Wall clock time and date at job start Wed Apr 1 2020 05:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86794 * 119.99752 * 2 1 4 4 H 1.48501 * 109.47105 * 240.00142 * 3 2 1 5 5 H 1.48495 * 109.47359 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47119 * 120.00581 * 3 2 1 7 7 C 1.38627 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99912 * 179.97438 * 7 2 1 9 9 O 1.34811 * 120.00251 * 359.97438 * 7 2 1 10 10 C 1.35782 * 117.00243 * 174.96996 * 9 7 2 11 11 C 1.38899 * 119.99717 * 5.33755 * 10 9 7 12 12 C 1.38015 * 119.99936 * 180.02562 * 11 10 9 13 13 C 1.38902 * 119.99782 * 359.97438 * 12 11 10 14 14 N 1.40032 * 120.00125 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99723 * 35.13357 * 14 13 12 16 16 O 1.21592 * 119.99921 * 355.48958 * 15 14 13 17 17 N 1.34770 * 120.00030 * 175.48992 * 15 14 13 18 18 C 1.46507 * 119.99904 * 179.97438 * 17 15 14 19 19 C 1.50698 * 109.47151 * 180.02562 * 18 17 15 20 20 N 1.32114 * 120.00974 * 90.00204 * 19 18 17 21 21 C 1.32148 * 120.01764 * 179.97438 * 20 19 18 22 22 C 1.38341 * 120.03529 * 359.97438 * 21 20 19 23 23 N 1.32149 * 120.01712 * 0.02562 * 22 21 20 24 24 C 1.32245 * 119.98597 * 0.02562 * 23 22 21 25 25 Cl 1.73592 * 120.02102 * 180.02562 * 24 23 22 26 26 C 1.38911 * 120.00113 * 0.25549 * 13 12 11 27 27 C 1.38002 * 119.99570 * 359.49311 * 26 13 12 28 28 H 0.97002 * 120.00123 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.00207 * 0.02562 * 11 10 9 30 30 H 1.08003 * 119.99724 * 179.97438 * 12 11 10 31 31 H 0.96996 * 120.00564 * 215.13036 * 14 13 12 32 32 H 0.96998 * 120.00269 * 0.02562 * 17 15 14 33 33 H 1.09000 * 109.46697 * 60.00406 * 18 17 15 34 34 H 1.08997 * 109.47089 * 300.00452 * 18 17 15 35 35 H 1.08001 * 119.97966 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.99326 * 179.74788 * 22 21 20 37 37 H 1.08002 * 120.00306 * 179.74070 * 26 13 12 38 38 H 1.08011 * 119.99946 * 180.25214 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1034 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1035 1.6964 1.2124 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0703 -3.5045 -0.1071 11 6 3.4576 -3.4373 -0.0981 12 6 4.2052 -4.5923 -0.2070 13 6 3.5701 -5.8220 -0.3251 14 7 4.3285 -6.9939 -0.4361 15 6 5.4952 -7.1071 0.2291 16 8 5.9297 -6.1625 0.8595 17 7 6.1803 -8.2672 0.1956 18 6 7.4487 -8.3900 0.9183 19 6 8.0077 -9.7754 0.7202 20 7 8.8165 -10.0227 -0.2947 21 6 9.3071 -11.2374 -0.4683 22 6 8.9748 -12.2509 0.4127 23 7 8.1659 -12.0050 1.4284 24 6 7.6737 -10.7900 1.6023 25 17 6.6116 -10.4659 2.9366 26 6 2.1827 -5.8888 -0.3389 27 6 1.4353 -4.7343 -0.2248 28 1 -0.4850 0.8401 0.0004 29 1 3.9513 -2.4812 -0.0059 30 1 5.2839 -4.5400 -0.2004 31 1 4.0143 -7.7242 -0.9917 32 1 5.8339 -9.0207 -0.3075 33 1 7.2800 -8.2144 1.9808 34 1 8.1571 -7.6548 0.5366 35 1 9.9685 -11.4388 -1.2980 36 1 9.3729 -13.2443 0.2679 37 1 1.6889 -6.8445 -0.4349 38 1 0.3564 -4.7865 -0.2315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365028697.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:59 Heat of formation + Delta-G solvation = 3.039857 kcal Electronic energy + Delta-G solvation = -25947.078975 eV Core-core repulsion = 21816.147983 eV Total energy + Delta-G solvation = -4130.930992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.40946 -41.57817 -40.43816 -38.37880 -37.98595 -36.57317 -35.42524 -35.15322 -34.14335 -32.72234 -31.81383 -29.73462 -28.10547 -27.14773 -25.76168 -24.35218 -23.81725 -23.05408 -21.87193 -20.10723 -19.57625 -19.19027 -19.04208 -18.43135 -18.18406 -17.00190 -16.74373 -16.69336 -16.26701 -16.05555 -15.81790 -15.51445 -15.38260 -15.21234 -14.88429 -14.61355 -14.35556 -14.05487 -13.75479 -13.54600 -13.38890 -13.22005 -13.17021 -12.89657 -12.68040 -12.44655 -12.41057 -12.26917 -12.13715 -11.50203 -11.32663 -10.93710 -10.55067 -10.37757 -10.32535 -10.22486 -9.80006 -8.56127 -8.44549 -6.11114 -0.65944 -0.20989 0.52095 0.56002 0.62407 1.36015 1.45702 1.51675 1.54608 2.07112 2.19870 2.40729 2.73079 2.85454 3.03842 3.12275 3.17593 3.23820 3.55105 3.78972 3.91087 4.12881 4.16545 4.27414 4.40963 4.51274 4.53940 4.69451 4.76060 5.08367 5.08758 5.15901 5.20733 5.38424 5.43973 5.63799 5.73842 5.88507 5.95246 6.04992 6.21727 6.44171 6.96049 7.00030 7.48562 7.80060 8.77877 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.024655 B = 0.001844 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.401970 B =15177.438073 C =15457.375497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.016 2.984 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.261 1.261 7 C -0.413 4.413 8 H 0.097 0.903 9 O -0.228 6.228 10 C 0.105 3.895 11 C -0.228 4.228 12 C -0.075 4.075 13 C 0.082 3.918 14 N -0.660 5.660 15 C 0.704 3.296 16 O -0.613 6.613 17 N -0.719 5.719 18 C 0.194 3.806 19 C 0.074 3.926 20 N -0.426 5.426 21 C 0.066 3.934 22 C 0.090 3.910 23 N -0.455 5.455 24 C 0.126 3.874 25 Cl -0.012 7.012 26 C -0.078 4.078 27 C -0.179 4.179 28 H 0.273 0.727 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.422 0.578 32 H 0.410 0.590 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.223 0.777 36 H 0.225 0.775 37 H 0.166 0.834 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.673 -29.407 -2.501 35.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.835 3.165 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.489 4.489 8 H 0.114 0.886 9 O -0.135 6.135 10 C 0.054 3.946 11 C -0.248 4.248 12 C -0.095 4.095 13 C -0.013 4.013 14 N -0.309 5.309 15 C 0.405 3.595 16 O -0.493 6.493 17 N -0.376 5.376 18 C 0.068 3.932 19 C -0.066 4.066 20 N -0.141 5.141 21 C -0.096 4.096 22 C -0.071 4.071 23 N -0.172 5.172 24 C -0.040 4.040 25 Cl 0.016 6.984 26 C -0.098 4.098 27 C -0.199 4.199 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.145 0.855 31 H 0.260 0.740 32 H 0.246 0.754 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.239 0.761 36 H 0.241 0.759 37 H 0.184 0.816 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 19.570 -28.368 -1.742 34.507 hybrid contribution -0.210 0.358 -0.075 0.422 sum 19.360 -28.010 -1.817 34.098 Atomic orbital electron populations 1.70175 1.07808 1.28782 1.48870 1.26520 0.96881 1.02543 0.95966 0.84691 0.77437 0.74568 0.79805 1.18254 1.19359 1.18521 1.21719 0.92379 0.81617 1.53181 0.88569 1.83933 1.35574 1.12396 1.81562 1.19937 0.91108 0.88387 0.95144 1.21096 0.93270 0.99310 1.11117 1.20949 0.99908 0.90670 0.97996 1.17118 0.90078 0.85037 1.09033 1.42025 1.20957 1.17801 1.50159 1.15929 0.80724 0.83165 0.79702 1.90943 1.70112 1.39403 1.48802 1.44615 1.23439 1.13498 1.56047 1.19831 0.84527 0.90777 0.98042 1.21616 0.96942 0.95737 0.92350 1.68475 1.05819 1.23434 1.16419 1.24737 0.97165 0.87282 1.00399 1.24695 0.91153 1.03546 0.87745 1.67957 1.08781 1.19355 1.21126 1.22707 0.96432 0.91924 0.92948 1.98464 1.61872 1.94037 1.44014 1.20728 0.90933 0.98301 0.99813 1.20301 1.00295 0.89610 1.09702 0.91845 0.86603 0.85507 0.73958 0.75393 0.89538 0.89613 0.76056 0.75912 0.81644 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.99 13.67 21.61 0.30 -56.69 16 2 C -0.02 -1.25 5.49 84.82 0.47 -0.78 16 3 Si 1.02 44.23 29.55 68.60 2.03 46.26 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.41 -24.75 9.48 67.91 0.64 -24.11 16 8 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 9 O -0.23 -13.95 9.75 -22.91 -0.22 -14.17 16 10 C 0.10 5.35 6.65 22.59 0.15 5.50 16 11 C -0.23 -10.83 9.16 22.38 0.20 -10.62 16 12 C -0.07 -3.06 8.69 22.38 0.19 -2.86 16 13 C 0.08 2.73 6.30 38.15 0.24 2.97 16 14 N -0.66 -15.99 5.35 -317.04 -1.69 -17.68 16 15 C 0.70 18.87 8.41 179.06 1.51 20.37 16 16 O -0.61 -22.43 13.78 -4.01 -0.06 -22.49 16 17 N -0.72 -13.14 5.55 -482.29 -2.68 -15.82 16 18 C 0.19 3.57 5.58 85.63 0.48 4.04 16 19 C 0.07 1.10 6.16 42.58 0.26 1.36 16 20 N -0.43 -5.39 10.42 -183.21 -1.91 -7.30 16 21 C 0.07 0.32 11.22 84.67 0.95 1.27 16 22 C 0.09 0.44 11.22 84.67 0.95 1.39 16 23 N -0.46 -5.95 10.49 -186.10 -1.95 -7.90 16 24 C 0.13 1.93 7.28 84.70 0.62 2.54 16 25 Cl -0.01 -0.21 27.48 -2.72 -0.07 -0.29 16 26 C -0.08 -2.49 9.96 22.38 0.22 -2.27 16 27 C -0.18 -7.45 9.98 22.37 0.22 -7.23 16 28 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 29 H 0.12 5.68 5.63 -2.91 -0.02 5.66 16 30 H 0.13 5.20 6.22 -2.91 -0.02 5.19 16 31 H 0.42 6.38 8.84 -92.71 -0.82 5.56 16 32 H 0.41 5.09 8.48 -92.71 -0.79 4.30 16 33 H 0.09 1.75 6.91 -2.39 -0.02 1.73 16 34 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.22 -0.82 8.06 -2.91 -0.02 -0.84 16 36 H 0.22 -0.92 8.06 -2.91 -0.02 -0.94 16 37 H 0.17 3.66 8.06 -2.91 -0.02 3.63 16 38 H 0.13 5.08 8.06 -2.90 -0.02 5.06 16 Total: -1.00 -84.14 352.92 0.41 -83.73 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -0.43 Total: 20.76 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 7.11 Total: -8.41 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -7.94 Total: -105.38 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.28 Total: -36.66 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -0.07 Total: -0.29 kcal Total: -84.14 0.41 -83.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365028697.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.770 kcal (2) G-P(sol) polarization free energy of solvation -84.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds