Wall clock time and date at job start Wed Apr 1 2020 05:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00416 * 2 1 4 4 C 1.52997 * 109.47134 * 270.00164 * 3 2 1 5 5 H 1.08998 * 109.47445 * 59.99340 * 4 3 2 6 6 O 1.42911 * 109.46763 * 299.99643 * 4 3 2 7 7 C 1.52995 * 109.47322 * 179.97438 * 4 3 2 8 8 N 1.46501 * 109.47394 * 184.99790 * 7 4 3 9 9 C 1.36929 * 120.00539 * 179.97438 * 8 7 4 10 10 H 1.08005 * 119.99825 * 359.97438 * 9 8 7 11 11 C 1.38818 * 120.00452 * 180.02562 * 9 8 7 12 12 N 1.31612 * 119.99599 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00104 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46968 * 59.99784 * 13 11 9 15 15 H 1.48493 * 109.47089 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47171 * 300.00016 * 13 11 9 17 17 C 1.34774 * 120.00189 * 179.97438 * 2 1 3 18 18 O 1.21584 * 120.00345 * 184.62454 * 17 2 1 19 19 C 1.47638 * 119.99805 * 4.62368 * 17 2 1 20 20 C 1.39709 * 120.14488 * 310.77822 * 19 17 2 21 21 C 1.37985 * 119.86644 * 180.02562 * 20 19 17 22 22 F 1.35101 * 119.92376 * 180.02562 * 21 20 19 23 23 C 1.38803 * 120.15359 * 0.02562 * 21 20 19 24 24 Cl 1.73603 * 119.85143 * 179.97438 * 23 21 20 25 25 C 1.38315 * 120.29409 * 359.97438 * 23 21 20 26 26 C 1.38263 * 120.13210 * 0.02562 * 25 23 21 27 27 F 1.35098 * 120.07826 * 179.97438 * 26 25 23 28 28 H 1.09000 * 109.47233 * 272.92286 * 1 2 3 29 29 H 1.09002 * 109.46755 * 32.92220 * 1 2 3 30 30 H 1.09002 * 109.46873 * 152.92055 * 1 2 3 31 31 H 1.09010 * 109.46798 * 29.99336 * 3 2 1 32 32 H 1.08998 * 109.47494 * 149.99534 * 3 2 1 33 33 H 0.96696 * 113.99598 * 299.99830 * 6 4 3 34 34 H 1.09000 * 109.46897 * 304.99341 * 7 4 3 35 35 H 1.08993 * 109.47814 * 64.99395 * 7 4 3 36 36 H 0.97006 * 119.99748 * 359.97438 * 8 7 4 37 37 H 0.97006 * 119.99877 * 180.02562 * 12 11 9 38 38 H 1.08002 * 120.06349 * 0.03981 * 20 19 17 39 39 H 1.08005 * 119.93434 * 179.73012 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5002 1.8407 -1.9564 6 8 3.2249 0.7143 -2.1161 7 6 3.2171 3.0356 -1.4425 8 7 3.3570 3.5187 -2.8185 9 6 4.0104 4.6959 -3.0678 10 1 4.4223 5.2686 -2.2500 11 6 4.1425 5.1539 -4.3716 12 7 3.6402 4.4562 -5.3682 13 14 5.0333 6.7602 -4.7116 14 1 6.4318 6.6640 -4.2216 15 1 5.0383 7.0238 -6.1729 16 1 4.3384 7.8696 -4.0104 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1689 0.0854 19 6 1.4043 -2.4437 -0.1020 20 6 0.3091 -2.6916 0.7292 21 6 -0.3730 -3.8869 0.6289 22 9 -1.4326 -4.1277 1.4318 23 6 0.0269 -4.8425 -0.2949 24 17 -0.8365 -6.3439 -0.4140 25 6 1.1103 -4.6039 -1.1211 26 6 1.8024 -3.4103 -1.0307 27 9 2.8607 -3.1786 -1.8378 28 1 -0.3634 0.0524 1.0263 29 1 -0.3633 0.8627 -0.5586 30 1 -0.3633 -0.9150 -0.4678 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5139 33 1 4.0873 0.5459 -1.7125 34 1 2.6693 3.7710 -0.8533 35 1 4.2053 2.8851 -1.0081 36 1 2.9868 3.0045 -3.5530 37 1 3.7328 4.7760 -6.2793 38 1 -0.0032 -1.9491 1.4487 39 1 1.4192 -5.3533 -1.8349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507502465.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:26 Heat of formation + Delta-G solvation = -127.663601 kcal Electronic energy + Delta-G solvation = -28063.173138 eV Core-core repulsion = 23475.885233 eV Total energy + Delta-G solvation = -4587.287905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -49.54816 -49.32874 -40.66984 -38.97109 -37.40005 -37.03887 -35.48438 -34.00115 -32.24320 -31.24693 -30.70523 -29.36052 -27.18758 -25.91471 -24.34371 -23.57619 -22.56455 -21.21044 -20.23446 -18.35899 -18.22388 -17.94708 -17.15307 -17.07616 -16.69496 -16.42069 -15.86634 -15.79651 -15.37797 -15.11347 -14.99855 -14.84739 -14.43575 -14.36594 -13.78666 -13.67616 -13.40810 -13.37321 -13.10473 -12.97693 -12.74798 -12.47698 -12.21973 -12.14303 -11.79028 -11.68066 -11.53747 -10.94018 -10.79654 -10.72164 -10.26151 -10.18586 -9.79923 -9.74261 -9.64888 -9.18427 -8.88461 -8.67183 -6.91569 -5.73886 -3.03460 -0.10481 0.24135 1.24044 2.16490 2.49218 2.83582 3.34460 3.44945 3.49040 3.50532 3.52636 3.76847 3.97979 4.27325 4.57378 4.63796 4.73070 4.82732 4.84322 4.95087 5.00247 5.11087 5.18285 5.26671 5.28653 5.40151 5.52681 5.62405 5.68886 5.88597 5.96334 6.17083 6.31473 6.51169 6.71840 7.04531 7.69098 7.84362 8.15743 8.44262 9.55484 10.13223 10.48736 11.48455 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.023581 B = 0.002164 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.095498 B =12936.278559 C =13362.439251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.598 5.598 3 C 0.084 3.916 4 C 0.085 3.915 5 H 0.097 0.903 6 O -0.548 6.548 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.244 4.244 10 H 0.069 0.931 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.909 3.091 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.567 3.433 18 O -0.511 6.511 19 C -0.126 4.126 20 C -0.087 4.087 21 C 0.095 3.905 22 F -0.118 7.118 23 C -0.031 4.031 24 Cl -0.029 7.029 25 C -0.125 4.125 26 C 0.161 3.839 27 F -0.103 7.103 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.374 0.626 34 H 0.025 0.975 35 H 0.022 0.978 36 H 0.388 0.612 37 H 0.256 0.744 38 H 0.163 0.837 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.330 -20.997 15.309 28.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.330 5.330 3 C -0.039 4.039 4 C 0.024 3.976 5 H 0.115 0.885 6 O -0.353 6.353 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.375 4.375 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.353 3.647 18 O -0.386 6.386 19 C -0.131 4.131 20 C -0.106 4.106 21 C 0.074 3.926 22 F -0.097 7.097 23 C -0.059 4.059 24 Cl 0.000 7.000 25 C -0.144 4.144 26 C 0.140 3.860 27 F -0.081 7.081 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.222 0.778 34 H 0.043 0.957 35 H 0.040 0.960 36 H 0.223 0.777 37 H 0.066 0.934 38 H 0.180 0.820 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.192 -20.971 14.966 28.503 hybrid contribution 0.588 0.670 -0.149 0.904 sum -11.604 -20.301 14.817 27.683 Atomic orbital electron populations 1.22089 0.79336 1.04185 1.01960 1.47553 1.07020 1.05726 1.72693 1.22370 0.98461 0.83928 0.99147 1.22503 0.95876 0.88469 0.90725 0.88544 1.86561 1.33076 1.58821 1.56806 1.21225 0.96813 0.92341 0.89832 1.42237 1.68144 1.25237 1.01376 1.19171 1.28366 0.97773 0.92159 0.91311 1.24765 1.01484 0.99043 0.95622 1.69671 1.50253 1.39259 0.98650 0.86252 0.79548 0.83373 0.76890 1.21254 1.21664 1.21281 1.17684 0.86959 0.82796 0.77241 1.90833 1.12857 1.86635 1.48289 1.19973 0.97859 0.96505 0.98753 1.21206 0.93491 0.96160 0.99747 1.17087 0.88509 0.94157 0.92813 1.91589 1.52874 1.94391 1.70804 1.20830 0.96619 0.89928 0.98540 1.98428 1.75087 1.29207 1.97297 1.20889 0.94900 0.97451 1.01163 1.17344 0.85936 0.92704 0.90022 1.91675 1.52323 1.94300 1.69810 0.92015 0.90114 0.90722 0.89091 0.88996 0.77816 0.95748 0.96046 0.77739 0.93437 0.81986 0.81779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 9.09 59.84 0.54 1.04 16 2 N -0.60 -6.59 2.83 -182.77 -0.52 -7.10 16 3 C 0.08 1.01 5.18 -4.04 -0.02 0.99 16 4 C 0.09 1.37 3.27 -26.74 -0.09 1.28 16 5 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 6 O -0.55 -10.16 12.20 -37.52 -0.46 -10.62 16 7 C 0.13 2.49 5.90 -4.04 -0.02 2.47 16 8 N -0.73 -18.77 5.55 -59.91 -0.33 -19.10 16 9 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 10 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 11 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 12 N -0.93 -28.81 13.06 55.49 0.72 -28.08 16 13 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 C 0.57 7.28 6.44 -12.42 -0.08 7.20 16 18 O -0.51 -8.28 15.32 3.00 0.05 -8.23 16 19 C -0.13 -1.30 4.90 -104.91 -0.51 -1.81 16 20 C -0.09 -0.64 7.59 -39.12 -0.30 -0.94 16 21 C 0.09 0.72 7.26 -39.46 -0.29 0.44 16 22 F -0.12 -0.94 16.82 2.25 0.04 -0.90 16 23 C -0.03 -0.24 6.33 -39.34 -0.25 -0.49 16 24 Cl -0.03 -0.21 28.60 -51.86 -1.48 -1.70 16 25 C -0.12 -0.98 9.79 -39.54 -0.39 -1.37 16 26 C 0.16 1.69 7.25 -38.97 -0.28 1.41 16 27 F -0.10 -1.38 16.51 2.25 0.04 -1.34 16 28 H 0.06 0.30 7.56 -51.93 -0.39 -0.09 16 29 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 30 H 0.07 0.50 5.68 -51.93 -0.29 0.21 16 31 H 0.09 0.88 8.07 -51.92 -0.42 0.46 16 32 H 0.09 1.18 7.36 -51.93 -0.38 0.80 16 33 H 0.37 6.55 8.60 45.56 0.39 6.94 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.39 10.85 7.67 -40.82 -0.31 10.54 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.16 0.85 6.57 -52.49 -0.34 0.50 16 39 H 0.16 0.97 8.06 -52.48 -0.42 0.54 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -34.48 358.47 -6.91 -41.39 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -3.41 Total: 9.98 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.93 Total: 2.66 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.12 Total: -54.29 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.41 Total: -18.85 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.08 Total: -2.24 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.48 Total: -1.70 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.48 -6.91 -41.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507502465.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.278 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds