Wall clock time and date at job start Wed Apr 1 2020 05:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 119.99756 * 2 1 4 4 H 1.48502 * 109.47011 * 90.00286 * 3 2 1 5 5 H 1.48502 * 109.47012 * 210.00044 * 3 2 1 6 6 H 1.48495 * 109.47305 * 330.00105 * 3 2 1 7 7 C 1.37874 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99961 * 185.14551 * 7 2 1 9 9 C 1.50699 * 119.99684 * 5.14854 * 7 2 1 10 10 C 1.53000 * 115.55169 * 279.43992 * 9 7 2 11 11 N 1.46499 * 109.47568 * 294.82822 * 10 9 7 12 12 C 1.34773 * 120.00072 * 184.77088 * 11 10 9 13 13 O 1.21340 * 120.00366 * 5.01051 * 12 11 10 14 14 C 1.49457 * 119.99770 * 185.00703 * 12 11 10 15 15 O 1.21345 * 119.99928 * 5.09270 * 14 12 11 16 16 N 1.34779 * 119.99809 * 185.08971 * 14 12 11 17 17 C 1.46494 * 119.99757 * 180.02562 * 16 14 12 18 18 C 1.53000 * 109.47017 * 180.02562 * 17 16 14 19 19 C 1.53003 * 109.47033 * 180.02562 * 18 17 16 20 20 H 1.09004 * 115.55014 * 330.66721 * 19 18 17 21 21 C 1.53001 * 117.49848 * 116.37864 * 19 18 17 22 22 C 1.53001 * 59.99994 * 107.49091 * 21 19 18 23 23 Cl 1.80305 * 117.49650 * 252.51161 * 22 21 19 24 24 Cl 1.80299 * 117.50141 * 107.49191 * 22 21 19 25 25 C 1.53007 * 117.49977 * 133.73733 * 9 7 2 26 26 C 1.53002 * 59.99998 * 252.50725 * 25 9 7 27 27 H 0.97000 * 119.99622 * 354.99830 * 1 2 3 28 28 H 1.09007 * 109.47006 * 54.82639 * 10 9 7 29 29 H 1.08994 * 109.47411 * 174.82068 * 10 9 7 30 30 H 0.97002 * 119.99529 * 4.76964 * 11 10 9 31 31 H 0.96995 * 120.00115 * 0.02562 * 16 14 12 32 32 H 1.09003 * 109.47369 * 300.00045 * 17 16 14 33 33 H 1.09003 * 109.47614 * 59.99995 * 17 16 14 34 34 H 1.08999 * 109.47231 * 299.99713 * 18 17 16 35 35 H 1.09000 * 109.47315 * 59.99968 * 18 17 16 36 36 H 1.08998 * 117.49314 * 214.97589 * 21 19 18 37 37 H 1.08992 * 117.49715 * 359.97438 * 21 19 18 38 38 H 1.09002 * 117.49349 * 359.97438 * 25 9 7 39 39 H 1.09000 * 117.49979 * 145.01698 * 25 9 7 40 40 H 1.08996 * 117.49484 * 252.50633 * 26 25 9 41 41 H 1.09002 * 117.49449 * 107.48670 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0813 -1.1959 0.0833 9 6 1.2556 -2.4964 -0.1182 10 6 0.6262 -3.0150 1.1763 11 7 1.6833 -3.3479 2.1343 12 6 1.3683 -3.9163 3.3150 13 8 0.2210 -4.2356 3.5477 14 6 2.4320 -4.1533 4.3377 15 8 3.5604 -3.7513 4.1438 16 7 2.1380 -4.8136 5.4752 17 6 3.1806 -5.0455 6.4779 18 6 2.5876 -5.8109 7.6625 19 6 3.6763 -6.0526 8.7100 20 1 4.6915 -6.1368 8.3221 21 6 3.4954 -5.3977 10.0810 22 6 3.3108 -6.9085 9.9244 23 17 1.6300 -7.5552 10.0115 24 17 4.5924 -7.9788 10.6048 25 6 1.7917 -3.5327 -1.1082 26 6 0.5066 -2.7651 -1.4251 27 1 -0.4849 0.8369 0.0732 28 1 -0.0191 -2.2455 1.6002 29 1 0.0363 -3.9061 0.9619 30 1 2.6101 -3.1592 1.9187 31 1 1.2361 -5.1352 5.6300 32 1 3.9870 -5.6300 6.0351 33 1 3.5725 -4.0886 6.8227 34 1 1.7810 -5.2268 8.1055 35 1 2.1960 -6.7679 7.3175 36 1 4.3917 -5.0510 10.5952 37 1 2.6011 -4.7945 10.2364 38 1 2.6858 -3.2721 -1.6745 39 1 1.6960 -4.5841 -0.8372 40 1 -0.4344 -3.3116 -1.3626 41 1 0.5556 -1.9998 -2.1997 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334685499.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:39 Heat of formation + Delta-G solvation = -59.987774 kcal Electronic energy + Delta-G solvation = -24836.163367 eV Core-core repulsion = 20803.606785 eV Total energy + Delta-G solvation = -4032.556581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.079 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.61793 -39.79845 -39.20870 -38.45111 -37.04880 -36.95477 -36.00084 -34.87872 -33.99418 -31.47318 -28.71161 -27.43644 -25.76269 -23.62913 -23.13251 -22.90259 -21.98108 -21.38007 -20.96521 -19.52450 -18.09493 -17.82742 -17.40773 -17.09338 -16.72066 -16.61786 -16.16972 -16.02033 -15.80536 -15.36596 -14.98865 -14.67098 -14.41361 -14.10264 -13.74457 -13.60240 -13.50475 -13.17173 -13.00370 -12.93903 -12.84427 -12.76335 -12.56339 -12.35268 -12.34006 -12.16649 -12.03690 -11.89091 -11.50384 -11.22482 -10.87999 -10.81980 -10.66026 -10.48352 -10.29247 -10.11001 -9.94160 -8.10897 -6.23434 0.21452 0.40893 1.17100 1.41953 1.42489 1.45170 1.53248 2.20175 2.21568 2.42604 2.72948 3.11244 3.17509 3.35034 3.44137 3.61343 3.92719 3.97775 4.14993 4.20829 4.41872 4.52793 4.57839 4.64035 4.69549 4.70556 4.84514 4.95842 4.97793 5.01104 5.10994 5.21798 5.26720 5.38374 5.55187 5.63643 5.78011 6.01802 6.36152 6.48782 6.79826 6.84335 7.03574 7.46163 8.96427 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.019881 B = 0.001793 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.037307 B =15608.955387 C =16094.524263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.028 3.972 3 Si 0.947 3.053 4 H -0.280 1.280 5 H -0.267 1.267 6 H -0.287 1.287 7 C -0.506 4.506 8 H 0.059 0.941 9 C 0.000 4.000 10 C 0.175 3.825 11 N -0.669 5.669 12 C 0.494 3.506 13 O -0.558 6.558 14 C 0.515 3.485 15 O -0.540 6.540 16 N -0.689 5.689 17 C 0.121 3.879 18 C -0.100 4.100 19 C -0.105 4.105 20 H 0.144 0.856 21 C -0.127 4.127 22 C -0.013 4.013 23 Cl -0.104 7.104 24 Cl -0.107 7.107 25 C -0.179 4.179 26 C -0.156 4.156 27 H 0.260 0.740 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.414 0.586 31 H 0.420 0.580 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.136 0.864 37 H 0.132 0.868 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.113 -13.998 21.211 26.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.173 4.173 3 Si 0.773 3.227 4 H -0.206 1.206 5 H -0.192 1.192 6 H -0.213 1.213 7 C -0.544 4.544 8 H 0.077 0.923 9 C -0.001 4.001 10 C 0.051 3.949 11 N -0.319 5.319 12 C 0.274 3.726 13 O -0.438 6.438 14 C 0.295 3.705 15 O -0.417 6.417 16 N -0.343 5.343 17 C -0.002 4.002 18 C -0.138 4.138 19 C -0.125 4.125 20 H 0.162 0.838 21 C -0.165 4.165 22 C -0.064 4.064 23 Cl -0.077 7.077 24 Cl -0.080 7.080 25 C -0.216 4.216 26 C -0.195 4.195 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.251 0.749 31 H 0.257 0.743 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.919 -13.934 21.231 26.321 hybrid contribution -0.001 0.804 -0.096 0.810 sum 6.918 -13.130 21.134 25.825 Atomic orbital electron populations 1.70070 1.07002 1.27401 1.49693 1.25648 0.95508 1.01848 0.94330 0.85729 0.78947 0.80027 0.78008 1.20588 1.19158 1.21270 1.20647 0.92822 0.89700 1.51221 0.92314 1.19080 0.99743 0.94305 0.86974 1.20788 0.88217 0.96955 0.88911 1.45800 1.12740 1.57670 1.15665 1.20405 0.88836 0.79560 0.83758 1.90696 1.21620 1.52370 1.79079 1.19932 0.87594 0.79378 0.83571 1.90757 1.22222 1.50359 1.78383 1.45689 1.15745 1.55347 1.17470 1.21553 0.89943 1.01341 0.87347 1.21427 0.97160 1.01903 0.93314 1.23159 1.02335 0.97394 0.89596 0.83819 1.24269 1.06816 0.88092 0.97278 1.27022 0.80731 0.90701 1.07972 1.98762 1.21696 1.88723 1.98527 1.98760 1.52292 1.70164 1.86773 1.22995 0.97281 0.96169 1.05130 1.22490 0.94431 1.01761 1.00793 0.93089 0.93699 0.92988 0.74911 0.74293 0.90301 0.90315 0.89044 0.89283 0.84587 0.84985 0.89741 0.89133 0.90511 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.07 13.09 21.45 0.28 -49.79 16 2 C 0.03 1.46 5.42 84.65 0.46 1.92 16 3 Si 0.95 42.29 29.54 68.60 2.03 44.32 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.51 -25.91 8.57 25.60 0.22 -25.69 16 8 H 0.06 2.98 7.82 -2.91 -0.02 2.95 16 9 C 0.00 -0.01 1.32 -52.92 -0.07 -0.08 16 10 C 0.17 7.75 5.53 86.38 0.48 8.22 16 11 N -0.67 -26.32 5.46 -464.42 -2.54 -28.86 16 12 C 0.49 17.83 7.88 87.27 0.69 18.52 16 13 O -0.56 -21.86 16.47 -3.22 -0.05 -21.92 16 14 C 0.52 15.47 7.89 87.27 0.69 16.16 16 15 O -0.54 -18.46 16.50 -3.23 -0.05 -18.52 16 16 N -0.69 -14.39 5.55 -464.41 -2.58 -16.97 16 17 C 0.12 1.73 5.63 86.38 0.49 2.21 16 18 C -0.10 -0.93 4.70 30.60 0.14 -0.78 16 19 C -0.11 -0.81 5.58 -10.79 -0.06 -0.87 16 20 H 0.14 0.88 8.08 -2.39 -0.02 0.86 16 21 C -0.13 -0.78 9.86 30.59 0.30 -0.48 16 22 C -0.01 -0.13 3.62 30.59 0.11 -0.02 16 23 Cl -0.10 -1.39 28.23 -2.72 -0.08 -1.47 16 24 Cl -0.11 -1.38 29.29 -2.72 -0.08 -1.46 16 25 C -0.18 -7.01 9.96 30.60 0.30 -6.70 16 26 C -0.16 -6.88 9.66 30.60 0.30 -6.58 16 27 H 0.26 13.90 8.32 -92.71 -0.77 13.12 16 28 H 0.04 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.05 2.20 8.05 -2.39 -0.02 2.18 16 30 H 0.41 16.07 7.84 -92.71 -0.73 15.35 16 31 H 0.42 7.79 7.95 -92.71 -0.74 7.06 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 0.76 7.87 -2.39 -0.02 0.74 16 35 H 0.09 0.87 8.02 -2.39 -0.02 0.85 16 36 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.13 0.61 8.03 -2.39 -0.02 0.59 16 38 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -62.78 388.17 0.59 -62.19 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: -0.39 Total: 26.64 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 4.04 Total: 5.82 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -4.83 Total: -95.61 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.11 Total: -40.43 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 17 Polarization: -2.78 SS G_CDS: -0.16 Total: -2.93 kcal Total: -62.78 0.59 -62.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334685499.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.202 kcal (2) G-P(sol) polarization free energy of solvation -62.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds