Wall clock time and date at job start Wed Apr 1 2020 05:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00045 * 2 1 4 4 H 1.48504 * 109.47388 * 269.99576 * 3 2 1 5 5 H 1.48499 * 109.47228 * 29.99816 * 3 2 1 6 6 H 1.48505 * 109.47352 * 149.99939 * 3 2 1 7 7 C 1.37884 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99731 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00096 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47223 * 180.02562 * 9 7 2 11 11 O 1.42895 * 109.47384 * 179.97438 * 10 9 7 12 12 C 1.35970 * 117.00198 * 179.97438 * 11 10 9 13 13 C 1.38800 * 120.49940 * 0.02562 * 12 11 10 14 14 C 1.38777 * 118.44920 * 179.97438 * 13 12 11 15 15 C 1.38097 * 119.35956 * 0.25137 * 14 13 12 16 16 N 1.31946 * 120.95602 * 359.47544 * 15 14 13 17 17 C 1.32291 * 121.69206 * 0.53599 * 16 15 14 18 18 N 1.39464 * 119.73114 * 179.70930 * 17 16 15 19 19 C 1.34776 * 119.99835 * 0.02562 * 18 17 16 20 20 O 1.21486 * 120.00451 * 359.97438 * 19 18 17 21 21 C 1.48429 * 119.99536 * 179.97438 * 19 18 17 22 22 N 1.32497 * 119.17295 * 359.73404 * 21 19 18 23 23 C 1.32073 * 120.77975 * 179.71883 * 22 21 19 24 24 C 1.38958 * 119.14860 * 0.53835 * 23 22 21 25 25 Cl 1.73594 * 120.76050 * 179.71358 * 24 23 22 26 26 C 1.38956 * 118.47924 * 359.73519 * 24 23 22 27 27 N 1.32072 * 119.14888 * 359.97438 * 26 24 23 28 28 H 0.97004 * 119.99851 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47113 * 59.99748 * 9 7 2 30 30 H 1.08997 * 109.46835 * 300.00174 * 9 7 2 31 31 H 1.08997 * 109.47356 * 59.99806 * 10 9 7 32 32 H 1.08998 * 109.46852 * 300.00126 * 10 9 7 33 33 H 1.07999 * 120.77487 * 359.95111 * 13 12 11 34 34 H 1.08002 * 120.31611 * 179.97438 * 14 13 12 35 35 H 1.07994 * 119.51992 * 179.74694 * 15 14 13 36 36 H 0.96998 * 119.99782 * 180.02562 * 18 17 16 37 37 H 1.08000 * 120.42079 * 180.27306 * 23 22 21 38 38 H 1.07998 * 120.42266 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 8 1.5306 -4.8997 0.0024 12 6 2.2711 -6.0400 0.0030 13 6 3.6578 -5.9795 0.0036 14 6 4.3715 -7.1697 0.0048 15 6 3.6875 -8.3694 0.0001 16 7 2.3683 -8.3985 0.0048 17 6 1.6486 -7.2885 0.0037 18 7 0.2562 -7.3670 0.0028 19 6 -0.3509 -8.5703 0.0035 20 8 0.3148 -9.5865 0.0045 21 6 -1.8328 -8.6537 0.0031 22 7 -2.5427 -7.5350 0.0073 23 6 -3.8629 -7.5722 0.0015 24 6 -4.5052 -8.8044 0.0022 25 17 -6.2384 -8.9021 0.0022 26 6 -3.7285 -9.9566 0.0034 27 7 -2.4124 -9.8452 0.0033 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 2.8711 -3.6041 0.8922 32 1 2.8724 -3.6048 -0.8877 33 1 4.1694 -5.0284 0.0028 34 1 5.4515 -7.1578 0.0048 35 1 4.2403 -9.2971 -0.0032 36 1 -0.2752 -6.5556 0.0016 37 1 -4.4358 -6.6567 0.0006 38 1 -4.1949 -10.9306 0.0043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464712475.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:24 Heat of formation + Delta-G solvation = 25.691045 kcal Electronic energy + Delta-G solvation = -26342.410534 eV Core-core repulsion = 22212.461772 eV Total energy + Delta-G solvation = -4129.948763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.79004 -40.80592 -39.10011 -37.79268 -37.32904 -35.18062 -34.26964 -33.47274 -32.51726 -31.62423 -30.57711 -29.17005 -26.10279 -25.41587 -25.28470 -23.60634 -22.84217 -21.45870 -20.64526 -19.03385 -18.55428 -17.94530 -17.32610 -17.06866 -16.29477 -16.17346 -16.12204 -15.64993 -15.42170 -14.91223 -14.70811 -14.57747 -14.27432 -14.21429 -13.92675 -13.52692 -12.88908 -12.70071 -12.40826 -12.12410 -12.05205 -12.01554 -11.93905 -11.53825 -11.07337 -10.99663 -10.82721 -10.68466 -10.57404 -10.05465 -9.85623 -9.84061 -9.78365 -9.42158 -9.26904 -9.18150 -8.51742 -7.72122 -6.17382 -4.22281 -0.23970 0.43621 1.15747 1.28489 1.40942 2.35469 2.37714 3.22716 3.28742 3.30930 3.34343 3.36402 3.50199 3.68836 3.77328 3.97138 4.16932 4.33877 4.38035 4.67299 4.91694 5.02369 5.07774 5.19493 5.20845 5.42887 5.50803 5.83858 5.89772 6.00914 6.13949 6.18633 6.26531 6.52941 6.55689 7.03576 7.30113 7.36626 7.53971 7.62097 7.82163 7.92634 8.14795 8.21082 8.82924 9.42523 10.93959 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.008251 B = 0.002734 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3392.709742 B =10240.373633 C =13612.636280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.065 3.935 11 O -0.313 6.313 12 C 0.075 3.925 13 C -0.148 4.148 14 C -0.155 4.155 15 C 0.076 3.924 16 N -0.445 5.445 17 C 0.325 3.675 18 N -0.629 5.629 19 C 0.575 3.425 20 O -0.438 6.438 21 C 0.292 3.708 22 N -0.474 5.474 23 C 0.169 3.831 24 C -0.134 4.134 25 Cl -0.026 7.026 26 C 0.164 3.836 27 N -0.452 5.452 28 H 0.264 0.736 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.147 0.853 34 H 0.136 0.864 35 H 0.159 0.841 36 H 0.435 0.565 37 H 0.190 0.810 38 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.166 -18.338 -0.015 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.008 4.008 11 O -0.226 6.226 12 C 0.023 3.977 13 C -0.174 4.174 14 C -0.176 4.176 15 C -0.081 4.081 16 N -0.160 5.160 17 C 0.092 3.908 18 N -0.278 5.278 19 C 0.355 3.645 20 O -0.302 6.302 21 C 0.022 3.978 22 N -0.191 5.191 23 C 0.001 3.999 24 C -0.166 4.166 25 Cl 0.003 6.997 26 C -0.004 4.004 27 N -0.167 5.167 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.165 0.835 34 H 0.154 0.846 35 H 0.176 0.824 36 H 0.275 0.725 37 H 0.207 0.793 38 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -5.660 -19.718 0.001 20.514 hybrid contribution -0.411 2.270 -0.011 2.307 sum -6.071 -17.447 -0.010 18.473 Atomic orbital electron populations 1.69966 1.06084 1.27045 1.49487 1.24976 0.94911 0.99380 0.94818 0.86493 0.79754 0.82923 0.78254 1.20476 1.21027 1.19759 1.20943 0.93047 0.90130 1.52527 0.92351 1.19126 0.94122 0.88831 0.98983 1.23419 0.97287 0.80253 0.99882 1.86130 1.36200 1.12897 1.87343 1.19556 0.91130 0.87022 0.99957 1.21629 0.92103 1.00480 1.03232 1.21927 1.01299 0.92475 1.01888 1.22409 0.88583 0.98015 0.99087 1.67577 1.08150 1.26868 1.13408 1.17660 0.84062 0.87234 1.01806 1.43057 1.04085 1.10030 1.70660 1.17174 0.83870 0.84159 0.79271 1.90921 1.62978 1.33917 1.42417 1.22985 0.96113 0.84521 0.94184 1.68527 1.07494 1.31378 1.11696 1.23467 0.89663 0.97319 0.89414 1.23224 0.88624 0.97984 1.06784 1.98423 1.06364 1.98505 1.96453 1.23463 0.88011 0.98721 0.90203 1.68369 1.10780 1.26901 1.10618 0.92658 0.95284 0.95280 0.92863 0.92862 0.83530 0.84604 0.82400 0.72458 0.79331 0.79620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 13.29 55.43 0.74 -24.65 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.53 -14.01 9.11 -34.44 -0.31 -14.33 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 10 C 0.07 1.28 4.70 37.15 0.17 1.45 16 11 O -0.31 -5.77 9.38 -19.65 -0.18 -5.96 16 12 C 0.08 1.24 6.72 -38.90 -0.26 0.98 16 13 C -0.15 -2.09 9.14 -39.17 -0.36 -2.45 16 14 C -0.15 -1.85 10.10 -39.43 -0.40 -2.25 16 15 C 0.08 1.00 11.17 -17.55 -0.20 0.80 16 16 N -0.44 -7.38 7.87 -12.24 -0.10 -7.48 16 17 C 0.32 5.44 7.44 -154.52 -1.15 4.29 16 18 N -0.63 -9.91 5.37 -11.99 -0.06 -9.97 16 19 C 0.58 9.17 7.81 -12.06 -0.09 9.08 16 20 O -0.44 -8.08 15.11 5.38 0.08 -8.00 16 21 C 0.29 3.95 7.59 -157.06 -1.19 2.76 16 22 N -0.47 -5.68 9.57 -11.11 -0.11 -5.78 16 23 C 0.17 1.49 11.13 -17.18 -0.19 1.30 16 24 C -0.13 -1.05 6.38 -39.05 -0.25 -1.30 16 25 Cl -0.03 -0.17 29.02 -51.86 -1.50 -1.67 16 26 C 0.16 1.40 11.13 -17.18 -0.19 1.21 16 27 N -0.45 -5.63 10.13 -11.11 -0.11 -5.74 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 32 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 33 H 0.15 1.90 6.44 -52.49 -0.34 1.57 16 34 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.44 6.51 7.34 -40.82 -0.30 6.21 16 37 H 0.19 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.19 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 357.58 15.07 5.39 5.39 Total: -1.00 -32.70 357.58 -9.07 -41.76 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -3.52 Total: 2.94 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -4.67 Total: 3.62 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.36 Total: -53.62 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.10 Total: -13.96 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.50 Total: -1.67 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.70 -9.07 -41.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464712475.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.453 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds