Wall clock time and date at job start Wed Apr 1 2020 04:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35656 * 116.99983 * 2 1 4 4 C 1.38711 * 120.14873 * 359.72621 * 3 2 1 5 5 C 1.38058 * 120.07974 * 179.78810 * 4 3 2 6 6 C 1.38544 * 120.38817 * 0.46739 * 5 4 3 7 7 N 1.48025 * 119.84744 * 179.76945 * 6 5 4 8 8 O 1.21792 * 120.00425 * 180.02562 * 7 6 5 9 9 O 1.21804 * 119.99827 * 0.02562 * 7 6 5 10 10 C 1.37786 * 120.30439 * 359.78347 * 6 5 4 11 11 C 1.39703 * 119.90816 * 359.97438 * 10 6 5 12 12 C 1.47535 * 120.19276 * 179.97438 * 11 10 6 13 13 O 1.21586 * 119.99778 * 180.02562 * 12 11 10 14 14 N 1.34773 * 119.99741 * 0.02562 * 12 11 10 15 15 C 1.46506 * 119.99971 * 179.97438 * 14 12 11 16 16 H 1.09007 * 109.46995 * 325.00374 * 15 14 12 17 17 C 1.50699 * 109.47387 * 205.00152 * 15 14 12 18 18 H 1.07998 * 119.99851 * 274.94183 * 17 15 14 19 19 C 1.37875 * 119.99949 * 94.93859 * 17 15 14 20 20 N 1.31518 * 119.99989 * 184.87674 * 19 17 15 21 21 Si 1.86796 * 119.99927 * 4.88278 * 19 17 15 22 22 H 1.48503 * 109.47224 * 84.80996 * 21 19 17 23 23 H 1.48506 * 109.46846 * 204.80413 * 21 19 17 24 24 H 1.48493 * 109.47563 * 324.80544 * 21 19 17 25 25 C 1.53004 * 109.46867 * 84.99969 * 15 14 12 26 26 F 1.39902 * 109.47165 * 54.94237 * 25 15 14 27 27 F 1.39900 * 109.46672 * 174.94099 * 25 15 14 28 28 F 1.39901 * 109.47126 * 294.93632 * 25 15 14 29 29 H 1.09002 * 109.46969 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47285 * 299.99855 * 1 2 3 31 31 H 1.08997 * 109.47076 * 59.99477 * 1 2 3 32 32 H 1.08002 * 119.95656 * 0.02562 * 4 3 2 33 33 H 1.07995 * 119.80251 * 180.21367 * 5 4 3 34 34 H 1.08006 * 120.04470 * 179.97438 * 10 6 5 35 35 H 0.96996 * 120.00447 * 0.02562 * 14 12 11 36 36 H 0.97000 * 120.00009 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2924 2.3740 -0.0057 5 6 1.9207 3.6033 -0.0013 6 6 3.3038 3.6836 -0.0009 7 7 3.9649 5.0080 -0.0013 8 8 5.1806 5.0819 -0.0014 9 8 3.2931 6.0240 -0.0015 10 6 4.0668 2.5363 -0.0004 11 6 3.4441 1.2857 0.0002 12 6 4.2550 0.0531 0.0002 13 8 3.7094 -1.0335 0.0003 14 7 5.6004 0.1317 0.0001 15 6 6.4057 -1.0922 0.0006 16 1 5.9021 -1.8582 0.5905 17 6 7.7576 -0.8039 0.6009 18 1 8.5495 -0.4076 -0.0173 19 6 7.9833 -1.0458 1.9393 20 7 9.1307 -0.7055 2.4847 21 14 6.6597 -1.8573 2.9780 22 1 6.7550 -3.3325 2.8372 23 1 6.8494 -1.4828 4.4025 24 1 5.3226 -1.4017 2.5203 25 6 6.5809 -1.5880 -1.4362 26 9 7.1218 -0.5634 -2.2204 27 9 7.4438 -2.6891 -1.4475 28 9 5.3372 -1.9649 -1.9544 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.2138 2.3194 -0.0098 33 1 1.3304 4.5077 -0.0023 34 1 5.1447 2.6037 -0.0005 35 1 6.0357 0.9985 0.0004 36 1 9.2897 -0.8761 3.4263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462889728.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:58 Heat of formation + Delta-G solvation = -199.773742 kcal Electronic energy + Delta-G solvation = -31599.896162 eV Core-core repulsion = 26445.311857 eV Total energy + Delta-G solvation = -5154.584306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.081 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.11419 -46.63853 -46.59141 -42.22335 -40.88317 -38.90284 -37.80936 -36.56933 -34.92671 -32.84765 -32.04433 -31.46049 -29.19050 -27.97323 -26.03207 -25.02943 -24.45843 -22.49690 -21.56993 -20.42983 -19.44850 -18.72960 -18.60067 -18.09819 -17.59841 -17.54691 -16.98240 -16.81457 -16.53434 -16.27245 -16.22375 -15.29347 -15.19067 -14.32419 -14.30049 -14.00533 -13.81368 -13.51642 -13.51177 -13.14197 -13.07262 -13.01174 -12.80540 -12.74635 -12.63831 -12.55185 -11.91137 -11.77274 -11.74299 -11.55285 -11.26371 -11.22003 -11.14443 -10.79788 -10.22528 -9.89754 -9.78400 -9.65594 -9.05934 -9.04292 -8.55351 -6.59637 -4.75655 -0.23648 0.32909 1.19544 1.32584 2.61621 2.70305 3.03982 3.14490 3.21929 3.34600 3.50971 3.88071 3.99633 4.03388 4.10766 4.26775 4.50707 4.69303 4.75337 4.77867 4.88892 5.05254 5.08252 5.11796 5.15491 5.21620 5.33124 5.38412 5.55269 5.75438 6.19231 6.30828 6.75603 6.81381 6.95593 7.61882 7.75535 8.12048 8.46242 8.60437 8.95395 10.48467 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.009872 B = 0.004501 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.684460 B = 6218.852596 C = 7014.997828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.261 6.261 3 C 0.231 3.769 4 C -0.221 4.221 5 C 0.004 3.996 6 C -0.094 4.094 7 N 0.037 4.963 8 O -0.155 6.155 9 O -0.172 6.172 10 C 0.018 3.982 11 C -0.160 4.160 12 C 0.546 3.454 13 O -0.513 6.513 14 N -0.707 5.707 15 C 0.204 3.796 16 H 0.092 0.908 17 C -0.538 4.538 18 H 0.096 0.904 19 C 0.101 3.899 20 N -0.854 5.854 21 Si 0.865 3.135 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.255 1.255 25 C 0.438 3.562 26 F -0.191 7.191 27 F -0.180 7.180 28 F -0.196 7.196 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.167 0.833 35 H 0.399 0.601 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.878 5.252 -3.550 18.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.170 6.170 3 C 0.180 3.820 4 C -0.240 4.240 5 C -0.015 4.015 6 C -0.178 4.178 7 N 0.555 4.445 8 O -0.372 6.372 9 O -0.385 6.385 10 C -0.002 4.002 11 C -0.165 4.165 12 C 0.331 3.669 13 O -0.390 6.390 14 N -0.360 5.360 15 C 0.101 3.899 16 H 0.110 0.890 17 C -0.575 4.575 18 H 0.114 0.886 19 C -0.110 4.110 20 N -0.486 5.486 21 Si 0.690 3.310 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.179 1.179 25 C 0.382 3.618 26 F -0.173 7.173 27 F -0.162 7.162 28 F -0.177 7.177 29 H 0.128 0.872 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.174 0.826 33 H 0.176 0.824 34 H 0.185 0.815 35 H 0.236 0.764 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.370 3.594 -3.403 18.062 hybrid contribution -0.426 0.517 0.375 0.768 sum -17.796 4.111 -3.028 18.515 Atomic orbital electron populations 1.23357 0.77824 1.05283 1.01624 1.86505 1.21514 1.24469 1.84485 1.19423 0.91163 0.85407 0.85982 1.21224 1.01316 0.90393 1.11076 1.20879 0.91438 0.99533 0.89683 1.20788 0.93290 0.82996 1.20692 1.43448 1.01138 1.02605 0.97331 1.94594 0.95595 1.93719 1.53268 1.94508 1.64791 1.24977 1.54205 1.21147 1.02181 0.88671 0.88216 1.19682 0.91215 0.94229 1.11360 1.17991 0.83221 0.87693 0.78040 1.90820 1.71698 1.27696 1.48771 1.47530 1.04367 1.11393 1.72684 1.20057 0.95123 0.87325 0.87356 0.89019 1.20733 0.93569 1.47142 0.96058 0.88602 1.24998 0.95523 0.93126 0.97312 1.69851 1.23137 1.41923 1.13648 0.86974 0.82919 0.81189 0.79924 1.18872 1.20415 1.17851 1.21671 0.72871 0.75432 0.91805 1.93077 1.86478 1.59887 1.77859 1.93114 1.70895 1.55152 1.96994 1.93146 1.43346 1.91852 1.89371 0.87181 0.91972 0.91954 0.82581 0.82395 0.81528 0.76361 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 101.05 0.99 1.09 16 2 O -0.26 -3.44 8.57 -40.55 -0.35 -3.79 16 3 C 0.23 2.93 6.70 -38.69 -0.26 2.67 16 4 C -0.22 -1.96 9.03 -39.47 -0.36 -2.31 16 5 C 0.00 0.04 9.54 -39.53 -0.38 -0.34 16 6 C -0.09 -1.17 6.84 -79.99 -0.55 -1.72 16 7 N 0.04 0.52 4.45 33.94 0.15 0.67 16 8 O -0.15 -2.43 18.43 -29.46 -0.54 -2.97 16 9 O -0.17 -2.43 18.43 -29.46 -0.54 -2.97 16 10 C 0.02 0.24 9.04 -39.20 -0.35 -0.12 16 11 C -0.16 -2.41 5.89 -104.85 -0.62 -3.02 16 12 C 0.55 10.41 7.42 -12.47 -0.09 10.32 16 13 O -0.51 -11.19 13.73 -16.59 -0.23 -11.42 16 14 N -0.71 -13.92 4.86 -55.97 -0.27 -14.19 16 15 C 0.20 4.59 1.71 -69.08 -0.12 4.47 16 16 H 0.09 2.18 4.73 -51.92 -0.25 1.93 16 17 C -0.54 -13.39 8.52 -34.44 -0.29 -13.68 16 18 H 0.10 2.58 8.00 -52.49 -0.42 2.16 16 19 C 0.10 2.59 5.47 -17.82 -0.10 2.49 16 20 N -0.85 -23.01 13.96 55.43 0.77 -22.24 16 21 Si 0.87 19.67 26.99 -169.99 -4.59 15.08 16 22 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.25 -5.83 6.82 56.52 0.39 -5.45 16 25 C 0.44 9.57 2.83 37.16 0.11 9.68 16 26 F -0.19 -4.04 16.93 2.25 0.04 -4.00 16 27 F -0.18 -4.02 16.89 2.25 0.04 -3.98 16 28 F -0.20 -4.23 15.83 2.25 0.04 -4.19 16 29 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.32 7.67 -51.93 -0.40 -0.07 16 31 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 32 H 0.16 0.81 6.30 -52.49 -0.33 0.48 16 33 H 0.16 1.12 7.59 -52.49 -0.40 0.72 16 34 H 0.17 2.17 5.94 -52.48 -0.31 1.86 16 35 H 0.40 7.04 6.62 -40.82 -0.27 6.77 16 36 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 333.86 15.07 5.03 5.03 Total: -1.00 -30.83 333.86 -4.81 -35.64 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -2.35 Total: 3.81 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: -2.02 Total: 9.52 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.65 Total: -35.76 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -1.66 Total: -21.15 kcal Atomic # 9 Polarization: -12.28 SS G_CDS: 0.11 Total: -12.17 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.59 Total: 15.08 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.83 -4.81 -35.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462889728.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.131 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds