Wall clock time and date at job start Wed Apr 1 2020 05:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00045 * 2 1 4 4 H 1.48504 * 109.47388 * 269.99576 * 3 2 1 5 5 H 1.48499 * 109.47228 * 29.99816 * 3 2 1 6 6 H 1.48505 * 109.47352 * 149.99939 * 3 2 1 7 7 C 1.37884 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99731 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00096 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47223 * 180.02562 * 9 7 2 11 11 O 1.42895 * 109.47384 * 179.97438 * 10 9 7 12 12 C 1.35970 * 117.00198 * 179.97438 * 11 10 9 13 13 C 1.38800 * 120.49940 * 0.02562 * 12 11 10 14 14 C 1.38777 * 118.44920 * 179.97438 * 13 12 11 15 15 C 1.38097 * 119.35956 * 0.25137 * 14 13 12 16 16 N 1.31946 * 120.95602 * 359.47544 * 15 14 13 17 17 C 1.32291 * 121.69206 * 0.53599 * 16 15 14 18 18 N 1.39464 * 119.73114 * 179.70930 * 17 16 15 19 19 C 1.34776 * 119.99835 * 0.02562 * 18 17 16 20 20 O 1.21486 * 120.00451 * 359.97438 * 19 18 17 21 21 C 1.48429 * 119.99536 * 179.97438 * 19 18 17 22 22 N 1.32497 * 119.17295 * 359.73404 * 21 19 18 23 23 C 1.32073 * 120.77975 * 179.71883 * 22 21 19 24 24 C 1.38958 * 119.14860 * 0.53835 * 23 22 21 25 25 Cl 1.73594 * 120.76050 * 179.71358 * 24 23 22 26 26 C 1.38956 * 118.47924 * 359.73519 * 24 23 22 27 27 N 1.32072 * 119.14888 * 359.97438 * 26 24 23 28 28 H 0.97004 * 119.99851 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47113 * 59.99748 * 9 7 2 30 30 H 1.08997 * 109.46835 * 300.00174 * 9 7 2 31 31 H 1.08997 * 109.47356 * 59.99806 * 10 9 7 32 32 H 1.08998 * 109.46852 * 300.00126 * 10 9 7 33 33 H 1.07999 * 120.77487 * 359.95111 * 13 12 11 34 34 H 1.08002 * 120.31611 * 179.97438 * 14 13 12 35 35 H 1.07994 * 119.51992 * 179.74694 * 15 14 13 36 36 H 0.96998 * 119.99782 * 180.02562 * 18 17 16 37 37 H 1.08000 * 120.42079 * 180.27306 * 23 22 21 38 38 H 1.07998 * 120.42266 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 8 1.5306 -4.8997 0.0024 12 6 2.2711 -6.0400 0.0030 13 6 3.6578 -5.9795 0.0036 14 6 4.3715 -7.1697 0.0048 15 6 3.6875 -8.3694 0.0001 16 7 2.3683 -8.3985 0.0048 17 6 1.6486 -7.2885 0.0037 18 7 0.2562 -7.3670 0.0028 19 6 -0.3509 -8.5703 0.0035 20 8 0.3148 -9.5865 0.0045 21 6 -1.8328 -8.6537 0.0031 22 7 -2.5427 -7.5350 0.0073 23 6 -3.8629 -7.5722 0.0015 24 6 -4.5052 -8.8044 0.0022 25 17 -6.2384 -8.9021 0.0022 26 6 -3.7285 -9.9566 0.0034 27 7 -2.4124 -9.8452 0.0033 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 2.8711 -3.6041 0.8922 32 1 2.8724 -3.6048 -0.8877 33 1 4.1694 -5.0284 0.0028 34 1 5.4515 -7.1578 0.0048 35 1 4.2403 -9.2971 -0.0032 36 1 -0.2752 -6.5556 0.0016 37 1 -4.4358 -6.6567 0.0006 38 1 -4.1949 -10.9306 0.0043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464712475.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:23 Heat of formation + Delta-G solvation = 4.703463 kcal Electronic energy + Delta-G solvation = -26343.320624 eV Core-core repulsion = 22212.461772 eV Total energy + Delta-G solvation = -4130.858852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.69287 -41.92775 -40.30207 -39.09233 -37.97473 -36.31194 -35.45666 -35.14382 -33.37226 -32.87401 -32.19111 -30.45130 -27.18425 -27.03116 -26.05992 -24.91906 -24.00159 -22.91119 -21.97494 -20.15579 -19.50528 -19.20704 -18.45919 -17.99271 -17.91899 -17.33783 -17.31718 -16.89814 -16.56827 -16.34491 -15.92669 -15.83340 -15.28207 -15.15108 -14.94327 -14.77752 -14.34369 -14.16199 -13.64813 -13.38542 -13.31337 -12.95765 -12.80176 -12.73734 -12.61126 -12.43183 -12.39248 -11.99408 -11.75731 -11.71570 -11.59651 -11.39431 -10.65103 -10.59559 -10.57839 -10.43513 -10.34554 -8.92401 -8.23636 -6.36099 -1.10433 -0.29437 0.06341 0.27387 0.61187 1.31250 1.35029 1.43741 1.44709 1.55525 2.10308 2.41164 2.45348 2.46817 2.82890 2.85008 3.09872 3.11584 3.44910 3.47624 3.62918 3.84490 3.95263 4.11174 4.31511 4.34057 4.41677 4.46133 4.76576 4.77939 4.93480 5.06732 5.17106 5.33099 5.41336 5.51039 5.52668 5.74090 5.92846 6.09398 6.28408 6.46135 6.73629 6.78857 7.08367 7.33753 8.88973 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.008251 B = 0.002734 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3392.709742 B =10240.373633 C =13612.636280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.544 4.544 8 H 0.072 0.928 9 C 0.030 3.970 10 C 0.083 3.917 11 O -0.329 6.329 12 C 0.050 3.950 13 C -0.147 4.147 14 C -0.136 4.136 15 C 0.076 3.924 16 N -0.474 5.474 17 C 0.303 3.697 18 N -0.629 5.629 19 C 0.574 3.426 20 O -0.474 6.474 21 C 0.272 3.728 22 N -0.491 5.491 23 C 0.162 3.838 24 C -0.116 4.116 25 Cl -0.002 7.002 26 C 0.164 3.836 27 N -0.475 5.475 28 H 0.266 0.734 29 H 0.001 0.999 30 H 0.001 0.999 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.161 0.839 34 H 0.180 0.820 35 H 0.191 0.809 36 H 0.434 0.566 37 H 0.216 0.784 38 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.044 -18.562 -0.016 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.581 4.581 8 H 0.090 0.910 9 C -0.008 4.008 10 C 0.008 3.992 11 O -0.243 6.243 12 C -0.001 4.001 13 C -0.173 4.173 14 C -0.157 4.157 15 C -0.081 4.081 16 N -0.189 5.189 17 C 0.072 3.928 18 N -0.278 5.278 19 C 0.356 3.644 20 O -0.341 6.341 21 C 0.003 3.997 22 N -0.208 5.208 23 C -0.004 4.004 24 C -0.148 4.148 25 Cl 0.027 6.973 26 C -0.002 4.002 27 N -0.191 5.191 28 H 0.074 0.926 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.179 0.821 34 H 0.198 0.802 35 H 0.208 0.792 36 H 0.274 0.726 37 H 0.232 0.768 38 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -4.549 -19.946 0.001 20.458 hybrid contribution -0.853 2.210 -0.012 2.369 sum -5.402 -17.735 -0.011 18.540 Atomic orbital electron populations 1.70106 1.07895 1.28067 1.50694 1.25958 0.95759 1.03415 0.94361 0.85369 0.78680 0.78010 0.78527 1.19761 1.20967 1.18339 1.21399 0.93883 0.90989 1.51879 0.91014 1.18943 0.94533 0.91028 0.96257 1.22990 0.95628 0.79460 1.01079 1.86056 1.36757 1.13129 1.88345 1.19710 0.92243 0.85970 1.02198 1.21942 0.91085 1.02112 1.02183 1.22348 1.03271 0.90878 0.99171 1.23107 0.87733 1.00049 0.97256 1.67630 1.09881 1.27042 1.14376 1.17853 0.84459 0.87552 1.02888 1.43117 1.04193 1.10077 1.70462 1.17538 0.85030 0.83627 0.78208 1.90867 1.64176 1.34701 1.44334 1.22464 0.95021 0.85512 0.96750 1.68475 1.09007 1.31018 1.12315 1.23947 0.88775 0.98916 0.88800 1.23225 0.89676 0.97371 1.04536 1.98442 1.04344 1.98438 1.96112 1.24036 0.86786 1.00438 0.88970 1.68327 1.12728 1.26584 1.11442 0.92563 0.98079 0.98078 0.91569 0.91539 0.82143 0.80227 0.79241 0.72553 0.76796 0.76212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.32 13.29 21.45 0.28 -54.03 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.97 41.89 29.54 68.60 2.03 43.92 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.54 -28.97 9.11 25.60 0.23 -28.74 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.03 1.50 5.34 29.85 0.16 1.66 16 10 C 0.08 3.23 4.70 71.98 0.34 3.57 16 11 O -0.33 -12.54 9.38 -93.21 -0.87 -13.41 16 12 C 0.05 1.65 6.72 22.71 0.15 1.80 16 13 C -0.15 -3.88 9.14 22.53 0.21 -3.68 16 14 C -0.14 -2.84 10.10 22.37 0.23 -2.61 16 15 C 0.08 1.85 11.17 84.64 0.95 2.79 16 16 N -0.47 -15.79 7.87 -192.64 -1.52 -17.31 16 17 C 0.30 10.48 7.44 133.03 0.99 11.47 16 18 N -0.63 -21.19 5.37 -310.15 -1.67 -22.85 16 19 C 0.57 19.50 7.81 86.96 0.68 20.18 16 20 O -0.47 -18.42 15.11 -3.67 -0.06 -18.48 16 21 C 0.27 7.74 7.59 137.63 1.04 8.78 16 22 N -0.49 -12.24 9.57 -189.05 -1.81 -14.05 16 23 C 0.16 2.80 11.13 84.83 0.94 3.75 16 24 C -0.12 -1.67 6.38 22.61 0.14 -1.52 16 25 Cl 0.00 -0.02 29.02 -2.72 -0.08 -0.10 16 26 C 0.16 2.64 11.13 84.83 0.94 3.59 16 27 N -0.48 -12.06 10.13 -189.05 -1.91 -13.97 16 28 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.07 2.39 7.70 -2.39 -0.02 2.37 16 32 H 0.07 2.40 7.70 -2.39 -0.02 2.38 16 33 H 0.16 3.75 6.44 -2.91 -0.02 3.73 16 34 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.19 3.26 8.06 -2.91 -0.02 3.23 16 36 H 0.43 14.17 7.34 -92.71 -0.68 13.49 16 37 H 0.22 2.38 8.06 -2.91 -0.02 2.35 16 38 H 0.22 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -74.02 357.58 2.32 -71.69 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.46 Total: 16.87 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: 7.47 Total: 21.72 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -6.62 Total: -122.21 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.93 Total: -31.89 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -0.08 Total: -0.10 kcal Total: -74.02 2.32 -71.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464712475.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.398 kcal (2) G-P(sol) polarization free energy of solvation -74.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds