 1.08008 * 120.92243 * 0.02562 * 23 22 21 40 40 H 1.07994 * 120.03553 * 180.27688 * 24 23 22 41 41 H 1.08000 * 119.12327 * 179.40919 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 -0.0001 12 6 2.4597 -6.1326 0.0005 13 8 3.6521 -5.9109 0.0009 14 7 2.0105 -7.4032 0.0006 15 16 3.0816 -8.6601 0.1237 16 8 3.9491 -8.3437 1.2038 17 8 2.3096 -9.8519 0.0705 18 6 4.0737 -8.6444 -1.3323 19 6 5.4079 -8.3893 -1.2471 20 6 6.2108 -8.3727 -2.3856 21 6 5.6816 -8.6121 -3.6173 22 6 4.3090 -8.8789 -3.7428 23 6 3.7228 -9.1309 -4.9975 24 6 2.3847 -9.4015 -5.0410 25 6 1.6372 -9.4039 -3.8650 26 7 2.1852 -9.1628 -2.6989 27 6 3.4915 -8.9022 -2.5854 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8902 31 1 2.8720 -3.6043 0.8905 32 1 2.8720 -3.6044 -0.8895 33 1 0.8539 -5.0446 -0.8903 34 1 0.8535 -5.0450 0.8897 35 1 1.0597 -7.5815 -0.0714 36 1 5.8517 -8.1976 -0.2813 37 1 7.2669 -8.1680 -2.2900 38 1 6.3140 -8.5961 -4.4926 39 1 4.3175 -9.1257 -5.8991 40 1 1.9046 -9.6037 -5.9870 41 1 0.5783 -9.6100 -3.9157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327096925.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:05 Heat of formation + Delta-G solvation = -67.016846 kcal Electronic energy + Delta-G solvation = -27784.386471 eV Core-core repulsion = 23756.001642 eV Total energy + Delta-G solvation = -4028.384829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.21449 -39.91075 -37.66835 -37.10589 -35.97130 -34.38851 -34.30296 -34.04946 -32.05392 -31.00560 -30.61767 -28.05729 -24.84815 -24.25891 -24.04983 -23.15204 -21.60435 -20.09095 -19.68637 -18.72326 -18.40037 -17.75482 -17.46134 -16.92354 -16.30357 -16.17150 -15.48988 -15.31601 -15.03785 -14.79838 -14.50278 -14.42783 -14.11707 -13.98511 -13.53244 -13.45563 -12.87178 -12.72613 -12.31175 -12.30179 -12.17429 -12.05468 -11.85810 -11.83159 -11.50721 -11.36459 -11.13198 -10.81476 -10.75953 -10.68875 -10.60498 -10.12057 -9.87889 -9.71617 -9.35323 -9.20512 -9.09121 -8.99404 -8.33727 -5.99491 -4.01173 -0.32851 0.23031 0.42043 1.34516 2.27040 2.41597 2.69670 3.35303 3.38986 3.42528 3.46403 3.68610 3.81832 4.09941 4.20943 4.40541 4.42068 4.45557 4.48268 4.62728 4.73453 4.91342 4.97183 5.07081 5.15058 5.36626 5.46469 5.46804 5.54340 5.57697 5.59354 5.69302 5.85448 6.00990 6.12069 6.36909 6.64323 6.69523 6.84857 7.08574 7.41365 7.66632 7.68355 7.79636 8.00519 8.43805 9.05482 9.62871 11.11929 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.002769 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.220682 B =10111.098222 C =10613.098873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.100 4.100 11 C -0.139 4.139 12 C 0.534 3.466 13 O -0.492 6.492 14 N -1.048 6.048 15 S 2.692 3.308 16 O -0.940 6.940 17 O -0.934 6.934 18 C -0.656 4.656 19 C 0.043 3.957 20 C -0.145 4.145 21 C -0.035 4.035 22 C -0.126 4.126 23 C -0.041 4.041 24 C -0.185 4.185 25 C 0.159 3.841 26 N -0.489 5.489 27 C 0.203 3.797 28 H 0.261 0.739 29 H 0.016 0.984 30 H 0.018 0.982 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.436 0.564 36 H 0.154 0.846 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.211 -23.506 -10.796 26.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.181 4.181 12 C 0.323 3.677 13 O -0.363 6.363 14 N -0.814 5.814 15 S 2.782 3.218 16 O -0.930 6.930 17 O -0.924 6.924 18 C -0.744 4.744 19 C 0.022 3.978 20 C -0.164 4.164 21 C -0.054 4.054 22 C -0.129 4.129 23 C -0.067 4.067 24 C -0.204 4.204 25 C -0.013 4.013 26 N -0.198 5.198 27 C 0.080 3.920 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.272 0.728 36 H 0.172 0.828 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.574 -23.762 -9.258 26.336 hybrid contribution 0.618 1.073 -1.666 2.076 sum 7.192 -22.689 -10.924 26.189 Atomic orbital electron populations 1.69945 1.06032 1.26706 1.50982 1.25012 0.94854 0.99241 0.95330 0.86649 0.79575 0.83060 0.78679 1.20278 1.21323 1.20181 1.21218 0.93153 0.90976 1.50465 0.92602 1.19123 0.93913 0.91301 0.97291 1.21537 0.98861 0.91385 1.02004 1.22011 0.98005 0.93244 1.04813 1.21357 0.90888 0.83497 0.71979 1.90818 1.16668 1.83887 1.44963 1.55001 1.24453 1.20835 1.81133 1.02197 0.73358 0.72768 0.73469 1.93629 1.66101 1.83821 1.49485 1.93628 1.69469 1.42629 1.86680 1.30293 1.08592 1.18941 1.16531 1.20986 0.91404 0.84754 1.00663 1.21121 1.01130 1.01858 0.92273 1.21347 0.93268 0.92293 0.98449 1.18860 0.95278 1.04465 0.94283 1.21538 0.95437 0.93245 0.96514 1.21942 0.95019 1.02962 1.00511 1.23088 1.00705 0.90516 0.86955 1.68035 1.10305 1.13325 1.28133 1.17977 0.89315 0.93299 0.91394 0.92972 0.96537 0.96386 0.92223 0.92561 0.88352 0.88090 0.72757 0.82837 0.84086 0.84293 0.83960 0.83949 0.81535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 10 C -0.10 -2.07 4.44 -26.74 -0.12 -2.18 16 11 C -0.14 -2.18 5.70 -27.88 -0.16 -2.34 16 12 C 0.53 8.38 7.65 -10.99 -0.08 8.29 16 13 O -0.49 -9.18 14.85 -10.19 -0.15 -9.33 16 14 N -1.05 -13.48 5.70 31.22 0.18 -13.31 16 15 S 2.69 38.87 4.99 -107.50 -0.54 38.34 16 16 O -0.94 -15.91 15.97 -64.21 -1.03 -16.94 16 17 O -0.93 -14.44 17.30 -57.17 -0.99 -15.43 16 18 C -0.66 -8.96 5.41 -39.47 -0.21 -9.17 16 19 C 0.04 0.52 9.47 -39.95 -0.38 0.14 16 20 C -0.14 -1.35 9.96 -39.92 -0.40 -1.74 16 21 C -0.03 -0.30 9.78 -39.51 -0.39 -0.68 16 22 C -0.13 -1.31 5.74 -106.80 -0.61 -1.92 16 23 C -0.04 -0.31 9.90 -39.22 -0.39 -0.70 16 24 C -0.18 -1.26 10.03 -39.77 -0.40 -1.66 16 25 C 0.16 1.38 11.15 -17.46 -0.19 1.18 16 26 N -0.49 -5.98 9.15 -10.97 -0.10 -6.08 16 27 C 0.20 2.63 6.56 -84.85 -0.56 2.07 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 32 H 0.06 1.20 8.10 -51.93 -0.42 0.77 16 33 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.44 4.05 8.83 -34.47 -0.30 3.75 16 36 H 0.15 1.75 7.26 -52.49 -0.38 1.37 16 37 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 39 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 40 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -38.37 368.63 -10.67 -49.04 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -4.87 Total: -0.70 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -4.44 Total: -21.91 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.81 Total: -45.40 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -2.17 Total: -41.69 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 38.87 SS G_CDS: -0.54 Total: 38.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.37 -10.67 -49.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327096925.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.976 kcal (2) G-P(sol) polarization free energy of solvation -38.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds