Wall clock time and date at job start Wed Apr 1 2020 04:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86797 * 119.99992 * 2 1 4 4 H 1.48503 * 109.47282 * 240.00156 * 3 2 1 5 5 H 1.48505 * 109.46995 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47116 * 120.00197 * 3 2 1 7 7 C 1.40031 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99819 * 179.97438 * 7 2 1 9 9 C 1.41333 * 120.00111 * 0.02562 * 7 2 1 10 10 C 1.40613 * 119.78750 * 179.97438 * 9 7 2 11 11 C 1.38310 * 119.13563 * 180.02562 * 10 9 7 12 12 C 1.38690 * 118.66694 * 359.74761 * 11 10 9 13 13 C 1.39661 * 119.49745 * 0.51723 * 12 11 10 14 14 N 1.39174 * 119.57729 * 179.74290 * 13 12 11 15 15 C 1.34774 * 119.99784 * 185.35056 * 14 13 12 16 16 O 1.21508 * 120.00518 * 354.84382 * 15 14 13 17 17 C 1.48102 * 119.99832 * 174.84323 * 15 14 13 18 18 C 1.39856 * 120.92531 * 359.97438 * 17 15 14 19 19 C 1.38125 * 119.00318 * 180.02562 * 18 17 15 20 20 N 1.31837 * 120.89572 * 0.02651 * 19 18 17 21 21 C 1.31799 * 122.05245 * 359.67803 * 20 19 18 22 22 S 1.76200 * 119.54960 * 180.31582 * 21 20 19 23 23 N 1.65599 * 107.21836 * 270.26848 * 22 21 20 24 24 O 1.42106 * 106.40424 * 23.81084 * 22 21 20 25 25 O 1.42101 * 106.40119 * 156.72658 * 22 21 20 26 26 C 1.38162 * 120.89708 * 0.58740 * 21 20 19 27 27 N 1.31946 * 120.84348 * 359.47460 * 13 12 11 28 28 H 0.96993 * 119.99858 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.43240 * 359.97438 * 10 9 7 30 30 H 1.07997 * 120.66694 * 180.02562 * 11 10 9 31 31 H 1.08000 * 120.25646 * 180.24688 * 12 11 10 32 32 H 0.96996 * 120.00290 * 5.36021 * 14 13 12 33 33 H 1.08000 * 120.50419 * 0.02562 * 18 17 15 34 34 H 1.08000 * 119.55284 * 180.02562 * 19 18 17 35 35 H 0.96996 * 120.00265 * 0.02562 * 23 22 21 36 36 H 0.97006 * 119.99533 * 179.97438 * 23 22 21 37 37 H 1.08000 * 120.50083 * 179.72526 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7464 0.0006 6 1 3.0952 1.6964 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3009 -2.4367 -0.0016 10 6 2.0085 -3.6518 -0.0027 11 6 1.3034 -4.8417 -0.0043 12 6 -0.0827 -4.7937 0.0006 13 6 -0.7279 -3.5550 -0.0041 14 7 -2.1187 -3.5049 -0.0046 15 6 -2.7502 -2.3197 -0.1179 16 8 -2.1088 -1.2877 -0.1252 17 6 -4.2260 -2.2751 -0.2334 18 6 -4.9833 -3.4509 -0.2277 19 6 -6.3573 -3.3631 -0.3384 20 7 -6.9542 -2.1928 -0.4487 21 6 -6.2790 -1.0609 -0.4526 22 16 -7.1449 0.4670 -0.5952 23 7 -7.2706 0.8103 -2.2103 24 8 -8.4664 0.2240 -0.1326 25 8 -6.2973 1.4622 -0.0381 26 6 -4.9011 -1.0564 -0.3519 27 7 -0.0357 -2.4317 -0.0026 28 1 -0.4849 0.8400 0.0004 29 1 3.0885 -3.6560 -0.0031 30 1 1.8217 -5.7891 -0.0048 31 1 -0.6588 -5.7071 0.0035 32 1 -2.6335 -4.3229 0.0767 33 1 -4.5011 -4.4131 -0.1381 34 1 -6.9508 -4.2654 -0.3345 35 1 -6.8952 0.2021 -2.8661 36 1 -7.7202 1.6194 -2.5006 37 1 -4.3539 -0.1253 -0.3602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413468824.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:28 Heat of formation + Delta-G solvation = -33.728151 kcal Electronic energy + Delta-G solvation = -27395.742804 eV Core-core repulsion = 23265.261138 eV Total energy + Delta-G solvation = -4130.481666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.86911 -40.67313 -39.22280 -38.34624 -37.05555 -36.11584 -35.02607 -34.16301 -33.96623 -32.81978 -32.24923 -30.91857 -27.64020 -26.33931 -25.26059 -23.81350 -23.13223 -21.86309 -20.63823 -20.07328 -19.28111 -18.50023 -18.38528 -18.27064 -17.41567 -16.95385 -16.78400 -16.52680 -16.29767 -16.23532 -16.20544 -15.61876 -15.50376 -15.20625 -15.00324 -14.62768 -14.03185 -13.74595 -13.64930 -13.36738 -13.28323 -13.18365 -12.90391 -12.75957 -12.60407 -12.52335 -12.34657 -11.83002 -11.62983 -11.44230 -11.30827 -11.20489 -10.91724 -10.82605 -10.76901 -9.93733 -9.19877 -8.91146 -8.09705 -6.44642 -0.91838 -0.70147 -0.42941 0.90102 1.23002 1.39130 1.50562 1.51552 1.78276 1.94942 2.01720 2.24479 2.39198 2.66641 2.97525 2.98731 3.37925 3.55573 3.62519 3.77869 3.97786 4.02191 4.27538 4.36224 4.49168 4.64709 4.75756 4.85596 4.94507 5.00532 5.18722 5.21523 5.23887 5.64884 5.75814 5.90531 6.09553 6.25449 6.30744 6.31725 6.60315 6.77042 7.03367 7.41854 8.28276 8.52472 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012276 B = 0.003421 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.397131 B = 8181.723107 C =10270.112185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.014 3.986 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.465 4.465 8 H 0.086 0.914 9 C 0.238 3.762 10 C -0.326 4.326 11 C -0.034 4.034 12 C -0.338 4.338 13 C 0.347 3.653 14 N -0.641 5.641 15 C 0.505 3.495 16 O -0.442 6.442 17 C -0.103 4.103 18 C -0.065 4.065 19 C 0.090 3.910 20 N -0.394 5.394 21 C -0.453 4.453 22 S 2.739 3.261 23 N -1.229 6.229 24 O -0.970 6.970 25 O -0.987 6.987 26 C -0.043 4.043 27 N -0.511 5.511 28 H 0.271 0.729 29 H 0.105 0.895 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.423 0.577 33 H 0.190 0.810 34 H 0.224 0.776 35 H 0.429 0.571 36 H 0.434 0.566 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.402 -6.345 -4.972 17.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.314 5.314 2 C -0.211 4.211 3 Si 0.793 3.207 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.496 4.496 8 H 0.105 0.895 9 C 0.112 3.888 10 C -0.349 4.349 11 C -0.058 4.058 12 C -0.364 4.364 13 C 0.108 3.892 14 N -0.291 5.291 15 C 0.288 3.712 16 O -0.308 6.308 17 C -0.115 4.115 18 C -0.086 4.086 19 C -0.072 4.072 20 N -0.105 5.105 21 C -0.670 4.670 22 S 2.823 3.177 23 N -0.911 5.911 24 O -0.959 6.959 25 O -0.976 6.976 26 C -0.066 4.066 27 N -0.231 5.231 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.263 0.737 33 H 0.207 0.793 34 H 0.240 0.760 35 H 0.259 0.741 36 H 0.268 0.732 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.801 -4.046 -4.165 17.776 hybrid contribution 2.189 -0.856 -0.364 2.379 sum -14.612 -4.902 -4.529 16.064 Atomic orbital electron populations 1.70457 1.07338 1.28185 1.25444 1.26983 0.95953 1.03920 0.94245 0.85429 0.78719 0.76633 0.79955 1.18304 1.20028 1.18488 1.19899 0.94533 0.90474 1.44684 0.89547 1.18820 0.87799 0.93400 0.88735 1.21833 0.99318 0.93835 1.19911 1.21069 0.93644 0.97348 0.93787 1.20976 0.95138 0.95629 1.24620 1.19023 0.84563 0.91293 0.94282 1.43045 1.04001 1.09806 1.72297 1.18917 0.87258 0.85094 0.79899 1.91271 1.65810 1.32467 1.41264 1.20627 0.93252 0.95566 1.02087 1.23193 0.95827 0.99114 0.90451 1.23878 0.92255 0.96746 0.94301 1.67714 1.39414 0.97961 1.05411 1.33008 1.01739 1.17463 1.14812 1.00644 0.72584 0.71418 0.73068 1.52530 1.75968 1.37198 1.25365 1.93574 1.37538 1.84819 1.79999 1.93639 1.69388 1.56722 1.77804 1.22095 0.93876 1.00184 0.90424 1.68607 1.07576 1.25607 1.21272 0.91835 0.87725 0.84298 0.84370 0.73716 0.79299 0.75978 0.74138 0.73227 0.83331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -39.67 8.99 21.84 0.20 -39.47 16 2 C 0.01 0.77 5.50 85.29 0.47 1.24 16 3 Si 0.97 40.57 29.56 68.60 2.03 42.60 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 5 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.47 -26.06 9.14 23.47 0.21 -25.85 16 8 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 9 C 0.24 13.38 6.55 40.21 0.26 13.64 16 10 C -0.33 -15.86 9.83 22.87 0.22 -15.64 16 11 C -0.03 -1.40 10.15 22.39 0.23 -1.18 16 12 C -0.34 -13.25 9.95 22.72 0.23 -13.03 16 13 C 0.35 15.74 7.42 133.27 0.99 16.72 16 14 N -0.64 -22.32 5.33 -310.79 -1.66 -23.98 16 15 C 0.51 19.37 7.75 86.86 0.67 20.05 16 16 O -0.44 -22.28 12.21 -3.74 -0.05 -22.32 16 17 C -0.10 -2.86 5.91 -19.88 -0.12 -2.98 16 18 C -0.07 -1.08 9.61 22.63 0.22 -0.87 16 19 C 0.09 1.33 11.17 84.67 0.95 2.27 16 20 N -0.39 -8.46 10.08 -193.48 -1.95 -10.42 16 21 C -0.45 -11.01 6.83 84.68 0.58 -10.43 16 22 S 2.74 62.85 6.34 -56.49 -0.36 62.49 16 23 N -1.23 -16.62 9.55 37.02 0.35 -16.27 16 24 O -0.97 -27.17 17.85 -128.00 -2.29 -29.45 16 25 O -0.99 -30.09 17.26 -128.00 -2.21 -32.30 16 26 C -0.04 -1.25 9.12 22.63 0.21 -1.05 16 27 N -0.51 -28.42 5.74 -186.41 -1.07 -29.49 16 28 H 0.27 14.71 8.29 -92.71 -0.77 13.95 16 29 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 30 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 31 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 32 H 0.42 9.58 6.86 -92.71 -0.64 8.95 16 33 H 0.19 1.50 6.55 -2.91 -0.02 1.48 16 34 H 0.22 1.07 8.06 -2.91 -0.02 1.04 16 35 H 0.43 4.02 8.92 -96.75 -0.86 3.15 16 36 H 0.43 3.96 8.96 -96.74 -0.87 3.09 16 37 H 0.15 4.86 7.29 -2.91 -0.02 4.84 16 Total: -1.00 -88.38 340.13 -3.05 -91.43 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -1.17 Total: 24.25 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 5.12 Total: -17.08 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -4.13 Total: -119.62 kcal Atomic # 8 Polarization: -79.53 SS G_CDS: -4.54 Total: -84.07 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Atomic # 16 Polarization: 62.85 SS G_CDS: -0.36 Total: 62.49 kcal Total: -88.38 -3.05 -91.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413468824.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.704 kcal (2) G-P(sol) polarization free energy of solvation -88.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds