Wall clock time and date at job start Wed Apr 1 2020 05:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86794 * 119.99752 * 2 1 4 4 H 1.48501 * 109.47105 * 240.00142 * 3 2 1 5 5 H 1.48495 * 109.47359 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47119 * 120.00581 * 3 2 1 7 7 C 1.38627 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99912 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00251 * 359.97438 * 7 2 1 10 10 C 1.35782 * 117.00243 * 174.96996 * 9 7 2 11 11 C 1.38899 * 119.99717 * 5.33755 * 10 9 7 12 12 C 1.38015 * 119.99936 * 180.02562 * 11 10 9 13 13 C 1.38902 * 119.99782 * 359.97438 * 12 11 10 14 14 N 1.40032 * 120.00125 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99723 * 35.13357 * 14 13 12 16 16 O 1.21592 * 119.99921 * 355.48958 * 15 14 13 17 17 N 1.34770 * 120.00030 * 175.48992 * 15 14 13 18 18 C 1.46507 * 119.99904 * 179.97438 * 17 15 14 19 19 C 1.50698 * 109.47151 * 180.02562 * 18 17 15 20 20 N 1.32114 * 120.00974 * 90.00204 * 19 18 17 21 21 C 1.32148 * 120.01764 * 179.97438 * 20 19 18 22 22 C 1.38341 * 120.03529 * 359.97438 * 21 20 19 23 23 N 1.32149 * 120.01712 * 0.02562 * 22 21 20 24 24 C 1.32245 * 119.98597 * 0.02562 * 23 22 21 25 25 Cl 1.73592 * 120.02102 * 180.02562 * 24 23 22 26 26 C 1.38911 * 120.00113 * 0.25549 * 13 12 11 27 27 C 1.38002 * 119.99570 * 359.49311 * 26 13 12 28 28 H 0.97002 * 120.00123 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.00207 * 0.02562 * 11 10 9 30 30 H 1.08003 * 119.99724 * 179.97438 * 12 11 10 31 31 H 0.96996 * 120.00564 * 215.13036 * 14 13 12 32 32 H 0.96998 * 120.00269 * 0.02562 * 17 15 14 33 33 H 1.09000 * 109.46697 * 60.00406 * 18 17 15 34 34 H 1.08997 * 109.47089 * 300.00452 * 18 17 15 35 35 H 1.08001 * 119.97966 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.99326 * 179.74788 * 22 21 20 37 37 H 1.08002 * 120.00306 * 179.74070 * 26 13 12 38 38 H 1.08011 * 119.99946 * 180.25214 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6964 1.2124 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0703 -3.5045 -0.1071 11 6 3.4576 -3.4373 -0.0981 12 6 4.2052 -4.5923 -0.2070 13 6 3.5701 -5.8220 -0.3251 14 7 4.3285 -6.9939 -0.4361 15 6 5.4952 -7.1071 0.2291 16 8 5.9297 -6.1625 0.8595 17 7 6.1803 -8.2672 0.1956 18 6 7.4487 -8.3900 0.9183 19 6 8.0077 -9.7754 0.7202 20 7 8.8165 -10.0227 -0.2947 21 6 9.3071 -11.2374 -0.4683 22 6 8.9748 -12.2509 0.4127 23 7 8.1659 -12.0050 1.4284 24 6 7.6737 -10.7900 1.6023 25 17 6.6116 -10.4659 2.9366 26 6 2.1827 -5.8888 -0.3389 27 6 1.4353 -4.7343 -0.2248 28 1 -0.4850 0.8401 0.0004 29 1 3.9513 -2.4812 -0.0059 30 1 5.2839 -4.5400 -0.2004 31 1 4.0143 -7.7242 -0.9917 32 1 5.8339 -9.0207 -0.3075 33 1 7.2800 -8.2144 1.9808 34 1 8.1571 -7.6548 0.5366 35 1 9.9685 -11.4388 -1.2980 36 1 9.3729 -13.2443 0.2679 37 1 1.6889 -6.8445 -0.4349 38 1 0.3564 -4.7865 -0.2315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365028697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:59 Heat of formation + Delta-G solvation = 30.625857 kcal Electronic energy + Delta-G solvation = -25945.882756 eV Core-core repulsion = 21816.147983 eV Total energy + Delta-G solvation = -4129.734773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.89404 -40.29045 -38.74602 -37.40512 -36.78859 -35.67892 -34.49586 -33.93777 -32.25642 -31.94590 -30.14156 -28.43939 -27.04019 -25.28904 -25.18006 -23.56379 -22.30950 -21.59437 -20.53906 -18.70353 -18.67456 -18.06169 -17.86755 -17.48637 -16.65589 -16.27040 -15.93786 -15.48420 -15.00293 -14.78131 -14.46940 -14.31242 -14.09639 -13.57434 -13.52010 -13.30465 -13.17056 -12.82270 -12.80661 -12.50744 -12.38527 -11.83519 -11.72692 -11.66126 -11.51689 -11.46562 -10.97082 -10.73125 -10.41900 -10.10157 -9.87951 -9.77208 -9.66054 -9.28687 -9.14598 -8.64422 -8.14769 -6.87670 -6.39734 -3.97282 -0.17843 0.26865 1.08101 2.18693 2.28816 2.52624 2.95875 3.17572 3.18292 3.21642 3.28793 3.31985 3.53317 3.55041 4.02045 4.22131 4.27102 4.34649 4.50171 4.63184 5.12680 5.14473 5.29813 5.31075 5.45868 5.72192 5.79052 6.11653 6.17154 6.23118 6.34953 6.37649 6.66271 6.78569 6.89727 7.00076 7.14396 7.21020 7.38127 7.49715 7.83890 8.00514 8.05798 8.64322 9.06115 9.76038 10.78207 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.024655 B = 0.001844 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.401970 B =15177.438073 C =15457.375497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.178 6.178 10 C 0.145 3.855 11 C -0.220 4.220 12 C -0.063 4.063 13 C 0.052 3.948 14 N -0.672 5.672 15 C 0.705 3.295 16 O -0.570 6.570 17 N -0.742 5.742 18 C 0.191 3.809 19 C 0.082 3.918 20 N -0.404 5.404 21 C 0.054 3.946 22 C 0.076 3.924 23 N -0.432 5.432 24 C 0.136 3.864 25 Cl 0.005 6.995 26 C -0.094 4.094 27 C -0.178 4.178 28 H 0.270 0.730 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.398 0.602 32 H 0.394 0.606 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.183 0.817 36 H 0.183 0.817 37 H 0.114 0.886 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.397 -25.873 -1.241 31.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.091 3.909 11 C -0.240 4.240 12 C -0.083 4.083 13 C -0.041 4.041 14 N -0.319 5.319 15 C 0.405 3.595 16 O -0.446 6.446 17 N -0.399 5.399 18 C 0.066 3.934 19 C -0.060 4.060 20 N -0.120 5.120 21 C -0.107 4.107 22 C -0.085 4.085 23 N -0.148 5.148 24 C -0.031 4.031 25 Cl 0.033 6.967 26 C -0.115 4.115 27 C -0.198 4.198 28 H 0.079 0.921 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.231 0.769 32 H 0.227 0.773 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.200 0.800 36 H 0.200 0.800 37 H 0.132 0.868 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.275 -24.726 -0.469 30.167 hybrid contribution 0.230 -0.223 -0.384 0.500 sum 17.505 -24.950 -0.853 30.490 Atomic orbital electron populations 1.70039 1.05917 1.27686 1.46290 1.25272 0.95845 0.98799 0.96638 0.85787 0.78679 0.79792 0.79228 1.19510 1.20349 1.19489 1.21280 0.91820 0.80848 1.52649 0.89083 1.83972 1.34238 1.11389 1.78525 1.19410 0.90295 0.88128 0.93034 1.21109 0.93531 0.98780 1.10540 1.20885 0.99963 0.90220 0.97280 1.17021 0.89427 0.84514 1.13106 1.42239 1.21433 1.18485 1.49778 1.15807 0.80783 0.82729 0.80170 1.90954 1.69094 1.37520 1.47051 1.44846 1.23790 1.14445 1.56814 1.19906 0.85211 0.89595 0.98704 1.22042 0.95775 0.96769 0.91413 1.68482 1.05447 1.21593 1.16429 1.24024 0.98147 0.88632 0.99900 1.23932 0.93203 1.01808 0.89519 1.67930 1.07617 1.19710 1.19582 1.22816 0.95825 0.91402 0.93067 1.98476 1.61206 1.93884 1.43110 1.20317 0.91356 0.97437 1.02370 1.19965 0.99422 0.89833 1.10575 0.92051 0.85233 0.85500 0.76856 0.77262 0.88735 0.88678 0.80008 0.80012 0.86831 0.86099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.57 13.67 55.48 0.76 -24.81 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.91 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.39 -11.06 9.48 30.88 0.29 -10.77 16 8 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 9 O -0.18 -5.13 9.75 0.00 0.00 -5.13 16 10 C 0.15 3.56 6.65 -39.09 -0.26 3.30 16 11 C -0.22 -5.02 9.16 -39.42 -0.36 -5.39 16 12 C -0.06 -1.30 8.69 -39.42 -0.34 -1.64 16 13 C 0.05 0.93 6.30 -83.62 -0.53 0.40 16 14 N -0.67 -9.19 5.35 -14.18 -0.08 -9.27 16 15 C 0.70 10.09 8.41 -86.92 -0.73 9.36 16 16 O -0.57 -10.58 13.78 5.28 0.07 -10.51 16 17 N -0.74 -7.50 5.55 -66.41 -0.37 -7.87 16 18 C 0.19 1.84 5.58 -5.19 -0.03 1.82 16 19 C 0.08 0.68 6.16 -82.37 -0.51 0.17 16 20 N -0.40 -3.09 10.42 -9.26 -0.10 -3.19 16 21 C 0.05 0.24 11.22 -17.38 -0.20 0.05 16 22 C 0.08 0.34 11.22 -17.38 -0.20 0.14 16 23 N -0.43 -3.36 10.49 -10.17 -0.11 -3.47 16 24 C 0.14 1.15 7.28 -17.27 -0.13 1.02 16 25 Cl 0.00 0.04 27.48 -51.86 -1.42 -1.38 16 26 C -0.09 -1.65 9.96 -39.42 -0.39 -2.04 16 27 C -0.18 -3.73 9.98 -39.42 -0.39 -4.13 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.13 2.98 5.63 -52.49 -0.30 2.69 16 30 H 0.13 2.59 6.22 -52.48 -0.33 2.26 16 31 H 0.40 3.90 8.84 -40.82 -0.36 3.54 16 32 H 0.39 3.01 8.48 -40.82 -0.35 2.67 16 33 H 0.09 0.96 6.91 -51.93 -0.36 0.60 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.18 0.16 8.06 -52.49 -0.42 -0.26 16 36 H 0.18 0.12 8.06 -52.49 -0.42 -0.30 16 37 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.12 2.41 8.06 -52.48 -0.42 1.98 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -35.59 352.92 -8.02 -43.61 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -3.21 Total: 7.52 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -3.86 Total: -6.72 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.11 Total: -48.60 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: 0.07 Total: -15.64 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.42 Total: -1.38 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.59 -8.02 -43.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365028697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.234 kcal (2) G-P(sol) polarization free energy of solvation -35.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds