Wall clock time and date at job start Wed Apr 1 2020 05:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86802 * 120.00350 * 2 1 4 4 H 1.48501 * 109.47539 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46818 * 300.00311 * 3 2 1 6 6 H 1.48499 * 109.46840 * 59.99962 * 3 2 1 7 7 C 1.38655 * 120.00389 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00536 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99635 * 359.97438 * 7 2 1 10 10 C 1.35744 * 117.00159 * 174.96389 * 9 7 2 11 11 C 1.38945 * 120.03493 * 5.36703 * 10 9 7 12 12 C 1.38122 * 120.07514 * 180.02562 * 11 10 9 13 13 C 1.38209 * 120.13495 * 359.69624 * 12 11 10 14 14 C 1.38912 * 120.06419 * 0.56078 * 13 12 11 15 15 N 1.39948 * 120.03291 * 179.74255 * 14 13 12 16 16 C 1.34774 * 120.00130 * 214.84276 * 15 14 13 17 17 O 1.21589 * 119.99776 * 355.50487 * 16 15 14 18 18 N 1.34777 * 120.00193 * 175.49026 * 16 15 14 19 19 C 1.46495 * 120.00038 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47198 * 180.02562 * 19 18 16 21 21 N 1.32117 * 120.01000 * 89.99979 * 20 19 18 22 22 C 1.32144 * 120.01330 * 180.02562 * 21 20 19 23 23 C 1.38348 * 120.03694 * 359.97438 * 22 21 20 24 24 N 1.32148 * 120.01754 * 0.02562 * 23 22 21 25 25 C 1.32244 * 119.98195 * 0.02562 * 24 23 22 26 26 Cl 1.73601 * 120.01688 * 179.97438 * 25 24 23 27 27 C 1.38741 * 120.03577 * 185.34633 * 10 9 7 28 28 H 0.97009 * 119.99976 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.96531 * 359.97438 * 11 10 9 30 30 H 1.08003 * 119.93740 * 180.02562 * 12 11 10 31 31 H 1.07994 * 119.96414 * 180.27698 * 13 12 11 32 32 H 0.97005 * 119.99878 * 34.85297 * 15 14 13 33 33 H 0.96995 * 119.99594 * 0.02562 * 18 16 15 34 34 H 1.09002 * 109.47417 * 60.00515 * 19 18 16 35 35 H 1.09008 * 109.47346 * 300.00669 * 19 18 16 36 36 H 1.08006 * 119.98029 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.98945 * 179.74190 * 23 22 21 38 38 H 1.07997 * 120.06406 * 0.04291 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0699 -3.5045 -0.1072 11 6 3.4577 -3.4383 -0.0978 12 6 4.2066 -4.5937 -0.2069 13 6 3.5785 -5.8197 -0.3194 14 6 2.1914 -5.8921 -0.3348 15 7 1.5560 -7.1333 -0.4542 16 6 0.4008 -7.2358 -1.1407 17 8 -0.1320 -6.2379 -1.5865 18 7 -0.1638 -8.4444 -1.3332 19 6 -1.4192 -8.5558 -2.0799 20 6 -1.8343 -10.0027 -2.1517 21 7 -2.6057 -10.5164 -1.2102 22 6 -2.9693 -11.7852 -1.2728 23 6 -2.5430 -12.5767 -2.3245 24 7 -1.7714 -12.0643 -3.2670 25 6 -1.4063 -10.7948 -3.2045 26 17 -0.3921 -10.1209 -4.4418 27 6 1.4363 -4.7332 -0.2254 28 1 -0.4850 0.8401 0.0004 29 1 3.9515 -2.4822 -0.0059 30 1 5.2853 -4.5396 -0.1989 31 1 4.1667 -6.7217 -0.4000 32 1 1.9471 -7.9199 -0.0427 33 1 0.2612 -9.2403 -0.9774 34 1 -1.2778 -8.1676 -3.0886 35 1 -2.1949 -7.9802 -1.5746 36 1 -3.5996 -12.2047 -0.5026 37 1 -2.8372 -13.6147 -2.3727 38 1 0.3577 -4.7872 -0.2333 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434686063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:37 Heat of formation + Delta-G solvation = 2.027880 kcal Electronic energy + Delta-G solvation = -26199.430389 eV Core-core repulsion = 22068.455514 eV Total energy + Delta-G solvation = -4130.974874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.43380 -41.65868 -40.42552 -38.39803 -38.00306 -36.64474 -35.56629 -35.20144 -34.23794 -32.82386 -31.09984 -30.08115 -28.19156 -27.27754 -25.78008 -24.48654 -23.61699 -23.03273 -22.07234 -20.01800 -19.86058 -19.20858 -18.94790 -18.43255 -17.72382 -16.84118 -16.80843 -16.69859 -16.61349 -16.08509 -15.97681 -15.56303 -15.53942 -15.39023 -14.91253 -14.57417 -14.21162 -14.15520 -13.78315 -13.57334 -13.40677 -13.16499 -12.92889 -12.90965 -12.69422 -12.44611 -12.34932 -12.28201 -12.07216 -11.61068 -11.30971 -10.97075 -10.75911 -10.40043 -10.35677 -10.31108 -9.28207 -8.83247 -8.44313 -6.13639 -0.67882 -0.22466 0.49861 0.50292 0.74388 1.35329 1.44388 1.46132 1.55494 2.00817 2.19712 2.38437 2.69739 2.86248 3.01619 3.10381 3.12055 3.21024 3.60580 3.77024 3.89116 4.18516 4.26359 4.36576 4.40063 4.45650 4.50928 4.72483 4.78428 5.03569 5.07296 5.14131 5.16876 5.39818 5.49742 5.67318 5.77944 5.85833 5.92924 6.06538 6.24581 6.42951 6.89551 6.99481 7.42319 7.83402 8.79906 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.002073 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.564558 B =13501.724353 C =14014.756181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.029 4.029 3 Si 1.024 2.976 4 H -0.246 1.246 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.412 4.412 8 H 0.107 0.893 9 O -0.236 6.236 10 C 0.126 3.874 11 C -0.255 4.255 12 C -0.048 4.048 13 C -0.203 4.203 14 C 0.202 3.798 15 N -0.663 5.663 16 C 0.701 3.299 17 O -0.610 6.610 18 N -0.715 5.715 19 C 0.192 3.808 20 C 0.073 3.927 21 N -0.428 5.428 22 C 0.066 3.934 23 C 0.092 3.908 24 N -0.453 5.453 25 C 0.127 3.873 26 Cl -0.012 7.012 27 C -0.212 4.212 28 H 0.271 0.729 29 H 0.123 0.877 30 H 0.160 0.840 31 H 0.164 0.836 32 H 0.427 0.573 33 H 0.412 0.588 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.223 0.777 37 H 0.227 0.773 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.333 -30.567 -2.735 30.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.226 4.226 3 Si 0.843 3.157 4 H -0.169 1.169 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.488 4.488 8 H 0.124 0.876 9 O -0.143 6.143 10 C 0.075 3.925 11 C -0.275 4.275 12 C -0.067 4.067 13 C -0.224 4.224 14 C 0.107 3.893 15 N -0.312 5.312 16 C 0.402 3.598 17 O -0.488 6.488 18 N -0.372 5.372 19 C 0.066 3.934 20 C -0.066 4.066 21 N -0.143 5.143 22 C -0.096 4.096 23 C -0.069 4.069 24 N -0.170 5.170 25 C -0.038 4.038 26 Cl 0.017 6.983 27 C -0.234 4.234 28 H 0.080 0.920 29 H 0.141 0.859 30 H 0.178 0.822 31 H 0.181 0.819 32 H 0.267 0.733 33 H 0.248 0.752 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.240 0.760 37 H 0.243 0.757 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.486 -29.466 -3.285 29.652 hybrid contribution 0.099 0.411 0.071 0.429 sum -0.387 -29.054 -3.214 29.234 Atomic orbital electron populations 1.70237 1.08285 1.28655 1.49208 1.26720 0.96881 1.03048 0.95956 0.84464 0.78377 0.74443 0.78444 1.16941 1.19579 1.19277 1.21957 0.92695 0.81274 1.52839 0.87569 1.83960 1.36230 1.12698 1.81368 1.19681 0.91730 0.87399 0.93707 1.21319 0.92451 1.00768 1.12984 1.21021 1.00535 0.90345 0.94783 1.20852 0.90823 0.99460 1.11267 1.17053 0.91405 0.83152 0.97733 1.42166 1.23700 1.09818 1.55553 1.16019 0.80894 0.83764 0.79155 1.91038 1.64475 1.36994 1.56341 1.44571 1.25644 1.06957 1.60039 1.19827 0.85804 0.89631 0.98098 1.21535 0.96887 0.96624 0.91597 1.68470 1.07594 1.14849 1.23435 1.24758 0.97086 0.88405 0.99318 1.24723 0.90433 1.03769 0.88022 1.67972 1.10965 1.10466 1.27594 1.22667 0.96730 0.92111 0.92331 1.98462 1.65097 1.82428 1.52325 1.20205 0.99730 0.90618 1.12835 0.91953 0.85941 0.82228 0.81865 0.73331 0.75167 0.89547 0.90140 0.76017 0.75684 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.13 13.67 21.61 0.30 -59.83 16 2 C -0.03 -1.76 5.49 84.83 0.47 -1.29 16 3 Si 1.02 44.64 29.55 68.60 2.03 46.67 16 4 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.41 -25.17 9.49 67.92 0.64 -24.53 16 8 H 0.11 5.86 5.20 -2.91 -0.02 5.85 16 9 O -0.24 -15.34 9.75 -22.71 -0.22 -15.56 16 10 C 0.13 6.80 6.64 22.56 0.15 6.95 16 11 C -0.26 -11.39 9.17 22.41 0.21 -11.19 16 12 C -0.05 -1.60 10.03 22.24 0.22 -1.38 16 13 C -0.20 -6.08 9.96 22.42 0.22 -5.86 16 14 C 0.20 7.37 6.30 38.13 0.24 7.61 16 15 N -0.66 -18.24 5.34 -317.23 -1.69 -19.94 16 16 C 0.70 22.27 8.41 179.06 1.51 23.77 16 17 O -0.61 -27.10 13.78 -4.00 -0.06 -27.15 16 18 N -0.71 -15.71 5.55 -482.30 -2.68 -18.39 16 19 C 0.19 4.33 5.58 85.63 0.48 4.81 16 20 C 0.07 1.31 6.16 42.58 0.26 1.57 16 21 N -0.43 -6.58 10.42 -183.20 -1.91 -8.49 16 22 C 0.07 0.45 11.22 84.67 0.95 1.40 16 23 C 0.09 0.58 11.22 84.67 0.95 1.53 16 24 N -0.45 -6.56 10.49 -186.09 -1.95 -8.51 16 25 C 0.13 2.20 7.28 84.70 0.62 2.82 16 26 Cl -0.01 -0.22 27.48 -2.72 -0.07 -0.29 16 27 C -0.21 -10.46 8.64 22.51 0.19 -10.26 16 28 H 0.27 16.07 8.31 -92.70 -0.77 15.30 16 29 H 0.12 5.47 5.63 -2.91 -0.02 5.46 16 30 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 31 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.43 7.21 8.84 -92.70 -0.82 6.39 16 33 H 0.41 6.15 8.48 -92.71 -0.79 5.37 16 34 H 0.09 2.11 6.91 -2.39 -0.02 2.09 16 35 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.22 -0.40 8.06 -2.91 -0.02 -0.43 16 37 H 0.23 -0.70 8.06 -2.91 -0.02 -0.72 16 38 H 0.10 5.66 6.22 -2.91 -0.02 5.64 16 Total: -1.00 -92.10 352.92 0.41 -91.68 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -0.43 Total: 23.86 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 7.11 Total: -4.05 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -7.94 Total: -115.16 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -0.28 Total: -42.71 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -0.07 Total: -0.29 kcal Total: -92.10 0.41 -91.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434686063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.711 kcal (2) G-P(sol) polarization free energy of solvation -92.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds