Wall clock time and date at job start Wed Apr 1 2020 04:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86797 * 119.99992 * 2 1 4 4 H 1.48503 * 109.47282 * 240.00156 * 3 2 1 5 5 H 1.48505 * 109.46995 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47116 * 120.00197 * 3 2 1 7 7 C 1.40031 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99819 * 179.97438 * 7 2 1 9 9 C 1.41333 * 120.00111 * 0.02562 * 7 2 1 10 10 C 1.40613 * 119.78750 * 179.97438 * 9 7 2 11 11 C 1.38310 * 119.13563 * 180.02562 * 10 9 7 12 12 C 1.38690 * 118.66694 * 359.74761 * 11 10 9 13 13 C 1.39661 * 119.49745 * 0.51723 * 12 11 10 14 14 N 1.39174 * 119.57729 * 179.74290 * 13 12 11 15 15 C 1.34774 * 119.99784 * 185.35056 * 14 13 12 16 16 O 1.21508 * 120.00518 * 354.84382 * 15 14 13 17 17 C 1.48102 * 119.99832 * 174.84323 * 15 14 13 18 18 C 1.39856 * 120.92531 * 359.97438 * 17 15 14 19 19 C 1.38125 * 119.00318 * 180.02562 * 18 17 15 20 20 N 1.31837 * 120.89572 * 0.02651 * 19 18 17 21 21 C 1.31799 * 122.05245 * 359.67803 * 20 19 18 22 22 S 1.76200 * 119.54960 * 180.31582 * 21 20 19 23 23 N 1.65599 * 107.21836 * 270.26848 * 22 21 20 24 24 O 1.42106 * 106.40424 * 23.81084 * 22 21 20 25 25 O 1.42101 * 106.40119 * 156.72658 * 22 21 20 26 26 C 1.38162 * 120.89708 * 0.58740 * 21 20 19 27 27 N 1.31946 * 120.84348 * 359.47460 * 13 12 11 28 28 H 0.96993 * 119.99858 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.43240 * 359.97438 * 10 9 7 30 30 H 1.07997 * 120.66694 * 180.02562 * 11 10 9 31 31 H 1.08000 * 120.25646 * 180.24688 * 12 11 10 32 32 H 0.96996 * 120.00290 * 5.36021 * 14 13 12 33 33 H 1.08000 * 120.50419 * 0.02562 * 18 17 15 34 34 H 1.08000 * 119.55284 * 180.02562 * 19 18 17 35 35 H 0.96996 * 120.00265 * 0.02562 * 23 22 21 36 36 H 0.97006 * 119.99533 * 179.97438 * 23 22 21 37 37 H 1.08000 * 120.50083 * 179.72526 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7464 0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3009 -2.4367 -0.0016 10 6 2.0085 -3.6518 -0.0027 11 6 1.3034 -4.8417 -0.0043 12 6 -0.0827 -4.7937 0.0006 13 6 -0.7279 -3.5550 -0.0041 14 7 -2.1187 -3.5049 -0.0046 15 6 -2.7502 -2.3197 -0.1179 16 8 -2.1088 -1.2877 -0.1252 17 6 -4.2260 -2.2751 -0.2334 18 6 -4.9833 -3.4509 -0.2277 19 6 -6.3573 -3.3631 -0.3384 20 7 -6.9542 -2.1928 -0.4487 21 6 -6.2790 -1.0609 -0.4526 22 16 -7.1449 0.4670 -0.5952 23 7 -7.2706 0.8103 -2.2103 24 8 -8.4664 0.2240 -0.1326 25 8 -6.2973 1.4622 -0.0381 26 6 -4.9011 -1.0564 -0.3519 27 7 -0.0357 -2.4317 -0.0026 28 1 -0.4849 0.8400 0.0004 29 1 3.0885 -3.6560 -0.0031 30 1 1.8217 -5.7891 -0.0048 31 1 -0.6588 -5.7071 0.0035 32 1 -2.6335 -4.3229 0.0767 33 1 -4.5011 -4.4131 -0.1381 34 1 -6.9508 -4.2654 -0.3345 35 1 -6.8952 0.2021 -2.8661 36 1 -7.7202 1.6194 -2.5006 37 1 -4.3539 -0.1253 -0.3602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413468824.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:29 Heat of formation + Delta-G solvation = -2.406037 kcal Electronic energy + Delta-G solvation = -27394.384575 eV Core-core repulsion = 23265.261138 eV Total energy + Delta-G solvation = -4129.123437 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.75551 -39.20762 -37.57572 -37.29551 -36.01062 -34.44015 -33.45363 -33.31869 -32.81054 -31.86334 -30.43454 -29.17748 -25.89324 -25.09593 -24.24671 -22.30215 -21.43638 -20.50376 -19.54711 -18.77333 -17.85386 -17.61384 -17.30219 -16.90297 -16.09926 -15.96001 -15.73369 -15.23850 -14.90744 -14.75912 -14.64881 -14.53149 -14.04334 -13.73625 -13.65096 -12.92150 -12.62626 -12.35845 -12.26164 -12.24719 -12.12067 -12.05472 -11.55451 -11.21444 -11.04600 -10.76940 -10.74337 -10.57636 -10.22684 -10.20365 -10.03457 -9.91753 -9.80445 -9.39285 -9.14660 -8.10297 -7.40810 -7.15216 -6.25873 -4.50894 -0.00530 0.25722 0.59422 2.56464 2.76653 2.93676 3.06486 3.13607 3.14357 3.20629 3.29810 3.44333 3.85498 3.92412 3.99895 4.40123 4.51575 4.55686 4.74728 4.82261 4.91348 5.27265 5.41785 5.63847 5.71840 5.90678 5.98011 6.07359 6.33248 6.47754 6.67101 6.73034 6.74075 7.11813 7.19705 7.38328 7.45901 7.68685 7.84324 8.04328 8.28361 8.56950 8.88639 8.95215 10.08676 10.37470 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012276 B = 0.003421 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.397131 B = 8181.723107 C =10270.112185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.660 5.660 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.421 4.421 8 H 0.084 0.916 9 C 0.270 3.730 10 C -0.301 4.301 11 C -0.036 4.036 12 C -0.355 4.355 13 C 0.369 3.631 14 N -0.656 5.656 15 C 0.509 3.491 16 O -0.384 6.384 17 C -0.084 4.084 18 C -0.091 4.091 19 C 0.079 3.921 20 N -0.383 5.383 21 C -0.454 4.454 22 S 2.716 3.284 23 N -1.247 6.247 24 O -0.943 6.943 25 O -0.949 6.949 26 C -0.029 4.029 27 N -0.475 5.475 28 H 0.275 0.725 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.399 0.601 33 H 0.149 0.851 34 H 0.174 0.826 35 H 0.417 0.583 36 H 0.422 0.578 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.895 -3.413 -4.425 14.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.279 5.279 2 C -0.171 4.171 3 Si 0.723 3.277 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.451 4.451 8 H 0.102 0.898 9 C 0.145 3.855 10 C -0.324 4.324 11 C -0.060 4.060 12 C -0.381 4.381 13 C 0.131 3.869 14 N -0.304 5.304 15 C 0.289 3.711 16 O -0.246 6.246 17 C -0.096 4.096 18 C -0.111 4.111 19 C -0.083 4.083 20 N -0.094 5.094 21 C -0.672 4.672 22 S 2.799 3.201 23 N -0.923 5.923 24 O -0.932 6.932 25 O -0.938 6.938 26 C -0.051 4.051 27 N -0.194 5.194 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.234 0.766 33 H 0.167 0.833 34 H 0.191 0.809 35 H 0.244 0.756 36 H 0.253 0.747 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -15.253 -1.067 -3.607 15.710 hybrid contribution 1.838 -1.469 -0.502 2.406 sum -13.415 -2.537 -4.109 14.258 Atomic orbital electron populations 1.70258 1.05966 1.27889 1.23784 1.26174 0.95154 1.00746 0.95054 0.86533 0.80205 0.81251 0.79731 1.19110 1.20197 1.19091 1.19595 0.94165 0.89354 1.42011 0.89820 1.18356 0.86964 0.92042 0.88092 1.21649 0.98694 0.93464 1.18597 1.20571 0.93115 0.96632 0.95651 1.20447 0.94847 0.94720 1.28087 1.18501 0.82640 0.91199 0.94602 1.43163 1.05559 1.08633 1.73019 1.18269 0.85427 0.85768 0.81605 1.91277 1.63951 1.30601 1.38806 1.21044 0.95966 0.93728 0.98900 1.22782 0.95663 0.99234 0.93466 1.23044 0.92220 0.96145 0.96899 1.67641 1.39099 0.97386 1.05269 1.33175 1.02848 1.16840 1.14360 1.01601 0.73734 0.72244 0.72478 1.52947 1.76022 1.36394 1.26890 1.93608 1.36384 1.84513 1.78730 1.93679 1.68663 1.55187 1.76226 1.22221 0.93091 1.00639 0.89150 1.68648 1.07278 1.23181 1.20269 0.91302 0.88382 0.88432 0.88998 0.76644 0.83327 0.80884 0.75565 0.74728 0.81220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.73 8.99 55.55 0.50 -17.23 16 2 C 0.06 1.48 5.50 -17.34 -0.10 1.39 16 3 Si 0.90 18.84 29.56 -169.99 -5.02 13.82 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.42 -11.22 9.14 -37.73 -0.34 -11.56 16 8 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 9 C 0.27 7.33 6.55 -85.00 -0.56 6.77 16 10 C -0.30 -7.28 9.83 -38.66 -0.38 -7.66 16 11 C -0.04 -0.77 10.15 -39.39 -0.40 -1.17 16 12 C -0.36 -7.50 9.95 -38.88 -0.39 -7.88 16 13 C 0.37 8.49 7.42 -155.04 -1.15 7.34 16 14 N -0.66 -11.89 5.33 -12.19 -0.07 -11.95 16 15 C 0.51 9.64 7.75 -12.21 -0.09 9.55 16 16 O -0.38 -9.14 12.21 5.36 0.07 -9.07 16 17 C -0.08 -1.20 5.91 -104.65 -0.62 -1.82 16 18 C -0.09 -0.93 9.61 -39.02 -0.38 -1.30 16 19 C 0.08 0.76 11.17 -17.59 -0.20 0.56 16 20 N -0.38 -4.62 10.08 -12.51 -0.13 -4.74 16 21 C -0.45 -5.66 6.83 -17.59 -0.12 -5.79 16 22 S 2.72 30.96 6.34 -107.50 -0.68 30.28 16 23 N -1.25 -8.86 9.55 60.35 0.58 -8.29 16 24 O -0.94 -13.38 17.85 -57.17 -1.02 -14.40 16 25 O -0.95 -13.80 17.26 -57.17 -0.99 -14.78 16 26 C -0.03 -0.41 9.12 -39.02 -0.36 -0.77 16 27 N -0.47 -12.79 5.74 -10.27 -0.06 -12.85 16 28 H 0.28 6.96 8.29 -40.82 -0.34 6.62 16 29 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 30 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.40 5.25 6.86 -40.82 -0.28 4.97 16 33 H 0.15 1.03 6.55 -52.49 -0.34 0.69 16 34 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 35 H 0.42 2.18 8.92 -34.47 -0.31 1.88 16 36 H 0.42 2.11 8.96 -34.47 -0.31 1.81 16 37 H 0.17 2.51 7.29 -52.49 -0.38 2.13 16 LS Contribution 340.13 15.07 5.13 5.13 Total: -1.00 -37.70 340.13 -9.63 -47.33 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -2.86 Total: 9.10 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -5.08 Total: -12.33 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.83 Total: -55.07 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -1.94 Total: -38.25 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Atomic # 16 Polarization: 30.96 SS G_CDS: -0.68 Total: 30.28 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -37.70 -9.63 -47.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413468824.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.924 kcal (2) G-P(sol) polarization free energy of solvation -37.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds