Wall clock time and date at job start Wed Apr 1 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48504 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46972 * 299.99664 * 3 2 1 6 6 H 1.48499 * 109.47229 * 59.99689 * 3 2 1 7 7 C 1.37879 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00033 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99921 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46831 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.46933 * 180.02562 * 10 9 7 12 12 O 1.42099 * 110.54421 * 68.37678 * 11 10 9 13 13 O 1.42102 * 110.54356 * 291.62372 * 11 10 9 14 14 N 1.65607 * 104.44951 * 179.97438 * 11 10 9 15 15 C 1.34769 * 119.99743 * 64.99737 * 14 11 10 16 16 O 1.21284 * 120.00363 * 0.02562 * 15 14 11 17 17 C 1.50704 * 119.99739 * 180.02562 * 15 14 11 18 18 C 1.50703 * 109.46967 * 180.02562 * 17 15 14 19 19 C 1.36251 * 120.25807 * 264.97330 * 18 17 15 20 20 C 1.39338 * 121.01632 * 180.02562 * 19 18 17 21 21 C 1.36198 * 121.08808 * 0.02562 * 20 19 18 22 22 C 1.40340 * 119.51489 * 359.97438 * 21 20 19 23 23 C 1.40437 * 122.07993 * 180.02562 * 22 21 20 24 24 N 1.31239 * 119.87959 * 179.97438 * 23 22 21 25 25 C 1.32607 * 122.78084 * 0.02562 * 24 23 22 26 26 C 1.36172 * 121.88436 * 0.02562 * 25 24 23 27 27 C 1.40190 * 120.26225 * 85.00177 * 18 17 15 28 28 H 0.96999 * 120.00441 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46949 * 60.00975 * 9 7 2 30 30 H 1.08992 * 109.47526 * 300.00088 * 9 7 2 31 31 H 1.08994 * 109.47239 * 60.00359 * 10 9 7 32 32 H 1.09004 * 109.47150 * 299.99834 * 10 9 7 33 33 H 0.97002 * 119.99825 * 245.00252 * 14 11 10 34 34 H 1.09001 * 109.47272 * 59.99954 * 17 15 14 35 35 H 1.08999 * 109.47416 * 300.00086 * 17 15 14 36 36 H 1.07995 * 119.49161 * 0.05154 * 19 18 17 37 37 H 1.08005 * 119.45348 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.24583 * 180.02562 * 21 20 19 39 39 H 1.08005 * 120.06071 * 359.96557 * 23 22 21 40 40 H 1.08004 * 119.06045 * 180.02562 * 25 24 23 41 41 H 1.07994 * 120.66957 * 180.27803 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 16 1.3383 -5.2330 0.0034 12 8 0.6647 -5.4205 -1.2337 13 8 0.6638 -5.4190 1.2403 14 7 2.5205 -6.3928 0.0038 15 6 3.3470 -6.5120 1.0616 16 8 3.2247 -5.7704 2.0134 17 6 4.4232 -7.5670 1.0617 18 6 5.2019 -7.4901 2.3496 19 6 6.3598 -6.7746 2.4101 20 6 7.0926 -6.6932 3.5924 21 6 6.6749 -7.3263 4.7237 22 6 5.4867 -8.0728 4.6996 23 6 5.0059 -8.7463 5.8343 24 7 3.8890 -9.4318 5.7633 25 6 3.1732 -9.5250 4.6509 26 6 3.5538 -8.9101 3.4971 27 6 4.7408 -8.1546 3.4947 28 1 -0.4851 0.8400 -0.0004 29 1 0.6241 -2.5575 -0.8881 30 1 0.6247 -2.5563 0.8919 31 1 2.8719 -3.6036 0.8926 32 1 2.8719 -3.6051 -0.8873 33 1 2.6180 -6.9861 -0.7574 34 1 5.0952 -7.4006 0.2198 35 1 3.9660 -8.5525 0.9722 36 1 6.7149 -6.2623 1.5282 37 1 8.0069 -6.1187 3.6121 38 1 7.2533 -7.2537 5.6329 39 1 5.5544 -8.7005 6.7635 40 1 2.2623 -10.1052 4.6602 41 1 2.9535 -8.9954 2.6034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329013321.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:24 Heat of formation + Delta-G solvation = -92.603969 kcal Electronic energy + Delta-G solvation = -27610.452396 eV Core-core repulsion = 23580.958026 eV Total energy + Delta-G solvation = -4029.494370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.05178 -40.98808 -38.41258 -38.24487 -37.24865 -35.98048 -35.62271 -34.86579 -33.19917 -32.31854 -31.51239 -28.85738 -27.66148 -25.16802 -24.55458 -23.90600 -23.41376 -21.71754 -20.73709 -19.37976 -18.98036 -18.84188 -18.39020 -17.94943 -17.77133 -17.29190 -16.69838 -16.56418 -16.38141 -15.84701 -15.71575 -15.33522 -15.23394 -15.03125 -14.73747 -14.51997 -14.39190 -13.84057 -13.78895 -13.54278 -13.39494 -13.27991 -13.14091 -12.99588 -12.95972 -12.85168 -12.58083 -12.35171 -12.23986 -12.03169 -11.93737 -11.76339 -11.50336 -11.10601 -11.00962 -10.68327 -10.47371 -9.99194 -8.97457 -8.29141 -6.43421 -1.03263 -0.58665 -0.03034 0.90204 1.02240 1.39117 1.40559 1.44999 1.53727 2.12045 2.35482 2.55424 2.97930 3.04475 3.11664 3.35325 3.43497 3.53003 3.74268 3.82564 3.90744 3.94907 4.02431 4.04242 4.11727 4.24810 4.35019 4.44716 4.52697 4.66729 4.75256 4.84567 4.85159 5.09775 5.14188 5.19892 5.21229 5.47443 5.50294 5.64472 5.67165 5.71049 5.94834 6.01505 6.44843 6.69557 7.00218 7.26776 8.83552 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012715 B = 0.002899 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.567228 B = 9656.204492 C =10669.657255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.004 4.004 3 Si 0.976 3.024 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.022 3.978 10 C -0.578 4.578 11 S 2.597 3.403 12 O -0.971 6.971 13 O -0.981 6.981 14 N -1.034 6.034 15 C 0.530 3.470 16 O -0.526 6.526 17 C -0.096 4.096 18 C -0.089 4.089 19 C -0.083 4.083 20 C -0.124 4.124 21 C -0.086 4.086 22 C -0.134 4.134 23 C 0.142 3.858 24 N -0.519 5.519 25 C 0.059 3.941 26 C -0.168 4.168 27 C -0.030 4.030 28 H 0.268 0.732 29 H 0.015 0.985 30 H 0.002 0.998 31 H 0.133 0.867 32 H 0.154 0.846 33 H 0.453 0.547 34 H 0.165 0.835 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.191 0.809 40 H 0.165 0.835 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.963 -20.776 2.606 28.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.202 4.202 3 Si 0.799 3.201 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.093 0.907 9 C -0.017 4.017 10 C -0.711 4.711 11 S 2.696 3.304 12 O -0.962 6.962 13 O -0.971 6.971 14 N -0.803 5.803 15 C 0.318 3.682 16 O -0.399 6.399 17 C -0.137 4.137 18 C -0.090 4.090 19 C -0.103 4.103 20 C -0.142 4.142 21 C -0.106 4.106 22 C -0.136 4.136 23 C -0.029 4.029 24 N -0.227 5.227 25 C -0.083 4.083 26 C -0.187 4.187 27 C -0.035 4.035 28 H 0.077 0.923 29 H 0.034 0.966 30 H 0.020 0.980 31 H 0.151 0.849 32 H 0.172 0.828 33 H 0.294 0.706 34 H 0.182 0.818 35 H 0.160 0.840 36 H 0.172 0.828 37 H 0.173 0.827 38 H 0.179 0.821 39 H 0.207 0.793 40 H 0.182 0.818 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 17.341 -20.871 3.958 27.422 hybrid contribution 0.295 1.435 -0.963 1.753 sum 17.636 -19.436 2.995 26.415 Atomic orbital electron populations 1.70103 1.08071 1.28368 1.50740 1.26137 0.95908 1.03944 0.94253 0.85235 0.79157 0.77807 0.77879 1.17871 1.19951 1.20545 1.21507 0.93965 0.90661 1.51721 0.90659 1.18830 0.93497 0.92896 0.96500 1.30225 1.12808 1.15578 1.12450 1.05414 0.74919 0.77014 0.73063 1.93563 1.71572 1.85516 1.45510 1.93552 1.72005 1.84962 1.46604 1.54834 1.47995 1.49331 1.28114 1.21437 0.81738 0.85213 0.79803 1.90949 1.70202 1.44757 1.33977 1.20976 0.95499 0.98889 0.98327 1.19242 0.96487 0.99508 0.93764 1.21326 0.93637 0.95396 0.99897 1.21307 1.01176 0.99357 0.92360 1.21367 0.94051 0.94856 1.00301 1.19321 0.98042 1.01566 0.94708 1.23717 0.91351 0.89902 0.97974 1.67434 1.07532 1.18769 1.28978 1.22464 0.99387 0.98228 0.88205 1.22103 0.96919 0.98734 1.00949 1.18286 0.94666 0.96415 0.94129 0.92302 0.96644 0.98007 0.84895 0.82793 0.70612 0.81769 0.84021 0.82828 0.82660 0.82113 0.79252 0.81771 0.83516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.98 43.59 29.54 68.60 2.03 45.62 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.54 -30.38 9.11 25.60 0.23 -30.15 16 8 H 0.08 3.93 7.74 -2.91 -0.02 3.90 16 9 C 0.02 1.16 4.98 29.85 0.15 1.31 16 10 C -0.58 -22.57 5.82 71.98 0.42 -22.15 16 11 S 2.60 91.94 5.11 -56.49 -0.29 91.65 16 12 O -0.97 -37.23 18.08 -127.65 -2.31 -39.54 16 13 O -0.98 -43.88 17.04 -120.72 -2.06 -45.94 16 14 N -1.03 -21.80 5.60 -173.54 -0.97 -22.77 16 15 C 0.53 11.95 7.56 87.66 0.66 12.61 16 16 O -0.53 -17.74 14.14 13.33 0.19 -17.55 16 17 C -0.10 -1.15 5.28 29.10 0.15 -0.99 16 18 C -0.09 -1.58 4.38 -19.85 -0.09 -1.67 16 19 C -0.08 -1.23 9.58 22.07 0.21 -1.02 16 20 C -0.12 -1.68 9.94 22.06 0.22 -1.46 16 21 C -0.09 -1.27 9.81 22.31 0.22 -1.06 16 22 C -0.13 -2.73 5.74 -21.31 -0.12 -2.85 16 23 C 0.14 2.83 11.05 85.32 0.94 3.77 16 24 N -0.52 -12.57 10.30 -195.52 -2.01 -14.58 16 25 C 0.06 1.35 11.07 84.09 0.93 2.28 16 26 C -0.17 -3.64 9.35 22.39 0.21 -3.43 16 27 C -0.03 -0.65 5.75 -21.28 -0.12 -0.77 16 28 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.13 5.15 7.19 -2.39 -0.02 5.13 16 32 H 0.15 4.86 8.14 -2.39 -0.02 4.84 16 33 H 0.45 4.79 8.79 -96.74 -0.85 3.93 16 34 H 0.16 0.46 8.05 -2.39 -0.02 0.44 16 35 H 0.14 0.93 6.79 -2.39 -0.02 0.91 16 36 H 0.15 1.39 8.05 -2.91 -0.02 1.37 16 37 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 38 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 39 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.17 3.01 8.06 -2.91 -0.02 2.99 16 41 H 0.15 2.55 6.65 -2.91 -0.02 2.53 16 Total: -1.00 -91.34 367.52 -0.43 -91.77 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.23 Total: 13.65 kcal Atomic # 6 Polarization: -49.82 SS G_CDS: 4.48 Total: -45.34 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -2.70 Total: -94.32 kcal Atomic # 8 Polarization: -98.85 SS G_CDS: -4.18 Total: -103.03 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 91.94 SS G_CDS: -0.29 Total: 91.65 kcal Total: -91.34 -0.43 -91.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329013321.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.834 kcal (2) G-P(sol) polarization free energy of solvation -91.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds