Wall clock time and date at job start Wed Apr 1 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00146 * 2 1 4 4 H 1.48493 * 109.47203 * 240.00112 * 3 2 1 5 5 H 1.48502 * 109.46685 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46988 * 119.99437 * 3 2 1 7 7 C 1.37878 * 120.00317 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00318 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99901 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47487 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47496 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47360 * 180.02562 * 11 10 9 13 13 O 1.21286 * 119.99840 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00166 * 179.97438 * 12 11 10 15 15 S 1.65599 * 119.99969 * 184.89651 * 14 12 11 16 16 O 1.42097 * 106.40293 * 48.12435 * 15 14 12 17 17 O 1.42104 * 106.40131 * 181.04076 * 15 14 12 18 18 C 1.76193 * 107.21979 * 294.58361 * 15 14 12 19 19 C 1.36105 * 120.12888 * 114.90595 * 18 15 14 20 20 C 1.39316 * 121.06746 * 179.97438 * 19 18 15 21 21 C 1.36184 * 120.87013 * 359.97438 * 20 19 18 22 22 C 1.40387 * 119.61263 * 0.02562 * 21 20 19 23 23 C 1.40771 * 121.38881 * 179.97438 * 22 21 20 24 24 C 1.36584 * 118.15346 * 179.09125 * 23 22 21 25 25 C 1.39340 * 119.93384 * 0.87993 * 24 23 22 26 26 N 1.31087 * 121.75110 * 359.39862 * 25 24 23 27 27 C 1.33686 * 121.32101 * 0.02562 * 26 25 24 28 28 H 0.96997 * 119.99955 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47132 * 59.99707 * 9 7 2 30 30 H 1.08995 * 109.47051 * 300.00241 * 9 7 2 31 31 H 1.08998 * 109.47092 * 59.99783 * 10 9 7 32 32 H 1.09004 * 109.47383 * 300.00081 * 10 9 7 33 33 H 1.08998 * 109.47403 * 59.99636 * 11 10 9 34 34 H 1.09005 * 109.46544 * 299.99672 * 11 10 9 35 35 H 0.96999 * 120.00070 * 4.89486 * 14 12 11 36 36 H 1.08001 * 119.46863 * 0.02562 * 19 18 15 37 37 H 1.07998 * 119.56881 * 180.02562 * 20 19 18 38 38 H 1.07998 * 120.19296 * 179.97438 * 21 20 19 39 39 H 1.08008 * 120.92243 * 0.02562 * 23 22 21 40 40 H 1.07994 * 120.03553 * 180.27688 * 24 23 22 41 41 H 1.08000 * 119.12327 * 179.40919 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 -0.0001 12 6 2.4597 -6.1326 0.0005 13 8 3.6521 -5.9109 0.0009 14 7 2.0105 -7.4032 0.0006 15 16 3.0816 -8.6601 0.1237 16 8 3.9491 -8.3437 1.2038 17 8 2.3096 -9.8519 0.0705 18 6 4.0737 -8.6444 -1.3323 19 6 5.4079 -8.3893 -1.2471 20 6 6.2108 -8.3727 -2.3856 21 6 5.6816 -8.6121 -3.6173 22 6 4.3090 -8.8789 -3.7428 23 6 3.7228 -9.1309 -4.9975 24 6 2.3847 -9.4015 -5.0410 25 6 1.6372 -9.4039 -3.8650 26 7 2.1852 -9.1628 -2.6989 27 6 3.4915 -8.9022 -2.5854 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8902 31 1 2.8720 -3.6043 0.8905 32 1 2.8720 -3.6044 -0.8895 33 1 0.8539 -5.0446 -0.8903 34 1 0.8535 -5.0450 0.8897 35 1 1.0597 -7.5815 -0.0714 36 1 5.8517 -8.1976 -0.2813 37 1 7.2669 -8.1680 -2.2900 38 1 6.3140 -8.5961 -4.4926 39 1 4.3175 -9.1257 -5.8991 40 1 1.9046 -9.6037 -5.9870 41 1 0.5783 -9.6100 -3.9157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327096925.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:04 Heat of formation + Delta-G solvation = -94.584453 kcal Electronic energy + Delta-G solvation = -27785.581892 eV Core-core repulsion = 23756.001642 eV Total energy + Delta-G solvation = -4029.580250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.88929 -41.21105 -38.58478 -38.07272 -37.17453 -36.18927 -35.59616 -34.72691 -34.01845 -31.67688 -31.31749 -29.87146 -26.11799 -25.51309 -24.76395 -23.90814 -23.16992 -21.64243 -20.84792 -19.42428 -19.33401 -18.99677 -18.47385 -18.21718 -17.82473 -17.21912 -16.67102 -16.52194 -16.30780 -15.79347 -15.63052 -15.49717 -15.17503 -15.09910 -14.62737 -14.30617 -14.08688 -13.97810 -13.64046 -13.59393 -13.38333 -13.26674 -13.18549 -13.02776 -12.63961 -12.54102 -12.49301 -12.44134 -12.37890 -11.91498 -11.82893 -11.61401 -11.53576 -11.31919 -11.04307 -10.56345 -10.52292 -9.90357 -9.70849 -8.18773 -6.28387 -1.08453 -0.80558 -0.27116 0.65717 1.02011 1.40855 1.43369 1.51217 1.54770 1.78958 2.42497 2.44302 2.90696 3.11935 3.14589 3.20644 3.34850 3.63592 3.70456 3.81064 3.91999 3.97383 4.04882 4.16355 4.23268 4.28611 4.36026 4.51818 4.73872 4.76464 4.82557 4.94436 4.98830 5.03996 5.07814 5.20444 5.22061 5.41973 5.55091 5.65035 5.73312 5.76649 5.88392 6.28741 6.43510 6.75237 6.87069 7.40111 8.92474 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012671 B = 0.002769 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.220682 B =10111.098222 C =10613.098873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.025 3.975 10 C -0.088 4.088 11 C -0.132 4.132 12 C 0.542 3.458 13 O -0.525 6.525 14 N -1.034 6.034 15 S 2.701 3.299 16 O -0.974 6.974 17 O -0.951 6.951 18 C -0.681 4.681 19 C 0.026 3.974 20 C -0.159 4.159 21 C -0.019 4.019 22 C -0.148 4.148 23 C -0.038 4.038 24 C -0.180 4.180 25 C 0.150 3.850 26 N -0.528 5.528 27 C 0.175 3.825 28 H 0.264 0.736 29 H 0.004 0.996 30 H 0.003 0.997 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.450 0.550 36 H 0.146 0.854 37 H 0.170 0.830 38 H 0.183 0.817 39 H 0.182 0.818 40 H 0.181 0.819 41 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.732 -23.806 -13.652 28.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.126 4.126 11 C -0.174 4.174 12 C 0.331 3.669 13 O -0.399 6.399 14 N -0.801 5.801 15 S 2.795 3.205 16 O -0.965 6.965 17 O -0.941 6.941 18 C -0.772 4.772 19 C 0.005 3.995 20 C -0.178 4.178 21 C -0.037 4.037 22 C -0.151 4.151 23 C -0.064 4.064 24 C -0.199 4.199 25 C -0.020 4.020 26 N -0.238 5.238 27 C 0.052 3.948 28 H 0.073 0.927 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.291 0.709 36 H 0.164 0.836 37 H 0.188 0.812 38 H 0.200 0.800 39 H 0.199 0.801 40 H 0.198 0.802 41 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 7.048 -24.091 -12.086 27.859 hybrid contribution 0.403 1.102 -0.917 1.489 sum 7.451 -22.989 -13.003 27.442 Atomic orbital electron populations 1.70053 1.07467 1.27818 1.51559 1.25878 0.95789 1.02974 0.94751 0.85587 0.78405 0.78550 0.79038 1.19364 1.20505 1.19547 1.21668 0.93400 0.92762 1.50738 0.92925 1.19013 0.94192 0.92158 0.95803 1.21257 0.97887 0.92552 1.00947 1.21894 0.97709 0.90562 1.07188 1.21227 0.90225 0.84093 0.71362 1.90810 1.17986 1.84459 1.46601 1.54693 1.25435 1.19588 1.80368 1.01565 0.73043 0.72360 0.73552 1.93579 1.66838 1.84243 1.51794 1.93592 1.70026 1.43257 1.87216 1.29986 1.08996 1.22035 1.16196 1.21176 0.91464 0.85132 1.01687 1.21456 1.02313 1.02252 0.91765 1.21882 0.93007 0.89343 0.99482 1.19267 0.96110 1.04983 0.94774 1.22037 0.96099 0.91676 0.96548 1.22377 0.94933 1.01366 1.01258 1.23759 1.02267 0.89056 0.86900 1.68010 1.10392 1.15316 1.30098 1.18197 0.90272 0.94433 0.91908 0.92692 0.97774 0.97874 0.93508 0.93440 0.85864 0.85883 0.70943 0.83641 0.81206 0.79965 0.80050 0.80161 0.78936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 2 C 0.00 0.24 5.46 84.66 0.46 0.70 16 3 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.55 -31.58 9.11 25.60 0.23 -31.34 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 9 C 0.03 1.31 4.97 29.85 0.15 1.46 16 10 C -0.09 -3.71 4.44 30.59 0.14 -3.57 16 11 C -0.13 -4.09 5.70 29.85 0.17 -3.92 16 12 C 0.54 17.21 7.65 87.66 0.67 17.88 16 13 O -0.53 -20.23 14.85 12.01 0.18 -20.05 16 14 N -1.03 -27.14 5.70 -173.53 -0.99 -28.13 16 15 S 2.70 82.05 4.99 -56.49 -0.28 81.77 16 16 O -0.97 -35.12 15.97 -121.28 -1.94 -37.05 16 17 O -0.95 -30.72 17.30 -128.00 -2.21 -32.94 16 18 C -0.68 -19.32 5.41 22.34 0.12 -19.20 16 19 C 0.03 0.66 9.47 22.03 0.21 0.87 16 20 C -0.16 -2.78 9.96 22.05 0.22 -2.57 16 21 C -0.02 -0.27 9.78 22.31 0.22 -0.05 16 22 C -0.15 -2.79 5.74 -21.28 -0.12 -2.91 16 23 C -0.04 -0.43 9.90 22.50 0.22 -0.21 16 24 C -0.18 -1.82 10.03 22.15 0.22 -1.60 16 25 C 0.15 2.33 11.15 85.07 0.95 3.27 16 26 N -0.53 -12.70 9.15 -188.62 -1.73 -14.42 16 27 C 0.17 4.49 6.56 40.29 0.26 4.75 16 28 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 29 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.05 2.06 8.10 -2.39 -0.02 2.04 16 32 H 0.05 2.05 8.10 -2.38 -0.02 2.03 16 33 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 34 H 0.12 3.29 8.14 -2.38 -0.02 3.27 16 35 H 0.45 8.38 8.83 -96.75 -0.85 7.52 16 36 H 0.15 3.66 7.26 -2.91 -0.02 3.64 16 37 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 39 H 0.18 0.51 8.06 -2.91 -0.02 0.48 16 40 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 41 H 0.19 1.63 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -86.23 368.63 -0.32 -86.55 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.22 Total: 9.50 kcal Atomic # 6 Polarization: -40.55 SS G_CDS: 4.12 Total: -36.42 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -2.43 Total: -97.97 kcal Atomic # 8 Polarization: -86.07 SS G_CDS: -3.97 Total: -90.04 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: 82.05 SS G_CDS: -0.28 Total: 81.77 kcal Total: -86.23 -0.32 -86.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327096925.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.036 kcal (2) G-P(sol) polarization free energy of solvation -86.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds