Wall clock time and date at job start Wed Apr 1 2020 05:11:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31576 * 1
3 3 Si 1.86794 * 119.99752 * 2 1
4 4 H 1.48501 * 109.47105 * 240.00142 * 3 2 1
5 5 H 1.48495 * 109.47359 * 0.02562 * 3 2 1
6 6 H 1.48501 * 109.47119 * 120.00581 * 3 2 1
7 7 C 1.38627 * 119.99887 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99912 * 179.97438 * 7 2 1
9 9 O 1.34811 * 120.00251 * 359.97438 * 7 2 1
10 10 C 1.35782 * 117.00243 * 174.96996 * 9 7 2
11 11 C 1.38899 * 119.99717 * 5.33755 * 10 9 7
12 12 C 1.38015 * 119.99936 * 180.02562 * 11 10 9
13 13 C 1.38902 * 119.99782 * 359.97438 * 12 11 10
14 14 N 1.40032 * 120.00125 * 179.97438 * 13 12 11
15 15 C 1.34780 * 119.99723 * 35.13357 * 14 13 12
16 16 O 1.21592 * 119.99921 * 355.48958 * 15 14 13
17 17 N 1.34770 * 120.00030 * 175.48992 * 15 14 13
18 18 C 1.46507 * 119.99904 * 179.97438 * 17 15 14
19 19 C 1.50698 * 109.47151 * 180.02562 * 18 17 15
20 20 N 1.32114 * 120.00974 * 90.00204 * 19 18 17
21 21 C 1.32148 * 120.01764 * 179.97438 * 20 19 18
22 22 C 1.38341 * 120.03529 * 359.97438 * 21 20 19
23 23 N 1.32149 * 120.01712 * 0.02562 * 22 21 20
24 24 C 1.32245 * 119.98597 * 0.02562 * 23 22 21
25 25 Cl 1.73592 * 120.02102 * 180.02562 * 24 23 22
26 26 C 1.38911 * 120.00113 * 0.25549 * 13 12 11
27 27 C 1.38002 * 119.99570 * 359.49311 * 26 13 12
28 28 H 0.97002 * 120.00123 * 359.97438 * 1 2 3
29 29 H 1.07994 * 120.00207 * 0.02562 * 11 10 9
30 30 H 1.08003 * 119.99724 * 179.97438 * 12 11 10
31 31 H 0.96996 * 120.00564 * 215.13036 * 14 13 12
32 32 H 0.96998 * 120.00269 * 0.02562 * 17 15 14
33 33 H 1.09000 * 109.46697 * 60.00406 * 18 17 15
34 34 H 1.08997 * 109.47089 * 300.00452 * 18 17 15
35 35 H 1.08001 * 119.97966 * 180.02562 * 21 20 19
36 36 H 1.08001 * 119.99326 * 179.74788 * 22 21 20
37 37 H 1.08002 * 120.00306 * 179.74070 * 26 13 12
38 38 H 1.08011 * 119.99946 * 180.25214 * 27 26 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3158 0.0000 0.0000
3 14 2.2497 1.6177 0.0000
4 1 3.1034 1.6964 -1.2125
5 1 1.2847 2.7464 0.0006
6 1 3.1035 1.6964 1.2124
7 6 2.0089 -1.2006 -0.0005
8 1 3.0889 -1.2006 -0.0010
9 8 1.3348 -2.3681 -0.0005
10 6 2.0703 -3.5045 -0.1071
11 6 3.4576 -3.4373 -0.0981
12 6 4.2052 -4.5923 -0.2070
13 6 3.5701 -5.8220 -0.3251
14 7 4.3285 -6.9939 -0.4361
15 6 5.4952 -7.1071 0.2291
16 8 5.9297 -6.1625 0.8595
17 7 6.1803 -8.2672 0.1956
18 6 7.4487 -8.3900 0.9183
19 6 8.0077 -9.7754 0.7202
20 7 8.8165 -10.0227 -0.2947
21 6 9.3071 -11.2374 -0.4683
22 6 8.9748 -12.2509 0.4127
23 7 8.1659 -12.0050 1.4284
24 6 7.6737 -10.7900 1.6023
25 17 6.6116 -10.4659 2.9366
26 6 2.1827 -5.8888 -0.3389
27 6 1.4353 -4.7343 -0.2248
28 1 -0.4850 0.8401 0.0004
29 1 3.9513 -2.4812 -0.0059
30 1 5.2839 -4.5400 -0.2004
31 1 4.0143 -7.7242 -0.9917
32 1 5.8339 -9.0207 -0.3075
33 1 7.2800 -8.2144 1.9808
34 1 8.1571 -7.6548 0.5366
35 1 9.9685 -11.4388 -1.2980
36 1 9.3729 -13.2443 0.2679
37 1 1.6889 -6.8445 -0.4349
38 1 0.3564 -4.7865 -0.2315
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001365028697.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:11:59
Heat of formation + Delta-G solvation = 30.625857 kcal
Electronic energy + Delta-G solvation = -25945.882756 eV
Core-core repulsion = 21816.147983 eV
Total energy + Delta-G solvation = -4129.734773 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 348.078 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.89404 -40.29045 -38.74602 -37.40512 -36.78859 -35.67892 -34.49586 -33.93777
-32.25642 -31.94590 -30.14156 -28.43939 -27.04019 -25.28904 -25.18006 -23.56379
-22.30950 -21.59437 -20.53906 -18.70353 -18.67456 -18.06169 -17.86755 -17.48637
-16.65589 -16.27040 -15.93786 -15.48420 -15.00293 -14.78131 -14.46940 -14.31242
-14.09639 -13.57434 -13.52010 -13.30465 -13.17056 -12.82270 -12.80661 -12.50744
-12.38527 -11.83519 -11.72692 -11.66126 -11.51689 -11.46562 -10.97082 -10.73125
-10.41900 -10.10157 -9.87951 -9.77208 -9.66054 -9.28687 -9.14598 -8.64422
-8.14769 -6.87670 -6.39734 -3.97282 -0.17843 0.26865 1.08101 2.18693
2.28816 2.52624 2.95875 3.17572 3.18292 3.21642 3.28793 3.31985
3.53317 3.55041 4.02045 4.22131 4.27102 4.34649 4.50171 4.63184
5.12680 5.14473 5.29813 5.31075 5.45868 5.72192 5.79052 6.11653
6.17154 6.23118 6.34953 6.37649 6.66271 6.78569 6.89727 7.00076
7.14396 7.21020 7.38127 7.49715 7.83890 8.00514 8.05798 8.64322
9.06115 9.76038 10.78207
Molecular weight = 348.08amu
Principal moments of inertia in cm(-1)
A = 0.024655 B = 0.001844 C = 0.001811
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1135.401970 B =15177.438073 C =15457.375497
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.864 5.864
2 C 0.038 3.962
3 Si 0.940 3.060
4 H -0.270 1.270
5 H -0.279 1.279
6 H -0.270 1.270
7 C -0.390 4.390
8 H 0.092 0.908
9 O -0.178 6.178
10 C 0.145 3.855
11 C -0.220 4.220
12 C -0.063 4.063
13 C 0.052 3.948
14 N -0.672 5.672
15 C 0.705 3.295
16 O -0.570 6.570
17 N -0.742 5.742
18 C 0.191 3.809
19 C 0.082 3.918
20 N -0.404 5.404
21 C 0.054 3.946
22 C 0.076 3.924
23 N -0.432 5.432
24 C 0.136 3.864
25 Cl 0.005 6.995
26 C -0.094 4.094
27 C -0.178 4.178
28 H 0.270 0.730
29 H 0.130 0.870
30 H 0.127 0.873
31 H 0.398 0.602
32 H 0.394 0.606
33 H 0.095 0.905
34 H 0.095 0.905
35 H 0.183 0.817
36 H 0.183 0.817
37 H 0.114 0.886
38 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.397 -25.873 -1.241 31.203
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.499 5.499
2 C -0.166 4.166
3 Si 0.765 3.235
4 H -0.195 1.195
5 H -0.203 1.203
6 H -0.195 1.195
7 C -0.466 4.466
8 H 0.109 0.891
9 O -0.081 6.081
10 C 0.091 3.909
11 C -0.240 4.240
12 C -0.083 4.083
13 C -0.041 4.041
14 N -0.319 5.319
15 C 0.405 3.595
16 O -0.446 6.446
17 N -0.399 5.399
18 C 0.066 3.934
19 C -0.060 4.060
20 N -0.120 5.120
21 C -0.107 4.107
22 C -0.085 4.085
23 N -0.148 5.148
24 C -0.031 4.031
25 Cl 0.033 6.967
26 C -0.115 4.115
27 C -0.198 4.198
28 H 0.079 0.921
29 H 0.148 0.852
30 H 0.145 0.855
31 H 0.231 0.769
32 H 0.227 0.773
33 H 0.113 0.887
34 H 0.113 0.887
35 H 0.200 0.800
36 H 0.200 0.800
37 H 0.132 0.868
38 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 17.275 -24.726 -0.469 30.167
hybrid contribution 0.230 -0.223 -0.384 0.500
sum 17.505 -24.950 -0.853 30.490
Atomic orbital electron populations
1.70039 1.05917 1.27686 1.46290 1.25272 0.95845 0.98799 0.96638
0.85787 0.78679 0.79792 0.79228 1.19510 1.20349 1.19489 1.21280
0.91820 0.80848 1.52649 0.89083 1.83972 1.34238 1.11389 1.78525
1.19410 0.90295 0.88128 0.93034 1.21109 0.93531 0.98780 1.10540
1.20885 0.99963 0.90220 0.97280 1.17021 0.89427 0.84514 1.13106
1.42239 1.21433 1.18485 1.49778 1.15807 0.80783 0.82729 0.80170
1.90954 1.69094 1.37520 1.47051 1.44846 1.23790 1.14445 1.56814
1.19906 0.85211 0.89595 0.98704 1.22042 0.95775 0.96769 0.91413
1.68482 1.05447 1.21593 1.16429 1.24024 0.98147 0.88632 0.99900
1.23932 0.93203 1.01808 0.89519 1.67930 1.07617 1.19710 1.19582
1.22816 0.95825 0.91402 0.93067 1.98476 1.61206 1.93884 1.43110
1.20317 0.91356 0.97437 1.02370 1.19965 0.99422 0.89833 1.10575
0.92051 0.85233 0.85500 0.76856 0.77262 0.88735 0.88678 0.80008
0.80012 0.86831 0.86099
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -25.57 13.67 55.48 0.76 -24.81 16
2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16
3 Si 0.94 20.91 29.55 -169.99 -5.02 15.89 16
4 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16
5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16
6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16
7 C -0.39 -11.06 9.48 30.88 0.29 -10.77 16
8 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16
9 O -0.18 -5.13 9.75 0.00 0.00 -5.13 16
10 C 0.15 3.56 6.65 -39.09 -0.26 3.30 16
11 C -0.22 -5.02 9.16 -39.42 -0.36 -5.39 16
12 C -0.06 -1.30 8.69 -39.42 -0.34 -1.64 16
13 C 0.05 0.93 6.30 -83.62 -0.53 0.40 16
14 N -0.67 -9.19 5.35 -14.18 -0.08 -9.27 16
15 C 0.70 10.09 8.41 -86.92 -0.73 9.36 16
16 O -0.57 -10.58 13.78 5.28 0.07 -10.51 16
17 N -0.74 -7.50 5.55 -66.41 -0.37 -7.87 16
18 C 0.19 1.84 5.58 -5.19 -0.03 1.82 16
19 C 0.08 0.68 6.16 -82.37 -0.51 0.17 16
20 N -0.40 -3.09 10.42 -9.26 -0.10 -3.19 16
21 C 0.05 0.24 11.22 -17.38 -0.20 0.05 16
22 C 0.08 0.34 11.22 -17.38 -0.20 0.14 16
23 N -0.43 -3.36 10.49 -10.17 -0.11 -3.47 16
24 C 0.14 1.15 7.28 -17.27 -0.13 1.02 16
25 Cl 0.00 0.04 27.48 -51.86 -1.42 -1.38 16
26 C -0.09 -1.65 9.96 -39.42 -0.39 -2.04 16
27 C -0.18 -3.73 9.98 -39.42 -0.39 -4.13 16
28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16
29 H 0.13 2.98 5.63 -52.49 -0.30 2.69 16
30 H 0.13 2.59 6.22 -52.48 -0.33 2.26 16
31 H 0.40 3.90 8.84 -40.82 -0.36 3.54 16
32 H 0.39 3.01 8.48 -40.82 -0.35 2.67 16
33 H 0.09 0.96 6.91 -51.93 -0.36 0.60 16
34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16
35 H 0.18 0.16 8.06 -52.49 -0.42 -0.26 16
36 H 0.18 0.12 8.06 -52.49 -0.42 -0.30 16
37 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16
38 H 0.12 2.41 8.06 -52.48 -0.42 1.98 16
LS Contribution 352.92 15.07 5.32 5.32
Total: -1.00 -35.59 352.92 -8.02 -43.61
By element:
Atomic # 1 Polarization: 10.73 SS G_CDS: -3.21 Total: 7.52 kcal
Atomic # 6 Polarization: -2.86 SS G_CDS: -3.86 Total: -6.72 kcal
Atomic # 7 Polarization: -48.71 SS G_CDS: 0.11 Total: -48.60 kcal
Atomic # 8 Polarization: -15.71 SS G_CDS: 0.07 Total: -15.64 kcal
Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal
Atomic # 17 Polarization: 0.04 SS G_CDS: -1.42 Total: -1.38 kcal
Total LS contribution 5.32 Total: 5.32 kcal
Total: -35.59 -8.02 -43.61 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001365028697.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.234 kcal
(2) G-P(sol) polarization free energy of solvation -35.590 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.644 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.608 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.626 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds