Wall clock time and date at job start Wed Apr 1 2020 05:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 119.99756 * 2 1 4 4 H 1.48502 * 109.47011 * 90.00286 * 3 2 1 5 5 H 1.48502 * 109.47012 * 210.00044 * 3 2 1 6 6 H 1.48495 * 109.47305 * 330.00105 * 3 2 1 7 7 C 1.37874 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99961 * 185.14551 * 7 2 1 9 9 C 1.50699 * 119.99684 * 5.14854 * 7 2 1 10 10 C 1.53000 * 115.55169 * 279.43992 * 9 7 2 11 11 N 1.46499 * 109.47568 * 294.82822 * 10 9 7 12 12 C 1.34773 * 120.00072 * 184.77088 * 11 10 9 13 13 O 1.21340 * 120.00366 * 5.01051 * 12 11 10 14 14 C 1.49457 * 119.99770 * 185.00703 * 12 11 10 15 15 O 1.21345 * 119.99928 * 5.09270 * 14 12 11 16 16 N 1.34779 * 119.99809 * 185.08971 * 14 12 11 17 17 C 1.46494 * 119.99757 * 180.02562 * 16 14 12 18 18 C 1.53000 * 109.47017 * 180.02562 * 17 16 14 19 19 C 1.53003 * 109.47033 * 180.02562 * 18 17 16 20 20 H 1.09004 * 115.55014 * 330.66721 * 19 18 17 21 21 C 1.53001 * 117.49848 * 116.37864 * 19 18 17 22 22 C 1.53001 * 59.99994 * 107.49091 * 21 19 18 23 23 Cl 1.80305 * 117.49650 * 252.51161 * 22 21 19 24 24 Cl 1.80299 * 117.50141 * 107.49191 * 22 21 19 25 25 C 1.53007 * 117.49977 * 133.73733 * 9 7 2 26 26 C 1.53002 * 59.99998 * 252.50725 * 25 9 7 27 27 H 0.97000 * 119.99622 * 354.99830 * 1 2 3 28 28 H 1.09007 * 109.47006 * 54.82639 * 10 9 7 29 29 H 1.08994 * 109.47411 * 174.82068 * 10 9 7 30 30 H 0.97002 * 119.99529 * 4.76964 * 11 10 9 31 31 H 0.96995 * 120.00115 * 0.02562 * 16 14 12 32 32 H 1.09003 * 109.47369 * 300.00045 * 17 16 14 33 33 H 1.09003 * 109.47614 * 59.99995 * 17 16 14 34 34 H 1.08999 * 109.47231 * 299.99713 * 18 17 16 35 35 H 1.09000 * 109.47315 * 59.99968 * 18 17 16 36 36 H 1.08998 * 117.49314 * 214.97589 * 21 19 18 37 37 H 1.08992 * 117.49715 * 359.97438 * 21 19 18 38 38 H 1.09002 * 117.49349 * 359.97438 * 25 9 7 39 39 H 1.09000 * 117.49979 * 145.01698 * 25 9 7 40 40 H 1.08996 * 117.49484 * 252.50633 * 26 25 9 41 41 H 1.09002 * 117.49449 * 107.48670 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0813 -1.1959 0.0833 9 6 1.2556 -2.4964 -0.1182 10 6 0.6262 -3.0150 1.1763 11 7 1.6833 -3.3479 2.1343 12 6 1.3683 -3.9163 3.3150 13 8 0.2210 -4.2356 3.5477 14 6 2.4320 -4.1533 4.3377 15 8 3.5604 -3.7513 4.1438 16 7 2.1380 -4.8136 5.4752 17 6 3.1806 -5.0455 6.4779 18 6 2.5876 -5.8109 7.6625 19 6 3.6763 -6.0526 8.7100 20 1 4.6915 -6.1368 8.3221 21 6 3.4954 -5.3977 10.0810 22 6 3.3108 -6.9085 9.9244 23 17 1.6300 -7.5552 10.0115 24 17 4.5924 -7.9788 10.6048 25 6 1.7917 -3.5327 -1.1082 26 6 0.5066 -2.7651 -1.4251 27 1 -0.4849 0.8369 0.0732 28 1 -0.0191 -2.2455 1.6002 29 1 0.0363 -3.9061 0.9619 30 1 2.6101 -3.1592 1.9187 31 1 1.2361 -5.1352 5.6300 32 1 3.9870 -5.6300 6.0351 33 1 3.5725 -4.0886 6.8227 34 1 1.7810 -5.2268 8.1055 35 1 2.1960 -6.7679 7.3175 36 1 4.3917 -5.0510 10.5952 37 1 2.6011 -4.7945 10.2364 38 1 2.6858 -3.2721 -1.6745 39 1 1.6960 -4.5841 -0.8372 40 1 -0.4344 -3.3116 -1.3626 41 1 0.5556 -1.9998 -2.1997 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334685499.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:40 Heat of formation + Delta-G solvation = -42.069079 kcal Electronic energy + Delta-G solvation = -24835.386354 eV Core-core repulsion = 20803.606785 eV Total energy + Delta-G solvation = -4031.779568 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.079 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.29854 -38.93000 -38.17208 -36.74155 -36.52277 -36.34433 -35.09983 -33.34149 -32.02766 -30.70685 -27.12401 -25.57084 -24.66667 -22.90756 -22.33037 -21.42054 -21.20487 -19.86852 -19.51420 -18.12338 -16.90912 -16.71098 -16.18957 -15.93001 -15.78950 -15.08169 -14.90753 -14.68328 -14.59444 -13.95229 -13.76425 -13.50206 -13.23292 -13.15920 -12.71543 -12.55115 -12.53803 -12.04964 -11.87627 -11.77479 -11.66571 -11.65107 -11.37018 -11.32322 -11.01059 -10.97689 -10.76902 -10.54073 -10.31318 -10.28077 -9.71858 -9.30294 -9.26352 -9.03075 -8.57092 -8.41908 -8.19808 -6.11759 -4.20333 0.67919 1.66171 1.76414 2.53520 2.69886 3.25638 3.33101 3.36075 3.54977 3.58525 3.72945 3.98787 4.33986 4.41502 4.46975 4.70447 4.87299 4.91162 4.98407 5.08487 5.17368 5.29932 5.34175 5.55008 5.65575 5.93745 6.16297 6.25802 6.38670 6.46080 6.64306 6.74621 6.97950 7.02467 7.18338 7.33916 7.39838 7.79326 7.82233 8.13387 8.29016 8.52095 8.81584 9.47297 10.96157 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.019881 B = 0.001793 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.037307 B =15608.955387 C =16094.524263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.286 1.286 7 C -0.501 4.501 8 H 0.062 0.938 9 C 0.026 3.974 10 C 0.159 3.841 11 N -0.665 5.665 12 C 0.495 3.505 13 O -0.541 6.541 14 C 0.509 3.491 15 O -0.517 6.517 16 N -0.709 5.709 17 C 0.122 3.878 18 C -0.109 4.109 19 C -0.109 4.109 20 H 0.135 0.865 21 C -0.140 4.140 22 C -0.003 4.003 23 Cl -0.089 7.089 24 Cl -0.095 7.095 25 C -0.208 4.208 26 C -0.150 4.150 27 H 0.262 0.738 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.413 0.587 31 H 0.413 0.587 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.997 -13.438 20.171 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.197 1.197 6 H -0.212 1.212 7 C -0.538 4.538 8 H 0.080 0.920 9 C 0.025 3.975 10 C 0.036 3.964 11 N -0.314 5.314 12 C 0.274 3.726 13 O -0.420 6.420 14 C 0.290 3.710 15 O -0.392 6.392 16 N -0.364 5.364 17 C -0.001 4.001 18 C -0.147 4.147 19 C -0.129 4.129 20 H 0.153 0.847 21 C -0.178 4.178 22 C -0.054 4.054 23 Cl -0.062 7.062 24 Cl -0.068 7.068 25 C -0.245 4.245 26 C -0.188 4.188 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.249 0.751 31 H 0.249 0.751 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.798 -13.344 20.155 24.858 hybrid contribution 0.353 0.687 0.178 0.793 sum 6.151 -12.656 20.334 24.728 Atomic orbital electron populations 1.69965 1.05892 1.27032 1.48306 1.24993 0.94838 0.99042 0.94190 0.86600 0.79952 0.83334 0.78236 1.20591 1.19730 1.21171 1.20384 0.92810 0.88459 1.52186 0.91959 1.19031 0.98487 0.93861 0.86140 1.21193 0.88134 0.97972 0.89058 1.45887 1.13298 1.57025 1.15203 1.19887 0.88292 0.80642 0.83777 1.90711 1.20615 1.51911 1.78803 1.20510 0.88843 0.78543 0.83070 1.90760 1.21872 1.48783 1.77781 1.45685 1.14611 1.57565 1.18532 1.21335 0.90624 1.00712 0.87470 1.21513 0.96852 1.02198 0.94141 1.23155 1.02261 0.97781 0.89677 0.84728 1.24112 1.05863 0.89550 0.98241 1.26833 0.81691 0.90102 1.06783 1.98763 1.20577 1.88419 1.98460 1.98761 1.51862 1.69584 1.86575 1.23001 0.98272 0.95640 1.07628 1.22541 0.92958 1.01499 1.01818 0.92805 0.90098 0.93599 0.75055 0.75114 0.90705 0.90627 0.89745 0.89328 0.85940 0.85864 0.90173 0.91503 0.91538 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.87 13.09 55.43 0.73 -23.14 16 2 C 0.07 1.93 5.42 -17.82 -0.10 1.83 16 3 Si 0.89 20.54 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.50 -12.81 8.57 -34.44 -0.30 -13.11 16 8 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 9 C 0.03 0.59 1.32 -155.65 -0.21 0.39 16 10 C 0.16 3.51 5.53 -4.04 -0.02 3.48 16 11 N -0.66 -13.15 5.46 -60.73 -0.33 -13.49 16 12 C 0.49 9.08 7.88 -11.58 -0.09 8.99 16 13 O -0.54 -10.75 16.47 5.51 0.09 -10.66 16 14 C 0.51 7.96 7.89 -11.58 -0.09 7.87 16 15 O -0.52 -9.15 16.50 5.50 0.09 -9.06 16 16 N -0.71 -8.07 5.55 -60.73 -0.34 -8.40 16 17 C 0.12 1.02 5.63 -4.05 -0.02 0.99 16 18 C -0.11 -0.64 4.70 -26.73 -0.13 -0.76 16 19 C -0.11 -0.55 5.58 -90.62 -0.51 -1.06 16 20 H 0.13 0.59 8.08 -51.93 -0.42 0.17 16 21 C -0.14 -0.61 9.86 -26.73 -0.26 -0.87 16 22 C 0.00 -0.02 3.62 -26.73 -0.10 -0.11 16 23 Cl -0.09 -0.66 28.23 -51.86 -1.46 -2.12 16 24 Cl -0.09 -0.67 29.29 -51.86 -1.52 -2.19 16 25 C -0.21 -4.25 9.96 -26.73 -0.27 -4.52 16 26 C -0.15 -3.32 9.66 -26.73 -0.26 -3.58 16 27 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 28 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 29 H 0.05 0.98 8.05 -51.93 -0.42 0.56 16 30 H 0.41 8.08 7.84 -40.82 -0.32 7.76 16 31 H 0.41 4.23 7.95 -40.82 -0.32 3.91 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.46 7.87 -51.93 -0.41 0.05 16 35 H 0.09 0.53 8.02 -51.93 -0.42 0.12 16 36 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.12 0.46 8.03 -51.93 -0.42 0.04 16 38 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 41 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 LS Contribution 388.17 15.07 5.85 5.85 Total: -1.00 -29.46 388.17 -9.91 -39.36 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.65 Total: 8.79 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -2.34 Total: -0.45 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.06 Total: -45.03 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.18 Total: -19.72 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -2.98 Total: -4.31 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.46 -9.91 -39.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334685499.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.705 kcal (2) G-P(sol) polarization free energy of solvation -29.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds