Wall clock time and date at job start Wed Apr 1 2020 05:12:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31550 * 1
3 3 Si 1.86802 * 120.00350 * 2 1
4 4 H 1.48501 * 109.47539 * 180.02562 * 3 2 1
5 5 H 1.48507 * 109.46818 * 300.00311 * 3 2 1
6 6 H 1.48499 * 109.46840 * 59.99962 * 3 2 1
7 7 C 1.38655 * 120.00389 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00536 * 179.97438 * 7 2 1
9 9 O 1.34834 * 119.99635 * 359.97438 * 7 2 1
10 10 C 1.35744 * 117.00159 * 174.96389 * 9 7 2
11 11 C 1.38945 * 120.03493 * 5.36703 * 10 9 7
12 12 C 1.38122 * 120.07514 * 180.02562 * 11 10 9
13 13 C 1.38209 * 120.13495 * 359.69624 * 12 11 10
14 14 C 1.38912 * 120.06419 * 0.56078 * 13 12 11
15 15 N 1.39948 * 120.03291 * 179.74255 * 14 13 12
16 16 C 1.34774 * 120.00130 * 214.84276 * 15 14 13
17 17 O 1.21589 * 119.99776 * 355.50487 * 16 15 14
18 18 N 1.34777 * 120.00193 * 175.49026 * 16 15 14
19 19 C 1.46495 * 120.00038 * 180.02562 * 18 16 15
20 20 C 1.50699 * 109.47198 * 180.02562 * 19 18 16
21 21 N 1.32117 * 120.01000 * 89.99979 * 20 19 18
22 22 C 1.32144 * 120.01330 * 180.02562 * 21 20 19
23 23 C 1.38348 * 120.03694 * 359.97438 * 22 21 20
24 24 N 1.32148 * 120.01754 * 0.02562 * 23 22 21
25 25 C 1.32244 * 119.98195 * 0.02562 * 24 23 22
26 26 Cl 1.73601 * 120.01688 * 179.97438 * 25 24 23
27 27 C 1.38741 * 120.03577 * 185.34633 * 10 9 7
28 28 H 0.97009 * 119.99976 * 359.97438 * 1 2 3
29 29 H 1.08000 * 119.96531 * 359.97438 * 11 10 9
30 30 H 1.08003 * 119.93740 * 180.02562 * 12 11 10
31 31 H 1.07994 * 119.96414 * 180.27698 * 13 12 11
32 32 H 0.97005 * 119.99878 * 34.85297 * 15 14 13
33 33 H 0.96995 * 119.99594 * 0.02562 * 18 16 15
34 34 H 1.09002 * 109.47417 * 60.00515 * 19 18 16
35 35 H 1.09008 * 109.47346 * 300.00669 * 19 18 16
36 36 H 1.08006 * 119.98029 * 179.97438 * 22 21 20
37 37 H 1.08003 * 119.98945 * 179.74190 * 23 22 21
38 38 H 1.07997 * 120.06406 * 0.04291 * 27 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2496 1.6177 0.0000
4 1 3.7096 1.3464 -0.0006
5 1 1.8908 2.3964 -1.2125
6 1 1.8909 2.3964 1.2125
7 6 2.0088 -1.2007 -0.0005
8 1 3.0888 -1.2008 -0.0010
9 8 1.3347 -2.3684 -0.0005
10 6 2.0699 -3.5045 -0.1072
11 6 3.4577 -3.4383 -0.0978
12 6 4.2066 -4.5937 -0.2069
13 6 3.5785 -5.8197 -0.3194
14 6 2.1914 -5.8921 -0.3348
15 7 1.5560 -7.1333 -0.4542
16 6 0.4008 -7.2358 -1.1407
17 8 -0.1320 -6.2379 -1.5865
18 7 -0.1638 -8.4444 -1.3332
19 6 -1.4192 -8.5558 -2.0799
20 6 -1.8343 -10.0027 -2.1517
21 7 -2.6057 -10.5164 -1.2102
22 6 -2.9693 -11.7852 -1.2728
23 6 -2.5430 -12.5767 -2.3245
24 7 -1.7714 -12.0643 -3.2670
25 6 -1.4063 -10.7948 -3.2045
26 17 -0.3921 -10.1209 -4.4418
27 6 1.4363 -4.7332 -0.2254
28 1 -0.4850 0.8401 0.0004
29 1 3.9515 -2.4822 -0.0059
30 1 5.2853 -4.5396 -0.1989
31 1 4.1667 -6.7217 -0.4000
32 1 1.9471 -7.9199 -0.0427
33 1 0.2612 -9.2403 -0.9774
34 1 -1.2778 -8.1676 -3.0886
35 1 -2.1949 -7.9802 -1.5746
36 1 -3.5996 -12.2047 -0.5026
37 1 -2.8372 -13.6147 -2.3727
38 1 0.3577 -4.7872 -0.2333
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001434686063.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:12:38
Heat of formation + Delta-G solvation = 31.771575 kcal
Electronic energy + Delta-G solvation = -26198.140605 eV
Core-core repulsion = 22068.455514 eV
Total energy + Delta-G solvation = -4129.685091 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 348.078 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.83750 -40.29040 -38.69053 -37.35178 -36.74480 -35.65822 -34.44971 -34.03921
-32.20536 -32.05542 -29.44458 -28.60693 -27.22500 -25.24926 -25.18929 -23.58450
-22.25481 -21.39021 -20.66470 -18.64155 -18.61587 -18.24099 -17.88503 -17.13832
-16.56771 -16.10749 -15.56406 -15.44110 -14.99195 -14.80092 -14.69918 -14.24893
-14.10452 -13.93809 -13.49276 -13.24975 -13.09445 -12.78852 -12.70478 -12.42737
-12.32533 -11.77423 -11.69786 -11.64624 -11.45250 -11.16006 -10.98738 -10.74404
-10.39462 -10.05281 -9.82482 -9.74767 -9.65372 -9.26194 -9.14236 -8.76491
-7.61462 -7.12230 -6.36407 -3.95374 -0.12218 0.32593 1.13247 2.13695
2.40892 2.53763 2.99709 3.17092 3.18815 3.24611 3.33077 3.36650
3.58717 3.60598 4.01897 4.22203 4.32770 4.40037 4.55358 4.66115
5.17978 5.20069 5.35579 5.42118 5.53143 5.67611 5.88737 6.13164
6.18942 6.27984 6.40842 6.45034 6.55251 6.86957 6.95742 7.07902
7.12430 7.25284 7.40894 7.55521 7.87387 8.01865 8.08896 8.66737
9.08638 9.80916 10.81664
Molecular weight = 348.08amu
Principal moments of inertia in cm(-1)
A = 0.018920 B = 0.002073 C = 0.001997
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1479.564558 B =13501.724353 C =14014.756181
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.861 5.861
2 C 0.038 3.962
3 Si 0.941 3.059
4 H -0.267 1.267
5 H -0.276 1.276
6 H -0.277 1.277
7 C -0.390 4.390
8 H 0.093 0.907
9 O -0.174 6.174
10 C 0.167 3.833
11 C -0.246 4.246
12 C -0.059 4.059
13 C -0.236 4.236
14 C 0.192 3.808
15 N -0.679 5.679
16 C 0.704 3.296
17 O -0.554 6.554
18 N -0.740 5.740
19 C 0.190 3.810
20 C 0.083 3.917
21 N -0.403 5.403
22 C 0.054 3.946
23 C 0.075 3.925
24 N -0.432 5.432
25 C 0.136 3.864
26 Cl 0.004 6.996
27 C -0.186 4.186
28 H 0.269 0.731
29 H 0.127 0.873
30 H 0.111 0.889
31 H 0.107 0.893
32 H 0.401 0.599
33 H 0.394 0.606
34 H 0.096 0.904
35 H 0.097 0.903
36 H 0.183 0.817
37 H 0.183 0.817
38 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.223 -26.727 -3.195 27.009
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.496 5.496
2 C -0.166 4.166
3 Si 0.766 3.234
4 H -0.191 1.191
5 H -0.202 1.202
6 H -0.202 1.202
7 C -0.467 4.467
8 H 0.110 0.890
9 O -0.077 6.077
10 C 0.112 3.888
11 C -0.266 4.266
12 C -0.078 4.078
13 C -0.258 4.258
14 C 0.099 3.901
15 N -0.327 5.327
16 C 0.404 3.596
17 O -0.428 6.428
18 N -0.397 5.397
19 C 0.064 3.936
20 C -0.059 4.059
21 N -0.119 5.119
22 C -0.107 4.107
23 C -0.085 4.085
24 N -0.149 5.149
25 C -0.031 4.031
26 Cl 0.033 6.967
27 C -0.207 4.207
28 H 0.079 0.921
29 H 0.145 0.855
30 H 0.129 0.871
31 H 0.125 0.875
32 H 0.236 0.764
33 H 0.227 0.773
34 H 0.114 0.886
35 H 0.115 0.885
36 H 0.200 0.800
37 H 0.200 0.800
38 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -3.104 -25.507 -3.748 25.967
hybrid contribution 0.918 -0.238 0.193 0.968
sum -2.186 -25.744 -3.556 26.080
Atomic orbital electron populations
1.70067 1.05946 1.27444 1.46104 1.25299 0.95831 0.98814 0.96687
0.85650 0.79116 0.80465 0.78175 1.19107 1.20194 1.20221 1.21390
0.91821 0.80816 1.52651 0.88961 1.83993 1.34237 1.11324 1.78153
1.19142 0.89977 0.87875 0.91783 1.21175 0.93781 0.99050 1.12579
1.20479 0.98327 0.91665 0.97321 1.20232 0.91766 0.97692 1.16094
1.16931 0.90492 0.83102 0.99623 1.42404 1.24101 1.10315 1.55832
1.15819 0.80936 0.83374 0.79490 1.91047 1.62978 1.34621 1.54166
1.44831 1.25921 1.07860 1.61135 1.19938 0.86674 0.87914 0.99036
1.22042 0.95388 0.97821 0.90618 1.68493 1.07220 1.12914 1.23235
1.24030 0.98116 0.89841 0.98690 1.23926 0.92833 1.02118 0.89655
1.67925 1.09768 1.10978 1.26194 1.22810 0.96157 0.91568 0.92594
1.98474 1.64536 1.82058 1.51663 1.20198 1.00791 0.89126 1.10599
0.92129 0.85506 0.87096 0.87489 0.76433 0.77282 0.88633 0.88450
0.80013 0.80036 0.84613
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -26.11 13.67 55.48 0.76 -25.35 16
2 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16
3 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16
4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16
5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16
6 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16
7 C -0.39 -11.26 9.49 30.89 0.29 -10.96 16
8 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16
9 O -0.17 -5.21 9.75 0.06 0.00 -5.21 16
10 C 0.17 4.27 6.64 -39.13 -0.26 4.01 16
11 C -0.25 -5.49 9.17 -39.36 -0.36 -5.85 16
12 C -0.06 -1.09 10.03 -39.63 -0.40 -1.49 16
13 C -0.24 -4.08 9.96 -39.34 -0.39 -4.47 16
14 C 0.19 3.63 6.30 -83.71 -0.53 3.11 16
15 N -0.68 -9.93 5.34 -14.24 -0.08 -10.01 16
16 C 0.70 11.05 8.41 -86.92 -0.73 10.31 16
17 O -0.55 -11.55 13.78 5.29 0.07 -11.47 16
18 N -0.74 -8.23 5.55 -66.41 -0.37 -8.60 16
19 C 0.19 2.06 5.58 -5.20 -0.03 2.03 16
20 C 0.08 0.76 6.16 -82.37 -0.51 0.25 16
21 N -0.40 -3.44 10.42 -9.26 -0.10 -3.53 16
22 C 0.05 0.28 11.22 -17.38 -0.20 0.08 16
23 C 0.08 0.38 11.22 -17.38 -0.20 0.18 16
24 N -0.43 -3.60 10.49 -10.17 -0.11 -3.71 16
25 C 0.14 1.24 7.28 -17.27 -0.13 1.11 16
26 Cl 0.00 0.04 27.48 -51.86 -1.42 -1.39 16
27 C -0.19 -4.34 8.64 -39.21 -0.34 -4.68 16
28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16
29 H 0.13 2.81 5.63 -52.49 -0.30 2.51 16
30 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16
31 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16
32 H 0.40 4.12 8.84 -40.82 -0.36 3.76 16
33 H 0.39 3.27 8.48 -40.82 -0.35 2.93 16
34 H 0.10 1.08 6.91 -51.93 -0.36 0.72 16
35 H 0.10 1.16 8.14 -51.92 -0.42 0.73 16
36 H 0.18 0.29 8.06 -52.48 -0.42 -0.14 16
37 H 0.18 0.21 8.06 -52.48 -0.42 -0.21 16
38 H 0.14 3.43 6.22 -52.49 -0.33 3.11 16
LS Contribution 352.92 15.07 5.32 5.32
Total: -1.00 -36.88 352.92 -8.02 -44.89
By element:
Atomic # 1 Polarization: 11.63 SS G_CDS: -3.21 Total: 8.42 kcal
Atomic # 6 Polarization: -1.53 SS G_CDS: -3.86 Total: -5.39 kcal
Atomic # 7 Polarization: -51.31 SS G_CDS: 0.11 Total: -51.20 kcal
Atomic # 8 Polarization: -16.76 SS G_CDS: 0.07 Total: -16.69 kcal
Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal
Atomic # 17 Polarization: 0.04 SS G_CDS: -1.42 Total: -1.39 kcal
Total LS contribution 5.32 Total: 5.32 kcal
Total: -36.88 -8.02 -44.89 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001434686063.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.666 kcal
(2) G-P(sol) polarization free energy of solvation -36.877 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.789 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.895 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.772 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds