Wall clock time and date at job start Wed Apr 1 2020 05:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 119.99962 * 2 1 4 4 H 1.48492 * 109.47379 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47133 * 120.00041 * 3 2 1 6 6 H 1.48502 * 109.46867 * 239.99942 * 3 2 1 7 7 C 1.39946 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00005 * 152.31708 * 7 2 1 9 9 C 1.41396 * 120.00033 * 332.30860 * 7 2 1 10 10 C 1.40740 * 120.24348 * 335.50172 * 9 7 2 11 11 C 1.37598 * 119.74427 * 180.02562 * 10 9 7 12 12 C 1.38664 * 120.24635 * 0.02562 * 11 10 9 13 13 C 1.38612 * 120.50310 * 0.02562 * 12 11 10 14 14 C 1.37638 * 120.24555 * 359.66805 * 13 12 11 15 15 S 1.76199 * 120.12700 * 180.32184 * 14 13 12 16 16 O 1.42109 * 106.40319 * 357.55656 * 15 14 13 17 17 O 1.42103 * 106.40244 * 130.47335 * 15 14 13 18 18 N 1.65600 * 107.22038 * 244.01472 * 15 14 13 19 19 C 1.46499 * 119.99996 * 63.84605 * 18 15 14 20 20 H 1.09008 * 109.47123 * 334.36712 * 19 18 15 21 21 C 1.53001 * 109.47122 * 94.36160 * 19 18 15 22 22 O 1.42898 * 109.46652 * 65.00141 * 21 19 18 23 23 C 1.50699 * 109.47322 * 214.36656 * 19 18 15 24 24 C 1.38672 * 120.42173 * 139.71978 * 23 19 18 25 25 C 1.38629 * 118.42009 * 179.78278 * 24 23 19 26 26 C 1.38226 * 119.16051 * 0.51213 * 25 24 23 27 27 N 1.31853 * 120.76556 * 359.72673 * 26 25 24 28 28 C 1.31886 * 121.72518 * 359.97438 * 27 26 25 29 29 H 0.97002 * 120.00097 * 176.13526 * 1 2 3 30 30 H 1.07997 * 120.12546 * 359.97438 * 10 9 7 31 31 H 1.07993 * 119.87455 * 180.02562 * 11 10 9 32 32 H 1.07994 * 119.74504 * 179.97438 * 12 11 10 33 33 H 1.08002 * 119.87296 * 179.97438 * 13 12 11 34 34 H 0.96997 * 120.00117 * 243.84899 * 18 15 14 35 35 H 1.09004 * 109.47253 * 184.99920 * 21 19 18 36 36 H 1.08991 * 109.47270 * 305.00099 * 21 19 18 37 37 H 0.96705 * 113.99632 * 179.97438 * 22 21 19 38 38 H 1.08000 * 120.78585 * 0.02562 * 24 23 19 39 39 H 1.07997 * 120.41490 * 180.22191 * 25 24 23 40 40 H 1.08003 * 119.62048 * 179.74936 * 26 25 24 41 41 H 1.07998 * 119.62036 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2774 2.7464 -0.0006 5 1 3.0960 1.6964 1.2125 6 1 3.0960 1.6963 -1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 2.9952 -1.2654 -0.4351 9 6 1.4224 -2.3666 0.5680 10 6 0.4285 -2.2438 1.5568 11 6 -0.1341 -3.3742 2.1035 12 6 0.2752 -4.6309 1.6840 13 6 1.2540 -4.7638 0.7116 14 6 1.8260 -3.6468 0.1464 15 16 3.0640 -3.8194 -1.0955 16 8 3.2879 -5.2144 -1.2478 17 8 2.6762 -2.9728 -2.1689 18 7 4.4654 -3.1850 -0.4823 19 6 5.0993 -3.8019 0.6854 20 1 4.3457 -4.3261 1.2734 21 6 6.1659 -4.7958 0.2212 22 8 7.2130 -4.0917 -0.4496 23 6 5.7424 -2.7332 1.5312 24 6 5.6658 -2.7917 2.9145 25 6 6.2763 -1.7891 3.6521 26 6 6.9272 -0.7660 2.9886 27 7 6.9758 -0.7401 1.6712 28 6 6.4116 -1.6798 0.9377 29 1 -0.4850 -0.8381 -0.0566 30 1 0.1091 -1.2659 1.8858 31 1 -0.8972 -3.2824 2.8621 32 1 -0.1715 -5.5128 2.1188 33 1 1.5654 -5.7476 0.3927 34 1 4.8665 -2.4049 -0.8963 35 1 6.5754 -5.3192 1.0852 36 1 5.7176 -5.5172 -0.4618 37 1 7.9258 -4.6604 -0.7716 38 1 5.1463 -3.6012 3.4057 39 1 6.2396 -1.8047 4.7313 40 1 7.4018 0.0210 3.5557 41 1 6.4719 -1.6247 -0.1392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434585712.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:45 Heat of formation + Delta-G solvation = -98.936371 kcal Electronic energy + Delta-G solvation = -29525.265778 eV Core-core repulsion = 25495.496815 eV Total energy + Delta-G solvation = -4029.768963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.21209 -39.62576 -38.52877 -38.00694 -36.73600 -36.04062 -35.86614 -33.34288 -32.05600 -31.83963 -31.27607 -29.14344 -27.22042 -24.86206 -24.50553 -23.58636 -23.03674 -22.18538 -20.46695 -20.09063 -18.91930 -18.37679 -18.01983 -17.77093 -17.41439 -16.82035 -16.66358 -16.34290 -15.95181 -15.81255 -15.52797 -15.17175 -14.99093 -14.94887 -14.41235 -14.32747 -14.03487 -13.91074 -13.82348 -13.42611 -13.17999 -13.06262 -12.99559 -12.89771 -12.83413 -12.78997 -12.43440 -12.26100 -12.05673 -11.65111 -11.28917 -11.02481 -10.92876 -10.69077 -10.42569 -10.30775 -10.02660 -9.84115 -9.68383 -9.41748 -6.73571 -0.27416 0.24863 0.41712 0.42328 0.86208 1.43170 1.56118 1.70463 2.19597 2.22201 2.50993 2.88499 2.95808 3.28767 3.33264 3.47283 3.74557 3.80655 3.97396 4.11014 4.16102 4.19566 4.26519 4.31351 4.33490 4.46136 4.63246 4.64307 4.75825 4.80812 4.92627 4.99157 5.09508 5.24275 5.25098 5.37933 5.48184 5.59417 5.63156 5.84135 5.84229 5.95636 6.04850 6.15390 6.50935 6.72567 6.95587 7.09967 7.81210 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.008618 B = 0.006353 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3248.244443 B = 4406.006082 C = 5645.183925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.014 3.986 3 Si 1.096 2.904 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.520 4.520 8 H 0.088 0.912 9 C 0.147 3.853 10 C -0.238 4.238 11 C -0.050 4.050 12 C -0.261 4.261 13 C 0.002 3.998 14 C -0.800 4.800 15 S 2.719 3.281 16 O -0.999 6.999 17 O -1.004 7.004 18 N -1.101 6.101 19 C 0.201 3.799 20 H 0.107 0.893 21 C 0.067 3.933 22 O -0.577 6.577 23 C -0.135 4.135 24 C -0.076 4.076 25 C -0.168 4.168 26 C 0.082 3.918 27 N -0.513 5.513 28 C 0.115 3.885 29 H 0.290 0.710 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.417 0.583 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.395 0.605 38 H 0.154 0.846 39 H 0.166 0.834 40 H 0.179 0.821 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.189 -5.266 7.957 15.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.207 4.207 3 Si 0.913 3.087 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.183 1.183 7 C -0.546 4.546 8 H 0.106 0.894 9 C 0.142 3.858 10 C -0.258 4.258 11 C -0.069 4.069 12 C -0.281 4.281 13 C -0.018 4.018 14 C -0.894 4.894 15 S 2.816 3.184 16 O -0.990 6.990 17 O -0.995 6.995 18 N -0.859 5.859 19 C 0.093 3.907 20 H 0.125 0.875 21 C -0.013 4.013 22 O -0.385 6.385 23 C -0.138 4.138 24 C -0.103 4.103 25 C -0.188 4.188 26 C -0.075 4.075 27 N -0.222 5.222 28 C -0.042 4.042 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.253 0.747 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.245 0.755 38 H 0.171 0.829 39 H 0.184 0.816 40 H 0.196 0.804 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.821 -2.984 6.907 14.013 hybrid contribution -0.580 -2.276 0.477 2.397 sum 11.242 -5.260 7.384 14.442 Atomic orbital electron populations 1.70573 1.08912 1.33727 1.27498 1.28282 0.95562 1.07288 0.89601 0.83279 0.75360 0.70535 0.79566 1.18720 1.18311 1.18290 1.21064 1.04972 0.95482 1.33103 0.89416 1.17204 0.89355 0.90702 0.88525 1.21340 1.04419 0.97799 1.02274 1.21184 0.96294 0.92774 0.96626 1.20865 1.04871 0.97037 1.05287 1.20665 0.92752 0.96163 0.92194 1.30016 1.29802 0.99525 1.30059 1.00442 0.72717 0.71893 0.73387 1.93430 1.86013 1.32983 1.86535 1.93494 1.82708 1.68806 1.54451 1.55439 1.41706 1.45386 1.43389 1.19784 0.94221 0.91768 0.84883 0.87527 1.22666 0.88384 0.92850 0.97353 1.86449 1.35107 1.39036 1.77859 1.20749 1.00253 0.97766 0.95057 1.21803 0.96465 0.99366 0.92637 1.22415 0.98604 0.94924 1.02823 1.23286 0.96078 0.98027 0.90061 1.67696 1.19249 1.26503 1.08742 1.22449 0.92319 0.89213 1.00198 0.89765 0.88495 0.85701 0.85070 0.85367 0.74704 0.90134 0.92240 0.75538 0.82865 0.81609 0.80392 0.83498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.96 12.37 21.83 0.27 -40.69 16 2 C 0.01 0.68 4.89 85.26 0.42 1.09 16 3 Si 1.10 43.01 30.01 68.60 2.06 45.07 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 6 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 7 C -0.52 -26.39 7.69 23.46 0.18 -26.21 16 8 H 0.09 4.29 5.63 -2.91 -0.02 4.27 16 9 C 0.15 7.31 5.31 -21.29 -0.11 7.20 16 10 C -0.24 -11.36 7.98 22.73 0.18 -11.18 16 11 C -0.05 -2.06 10.02 22.22 0.22 -1.83 16 12 C -0.26 -10.09 10.05 22.46 0.23 -9.86 16 13 C 0.00 0.08 9.53 22.22 0.21 0.29 16 14 C -0.80 -36.54 5.70 22.73 0.13 -36.41 16 15 S 2.72 115.87 4.86 -56.49 -0.27 115.59 16 16 O -1.00 -42.01 16.13 -128.00 -2.07 -44.08 16 17 O -1.00 -50.93 16.61 -128.00 -2.13 -53.06 16 18 N -1.10 -38.40 4.45 -172.52 -0.77 -39.16 16 19 C 0.20 5.80 2.83 44.25 0.13 5.93 16 20 H 0.11 3.00 7.68 -2.38 -0.02 2.98 16 21 C 0.07 1.56 6.87 71.98 0.49 2.05 16 22 O -0.58 -12.80 12.06 -148.98 -1.80 -14.59 16 23 C -0.13 -3.82 4.84 -19.77 -0.10 -3.92 16 24 C -0.08 -1.84 9.82 22.47 0.22 -1.62 16 25 C -0.17 -3.57 10.11 22.36 0.23 -3.34 16 26 C 0.08 1.98 11.18 84.69 0.95 2.93 16 27 N -0.51 -15.61 10.36 -195.84 -2.03 -17.64 16 28 C 0.11 3.54 9.34 84.67 0.79 4.33 16 29 H 0.29 15.67 6.73 -92.71 -0.62 15.04 16 30 H 0.10 4.79 6.51 -2.91 -0.02 4.77 16 31 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 32 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 33 H 0.13 4.73 7.33 -2.91 -0.02 4.71 16 34 H 0.42 14.18 6.83 -96.75 -0.66 13.52 16 35 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.06 1.49 7.51 -2.39 -0.02 1.48 16 37 H 0.40 5.09 9.12 -74.05 -0.68 4.42 16 38 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 39 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 40 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 41 H 0.15 4.53 6.59 -2.91 -0.02 4.51 16 Total: -1.00 -69.87 356.71 -2.65 -72.52 By element: Atomic # 1 Polarization: 46.67 SS G_CDS: -0.09 Total: 46.59 kcal Atomic # 6 Polarization: -74.71 SS G_CDS: 4.16 Total: -70.54 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -2.53 Total: -97.50 kcal Atomic # 8 Polarization: -105.74 SS G_CDS: -5.99 Total: -111.73 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.06 Total: 45.07 kcal Atomic # 16 Polarization: 115.87 SS G_CDS: -0.27 Total: 115.59 kcal Total: -69.87 -2.65 -72.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434585712.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.413 kcal (2) G-P(sol) polarization free energy of solvation -69.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds