Wall clock time and date at job start Wed Apr 1 2020 05:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86802 * 120.00350 * 2 1 4 4 H 1.48501 * 109.47539 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46818 * 300.00311 * 3 2 1 6 6 H 1.48499 * 109.46840 * 59.99962 * 3 2 1 7 7 C 1.38655 * 120.00389 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00536 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99635 * 359.97438 * 7 2 1 10 10 C 1.35744 * 117.00159 * 174.96389 * 9 7 2 11 11 C 1.38945 * 120.03493 * 5.36703 * 10 9 7 12 12 C 1.38122 * 120.07514 * 180.02562 * 11 10 9 13 13 C 1.38209 * 120.13495 * 359.69624 * 12 11 10 14 14 C 1.38912 * 120.06419 * 0.56078 * 13 12 11 15 15 N 1.39948 * 120.03291 * 179.74255 * 14 13 12 16 16 C 1.34774 * 120.00130 * 214.84276 * 15 14 13 17 17 O 1.21589 * 119.99776 * 355.50487 * 16 15 14 18 18 N 1.34777 * 120.00193 * 175.49026 * 16 15 14 19 19 C 1.46495 * 120.00038 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47198 * 180.02562 * 19 18 16 21 21 N 1.32117 * 120.01000 * 89.99979 * 20 19 18 22 22 C 1.32144 * 120.01330 * 180.02562 * 21 20 19 23 23 C 1.38348 * 120.03694 * 359.97438 * 22 21 20 24 24 N 1.32148 * 120.01754 * 0.02562 * 23 22 21 25 25 C 1.32244 * 119.98195 * 0.02562 * 24 23 22 26 26 Cl 1.73601 * 120.01688 * 179.97438 * 25 24 23 27 27 C 1.38741 * 120.03577 * 185.34633 * 10 9 7 28 28 H 0.97009 * 119.99976 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.96531 * 359.97438 * 11 10 9 30 30 H 1.08003 * 119.93740 * 180.02562 * 12 11 10 31 31 H 1.07994 * 119.96414 * 180.27698 * 13 12 11 32 32 H 0.97005 * 119.99878 * 34.85297 * 15 14 13 33 33 H 0.96995 * 119.99594 * 0.02562 * 18 16 15 34 34 H 1.09002 * 109.47417 * 60.00515 * 19 18 16 35 35 H 1.09008 * 109.47346 * 300.00669 * 19 18 16 36 36 H 1.08006 * 119.98029 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.98945 * 179.74190 * 23 22 21 38 38 H 1.07997 * 120.06406 * 0.04291 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0699 -3.5045 -0.1072 11 6 3.4577 -3.4383 -0.0978 12 6 4.2066 -4.5937 -0.2069 13 6 3.5785 -5.8197 -0.3194 14 6 2.1914 -5.8921 -0.3348 15 7 1.5560 -7.1333 -0.4542 16 6 0.4008 -7.2358 -1.1407 17 8 -0.1320 -6.2379 -1.5865 18 7 -0.1638 -8.4444 -1.3332 19 6 -1.4192 -8.5558 -2.0799 20 6 -1.8343 -10.0027 -2.1517 21 7 -2.6057 -10.5164 -1.2102 22 6 -2.9693 -11.7852 -1.2728 23 6 -2.5430 -12.5767 -2.3245 24 7 -1.7714 -12.0643 -3.2670 25 6 -1.4063 -10.7948 -3.2045 26 17 -0.3921 -10.1209 -4.4418 27 6 1.4363 -4.7332 -0.2254 28 1 -0.4850 0.8401 0.0004 29 1 3.9515 -2.4822 -0.0059 30 1 5.2853 -4.5396 -0.1989 31 1 4.1667 -6.7217 -0.4000 32 1 1.9471 -7.9199 -0.0427 33 1 0.2612 -9.2403 -0.9774 34 1 -1.2778 -8.1676 -3.0886 35 1 -2.1949 -7.9802 -1.5746 36 1 -3.5996 -12.2047 -0.5026 37 1 -2.8372 -13.6147 -2.3727 38 1 0.3577 -4.7872 -0.2333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434686063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:38 Heat of formation + Delta-G solvation = 31.771575 kcal Electronic energy + Delta-G solvation = -26198.140605 eV Core-core repulsion = 22068.455514 eV Total energy + Delta-G solvation = -4129.685091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.83750 -40.29040 -38.69053 -37.35178 -36.74480 -35.65822 -34.44971 -34.03921 -32.20536 -32.05542 -29.44458 -28.60693 -27.22500 -25.24926 -25.18929 -23.58450 -22.25481 -21.39021 -20.66470 -18.64155 -18.61587 -18.24099 -17.88503 -17.13832 -16.56771 -16.10749 -15.56406 -15.44110 -14.99195 -14.80092 -14.69918 -14.24893 -14.10452 -13.93809 -13.49276 -13.24975 -13.09445 -12.78852 -12.70478 -12.42737 -12.32533 -11.77423 -11.69786 -11.64624 -11.45250 -11.16006 -10.98738 -10.74404 -10.39462 -10.05281 -9.82482 -9.74767 -9.65372 -9.26194 -9.14236 -8.76491 -7.61462 -7.12230 -6.36407 -3.95374 -0.12218 0.32593 1.13247 2.13695 2.40892 2.53763 2.99709 3.17092 3.18815 3.24611 3.33077 3.36650 3.58717 3.60598 4.01897 4.22203 4.32770 4.40037 4.55358 4.66115 5.17978 5.20069 5.35579 5.42118 5.53143 5.67611 5.88737 6.13164 6.18942 6.27984 6.40842 6.45034 6.55251 6.86957 6.95742 7.07902 7.12430 7.25284 7.40894 7.55521 7.87387 8.01865 8.08896 8.66737 9.08638 9.80916 10.81664 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.002073 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.564558 B =13501.724353 C =14014.756181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.390 4.390 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.167 3.833 11 C -0.246 4.246 12 C -0.059 4.059 13 C -0.236 4.236 14 C 0.192 3.808 15 N -0.679 5.679 16 C 0.704 3.296 17 O -0.554 6.554 18 N -0.740 5.740 19 C 0.190 3.810 20 C 0.083 3.917 21 N -0.403 5.403 22 C 0.054 3.946 23 C 0.075 3.925 24 N -0.432 5.432 25 C 0.136 3.864 26 Cl 0.004 6.996 27 C -0.186 4.186 28 H 0.269 0.731 29 H 0.127 0.873 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.401 0.599 33 H 0.394 0.606 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.183 0.817 37 H 0.183 0.817 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.223 -26.727 -3.195 27.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.112 3.888 11 C -0.266 4.266 12 C -0.078 4.078 13 C -0.258 4.258 14 C 0.099 3.901 15 N -0.327 5.327 16 C 0.404 3.596 17 O -0.428 6.428 18 N -0.397 5.397 19 C 0.064 3.936 20 C -0.059 4.059 21 N -0.119 5.119 22 C -0.107 4.107 23 C -0.085 4.085 24 N -0.149 5.149 25 C -0.031 4.031 26 Cl 0.033 6.967 27 C -0.207 4.207 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.236 0.764 33 H 0.227 0.773 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.200 0.800 37 H 0.200 0.800 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.104 -25.507 -3.748 25.967 hybrid contribution 0.918 -0.238 0.193 0.968 sum -2.186 -25.744 -3.556 26.080 Atomic orbital electron populations 1.70067 1.05946 1.27444 1.46104 1.25299 0.95831 0.98814 0.96687 0.85650 0.79116 0.80465 0.78175 1.19107 1.20194 1.20221 1.21390 0.91821 0.80816 1.52651 0.88961 1.83993 1.34237 1.11324 1.78153 1.19142 0.89977 0.87875 0.91783 1.21175 0.93781 0.99050 1.12579 1.20479 0.98327 0.91665 0.97321 1.20232 0.91766 0.97692 1.16094 1.16931 0.90492 0.83102 0.99623 1.42404 1.24101 1.10315 1.55832 1.15819 0.80936 0.83374 0.79490 1.91047 1.62978 1.34621 1.54166 1.44831 1.25921 1.07860 1.61135 1.19938 0.86674 0.87914 0.99036 1.22042 0.95388 0.97821 0.90618 1.68493 1.07220 1.12914 1.23235 1.24030 0.98116 0.89841 0.98690 1.23926 0.92833 1.02118 0.89655 1.67925 1.09768 1.10978 1.26194 1.22810 0.96157 0.91568 0.92594 1.98474 1.64536 1.82058 1.51663 1.20198 1.00791 0.89126 1.10599 0.92129 0.85506 0.87096 0.87489 0.76433 0.77282 0.88633 0.88450 0.80013 0.80036 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.11 13.67 55.48 0.76 -25.35 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.39 -11.26 9.49 30.89 0.29 -10.96 16 8 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16 9 O -0.17 -5.21 9.75 0.06 0.00 -5.21 16 10 C 0.17 4.27 6.64 -39.13 -0.26 4.01 16 11 C -0.25 -5.49 9.17 -39.36 -0.36 -5.85 16 12 C -0.06 -1.09 10.03 -39.63 -0.40 -1.49 16 13 C -0.24 -4.08 9.96 -39.34 -0.39 -4.47 16 14 C 0.19 3.63 6.30 -83.71 -0.53 3.11 16 15 N -0.68 -9.93 5.34 -14.24 -0.08 -10.01 16 16 C 0.70 11.05 8.41 -86.92 -0.73 10.31 16 17 O -0.55 -11.55 13.78 5.29 0.07 -11.47 16 18 N -0.74 -8.23 5.55 -66.41 -0.37 -8.60 16 19 C 0.19 2.06 5.58 -5.20 -0.03 2.03 16 20 C 0.08 0.76 6.16 -82.37 -0.51 0.25 16 21 N -0.40 -3.44 10.42 -9.26 -0.10 -3.53 16 22 C 0.05 0.28 11.22 -17.38 -0.20 0.08 16 23 C 0.08 0.38 11.22 -17.38 -0.20 0.18 16 24 N -0.43 -3.60 10.49 -10.17 -0.11 -3.71 16 25 C 0.14 1.24 7.28 -17.27 -0.13 1.11 16 26 Cl 0.00 0.04 27.48 -51.86 -1.42 -1.39 16 27 C -0.19 -4.34 8.64 -39.21 -0.34 -4.68 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.13 2.81 5.63 -52.49 -0.30 2.51 16 30 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 31 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.40 4.12 8.84 -40.82 -0.36 3.76 16 33 H 0.39 3.27 8.48 -40.82 -0.35 2.93 16 34 H 0.10 1.08 6.91 -51.93 -0.36 0.72 16 35 H 0.10 1.16 8.14 -51.92 -0.42 0.73 16 36 H 0.18 0.29 8.06 -52.48 -0.42 -0.14 16 37 H 0.18 0.21 8.06 -52.48 -0.42 -0.21 16 38 H 0.14 3.43 6.22 -52.49 -0.33 3.11 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -36.88 352.92 -8.02 -44.89 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -3.21 Total: 8.42 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -3.86 Total: -5.39 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.11 Total: -51.20 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.07 Total: -16.69 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.42 Total: -1.39 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.88 -8.02 -44.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434686063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.666 kcal (2) G-P(sol) polarization free energy of solvation -36.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds