Wall clock time and date at job start Wed Apr 1 2020 04:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35656 * 116.99983 * 2 1 4 4 C 1.38711 * 120.14873 * 359.72621 * 3 2 1 5 5 C 1.38058 * 120.07974 * 179.78810 * 4 3 2 6 6 C 1.38544 * 120.38817 * 0.46739 * 5 4 3 7 7 N 1.48025 * 119.84744 * 179.76945 * 6 5 4 8 8 O 1.21792 * 120.00425 * 180.02562 * 7 6 5 9 9 O 1.21804 * 119.99827 * 0.02562 * 7 6 5 10 10 C 1.37786 * 120.30439 * 359.78347 * 6 5 4 11 11 C 1.39703 * 119.90816 * 359.97438 * 10 6 5 12 12 C 1.47535 * 120.19276 * 179.97438 * 11 10 6 13 13 O 1.21586 * 119.99778 * 180.02562 * 12 11 10 14 14 N 1.34773 * 119.99741 * 0.02562 * 12 11 10 15 15 C 1.46506 * 119.99971 * 179.97438 * 14 12 11 16 16 H 1.09007 * 109.46995 * 325.00374 * 15 14 12 17 17 C 1.50699 * 109.47387 * 205.00152 * 15 14 12 18 18 H 1.07998 * 119.99851 * 274.94183 * 17 15 14 19 19 C 1.37875 * 119.99949 * 94.93859 * 17 15 14 20 20 N 1.31518 * 119.99989 * 184.87674 * 19 17 15 21 21 Si 1.86796 * 119.99927 * 4.88278 * 19 17 15 22 22 H 1.48503 * 109.47224 * 84.80996 * 21 19 17 23 23 H 1.48506 * 109.46846 * 204.80413 * 21 19 17 24 24 H 1.48493 * 109.47563 * 324.80544 * 21 19 17 25 25 C 1.53004 * 109.46867 * 84.99969 * 15 14 12 26 26 F 1.39902 * 109.47165 * 54.94237 * 25 15 14 27 27 F 1.39900 * 109.46672 * 174.94099 * 25 15 14 28 28 F 1.39901 * 109.47126 * 294.93632 * 25 15 14 29 29 H 1.09002 * 109.46969 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47285 * 299.99855 * 1 2 3 31 31 H 1.08997 * 109.47076 * 59.99477 * 1 2 3 32 32 H 1.08002 * 119.95656 * 0.02562 * 4 3 2 33 33 H 1.07995 * 119.80251 * 180.21367 * 5 4 3 34 34 H 1.08006 * 120.04470 * 179.97438 * 10 6 5 35 35 H 0.96996 * 120.00447 * 0.02562 * 14 12 11 36 36 H 0.97000 * 120.00009 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2924 2.3740 -0.0057 5 6 1.9207 3.6033 -0.0013 6 6 3.3038 3.6836 -0.0009 7 7 3.9649 5.0080 -0.0013 8 8 5.1806 5.0819 -0.0014 9 8 3.2931 6.0240 -0.0015 10 6 4.0668 2.5363 -0.0004 11 6 3.4441 1.2857 0.0002 12 6 4.2550 0.0531 0.0002 13 8 3.7094 -1.0335 0.0003 14 7 5.6004 0.1317 0.0001 15 6 6.4057 -1.0922 0.0006 16 1 5.9021 -1.8582 0.5905 17 6 7.7576 -0.8039 0.6009 18 1 8.5495 -0.4076 -0.0173 19 6 7.9833 -1.0458 1.9393 20 7 9.1307 -0.7055 2.4847 21 14 6.6597 -1.8573 2.9780 22 1 6.7550 -3.3325 2.8372 23 1 6.8494 -1.4828 4.4025 24 1 5.3226 -1.4017 2.5203 25 6 6.5809 -1.5880 -1.4362 26 9 7.1218 -0.5634 -2.2204 27 9 7.4438 -2.6891 -1.4475 28 9 5.3372 -1.9649 -1.9544 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 0.2138 2.3194 -0.0098 33 1 1.3304 4.5077 -0.0023 34 1 5.1447 2.6037 -0.0005 35 1 6.0357 0.9985 0.0004 36 1 9.2897 -0.8761 3.4263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462889728.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:57 Heat of formation + Delta-G solvation = -218.942373 kcal Electronic energy + Delta-G solvation = -31600.727376 eV Core-core repulsion = 26445.311857 eV Total energy + Delta-G solvation = -5155.415520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.081 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.91443 -48.42344 -48.40131 -43.27884 -41.90739 -40.25647 -38.77155 -37.66445 -36.66645 -34.62678 -33.25036 -32.38402 -30.79210 -28.71118 -26.97771 -26.94317 -25.61052 -23.61271 -22.98645 -21.89105 -20.81741 -19.79890 -19.76511 -19.45470 -19.35983 -18.68274 -18.60931 -18.50944 -17.85244 -17.60414 -17.03280 -16.80196 -16.22869 -15.85271 -15.60714 -15.30330 -15.26217 -15.05076 -14.88036 -14.83582 -14.60469 -14.55042 -14.53080 -14.35635 -14.03793 -13.74367 -13.38643 -13.06913 -12.71797 -12.63038 -12.48860 -12.40755 -12.30670 -12.28023 -12.03727 -11.88775 -11.21761 -10.98026 -10.70822 -10.26227 -9.93644 -8.58546 -6.77874 -1.24642 -0.63928 0.19312 0.31794 1.22352 1.28722 1.37519 1.48776 1.82374 1.94248 2.04194 2.13000 2.33831 2.85499 3.06525 3.20373 3.27811 3.31030 3.38925 3.51073 3.65173 3.94819 4.09742 4.21043 4.24058 4.36131 4.37315 4.49401 4.63507 4.76082 4.88297 4.90688 5.25723 5.30026 5.82899 6.01602 6.40299 6.49059 6.52458 6.95419 7.08926 8.53713 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.009872 B = 0.004501 C = 0.003990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.684460 B = 6218.852596 C = 7014.997828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.296 6.296 3 C 0.233 3.767 4 C -0.195 4.195 5 C 0.025 3.975 6 C -0.105 4.105 7 N 0.039 4.961 8 O -0.213 6.213 9 O -0.145 6.145 10 C 0.019 3.981 11 C -0.190 4.190 12 C 0.545 3.455 13 O -0.544 6.544 14 N -0.710 5.710 15 C 0.212 3.788 16 H 0.083 0.917 17 C -0.539 4.539 18 H 0.067 0.933 19 C 0.064 3.936 20 N -0.894 5.894 21 Si 0.917 3.083 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.259 1.259 25 C 0.440 3.560 26 F -0.187 7.187 27 F -0.183 7.183 28 F -0.192 7.192 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.206 0.794 33 H 0.194 0.806 34 H 0.158 0.842 35 H 0.408 0.592 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.916 6.277 -3.468 22.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 O -0.205 6.205 3 C 0.181 3.819 4 C -0.214 4.214 5 C 0.006 3.994 6 C -0.189 4.189 7 N 0.553 4.447 8 O -0.417 6.417 9 O -0.368 6.368 10 C -0.001 4.001 11 C -0.195 4.195 12 C 0.333 3.667 13 O -0.423 6.423 14 N -0.363 5.363 15 C 0.107 3.893 16 H 0.100 0.900 17 C -0.577 4.577 18 H 0.085 0.915 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.740 3.260 22 H -0.184 1.184 23 H -0.194 1.194 24 H -0.183 1.183 25 C 0.384 3.616 26 F -0.169 7.169 27 F -0.165 7.165 28 F -0.173 7.173 29 H 0.133 0.867 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.223 0.777 33 H 0.211 0.789 34 H 0.175 0.825 35 H 0.246 0.754 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.306 4.600 -3.328 22.049 hybrid contribution 0.592 0.240 0.253 0.688 sum -20.713 4.840 -3.075 21.492 Atomic orbital electron populations 1.23772 0.74770 1.06654 1.04124 1.86464 1.24800 1.25178 1.84064 1.19598 0.90357 0.86774 0.85144 1.21651 1.03185 0.88214 1.08302 1.21358 0.89949 1.01241 0.86874 1.20889 0.94402 0.81475 1.22140 1.43672 1.00962 1.03208 0.96813 1.94619 0.96441 1.94109 1.56485 1.94465 1.64448 1.25645 1.52209 1.20995 1.02030 0.88897 0.88214 1.19264 0.92285 0.92455 1.15457 1.18441 0.82669 0.88935 0.76643 1.90788 1.72056 1.29288 1.50166 1.47100 1.05097 1.10722 1.73388 1.19763 0.94065 0.88002 0.87434 0.89974 1.20658 0.94116 1.46985 0.95892 0.91452 1.25560 0.96992 0.93513 0.98248 1.69924 1.24792 1.43773 1.14280 0.86166 0.80366 0.80471 0.78966 1.18405 1.19444 1.18341 1.21559 0.72933 0.75391 0.91715 1.93082 1.86431 1.59712 1.77677 1.93104 1.71040 1.55329 1.97012 1.93151 1.43085 1.91812 1.89271 0.86722 0.89404 0.89292 0.77728 0.78852 0.82475 0.75390 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.81 113.37 1.11 1.11 16 2 O -0.30 -7.04 8.57 -68.79 -0.59 -7.63 16 3 C 0.23 5.22 6.70 22.84 0.15 5.37 16 4 C -0.19 -2.43 9.03 22.34 0.20 -2.22 16 5 C 0.02 0.35 9.54 22.30 0.21 0.56 16 6 C -0.10 -2.39 6.84 36.34 0.25 -2.14 16 7 N 0.04 1.06 4.45 -46.54 -0.21 0.85 16 8 O -0.21 -6.86 18.43 18.90 0.35 -6.51 16 9 O -0.14 -3.70 18.43 18.88 0.35 -3.35 16 10 C 0.02 0.49 9.04 22.52 0.20 0.70 16 11 C -0.19 -5.54 5.89 -20.01 -0.12 -5.66 16 12 C 0.55 20.91 7.42 86.70 0.64 21.55 16 13 O -0.54 -23.79 13.73 16.93 0.23 -23.55 16 14 N -0.71 -28.60 4.86 -449.26 -2.18 -30.78 16 15 C 0.21 9.73 1.71 44.25 0.08 9.80 16 16 H 0.08 3.95 4.73 -2.38 -0.01 3.94 16 17 C -0.54 -27.75 8.52 25.60 0.22 -27.53 16 18 H 0.07 3.80 8.00 -2.91 -0.02 3.78 16 19 C 0.06 3.35 5.47 84.65 0.46 3.81 16 20 N -0.89 -49.47 13.96 21.45 0.30 -49.17 16 21 Si 0.92 41.07 26.99 68.60 1.85 42.93 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.26 -11.71 6.82 99.48 0.68 -11.03 16 25 C 0.44 19.51 2.83 71.98 0.20 19.72 16 26 F -0.19 -8.06 16.93 44.97 0.76 -7.30 16 27 F -0.18 -8.29 16.89 44.97 0.76 -7.53 16 28 F -0.19 -8.31 15.83 44.97 0.71 -7.59 16 29 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 0.45 7.67 -2.39 -0.02 0.43 16 31 H 0.09 0.44 7.65 -2.39 -0.02 0.42 16 32 H 0.21 0.57 6.30 -2.91 -0.02 0.55 16 33 H 0.19 1.47 7.59 -2.91 -0.02 1.44 16 34 H 0.16 4.31 5.94 -2.91 -0.02 4.29 16 35 H 0.41 15.02 6.62 -92.71 -0.61 14.40 16 36 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -69.68 333.86 6.51 -63.17 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.56 Total: 11.40 kcal Atomic # 6 Polarization: 21.46 SS G_CDS: 3.62 Total: 25.08 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -2.09 Total: -79.11 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: 0.34 Total: -41.04 kcal Atomic # 9 Polarization: -24.65 SS G_CDS: 2.23 Total: -22.42 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.85 Total: 42.93 kcal Total: -69.68 6.51 -63.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462889728.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.775 kcal (2) G-P(sol) polarization free energy of solvation -69.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds