Wall clock time and date at job start Wed Apr 1 2020 05:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00416 * 2 1 4 4 C 1.52997 * 109.47134 * 270.00164 * 3 2 1 5 5 H 1.08998 * 109.47445 * 59.99340 * 4 3 2 6 6 O 1.42911 * 109.46763 * 299.99643 * 4 3 2 7 7 C 1.52995 * 109.47322 * 179.97438 * 4 3 2 8 8 N 1.46501 * 109.47394 * 184.99790 * 7 4 3 9 9 C 1.36929 * 120.00539 * 179.97438 * 8 7 4 10 10 H 1.08005 * 119.99825 * 359.97438 * 9 8 7 11 11 C 1.38818 * 120.00452 * 180.02562 * 9 8 7 12 12 N 1.31612 * 119.99599 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00104 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46968 * 59.99784 * 13 11 9 15 15 H 1.48493 * 109.47089 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47171 * 300.00016 * 13 11 9 17 17 C 1.34774 * 120.00189 * 179.97438 * 2 1 3 18 18 O 1.21584 * 120.00345 * 184.62454 * 17 2 1 19 19 C 1.47638 * 119.99805 * 4.62368 * 17 2 1 20 20 C 1.39709 * 120.14488 * 310.77822 * 19 17 2 21 21 C 1.37985 * 119.86644 * 180.02562 * 20 19 17 22 22 F 1.35101 * 119.92376 * 180.02562 * 21 20 19 23 23 C 1.38803 * 120.15359 * 0.02562 * 21 20 19 24 24 Cl 1.73603 * 119.85143 * 179.97438 * 23 21 20 25 25 C 1.38315 * 120.29409 * 359.97438 * 23 21 20 26 26 C 1.38263 * 120.13210 * 0.02562 * 25 23 21 27 27 F 1.35098 * 120.07826 * 179.97438 * 26 25 23 28 28 H 1.09000 * 109.47233 * 272.92286 * 1 2 3 29 29 H 1.09002 * 109.46755 * 32.92220 * 1 2 3 30 30 H 1.09002 * 109.46873 * 152.92055 * 1 2 3 31 31 H 1.09010 * 109.46798 * 29.99336 * 3 2 1 32 32 H 1.08998 * 109.47494 * 149.99534 * 3 2 1 33 33 H 0.96696 * 113.99598 * 299.99830 * 6 4 3 34 34 H 1.09000 * 109.46897 * 304.99341 * 7 4 3 35 35 H 1.08993 * 109.47814 * 64.99395 * 7 4 3 36 36 H 0.97006 * 119.99748 * 359.97438 * 8 7 4 37 37 H 0.97006 * 119.99877 * 180.02562 * 12 11 9 38 38 H 1.08002 * 120.06349 * 0.03981 * 20 19 17 39 39 H 1.08005 * 119.93434 * 179.73012 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5002 1.8407 -1.9564 6 8 3.2249 0.7143 -2.1161 7 6 3.2171 3.0356 -1.4425 8 7 3.3570 3.5187 -2.8185 9 6 4.0104 4.6959 -3.0678 10 1 4.4223 5.2686 -2.2500 11 6 4.1425 5.1539 -4.3716 12 7 3.6402 4.4562 -5.3682 13 14 5.0333 6.7602 -4.7116 14 1 6.4318 6.6640 -4.2216 15 1 5.0383 7.0238 -6.1729 16 1 4.3384 7.8696 -4.0104 17 6 2.1389 -1.1672 0.0005 18 8 3.3517 -1.1689 0.0854 19 6 1.4043 -2.4437 -0.1020 20 6 0.3091 -2.6916 0.7292 21 6 -0.3730 -3.8869 0.6289 22 9 -1.4326 -4.1277 1.4318 23 6 0.0269 -4.8425 -0.2949 24 17 -0.8365 -6.3439 -0.4140 25 6 1.1103 -4.6039 -1.1211 26 6 1.8024 -3.4103 -1.0307 27 9 2.8607 -3.1786 -1.8378 28 1 -0.3634 0.0524 1.0263 29 1 -0.3633 0.8627 -0.5586 30 1 -0.3633 -0.9150 -0.4678 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5139 33 1 4.0873 0.5459 -1.7125 34 1 2.6693 3.7710 -0.8533 35 1 4.2053 2.8851 -1.0081 36 1 2.9868 3.0045 -3.5530 37 1 3.7328 4.7760 -6.2793 38 1 -0.0032 -1.9491 1.4487 39 1 1.4192 -5.3533 -1.8349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507502465.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:25 Heat of formation + Delta-G solvation = -152.347322 kcal Electronic energy + Delta-G solvation = -28064.243505 eV Core-core repulsion = 23475.885233 eV Total energy + Delta-G solvation = -4588.358272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.21184 -50.17336 -41.54131 -39.77869 -38.64531 -37.73734 -36.54223 -35.88137 -33.30458 -32.85691 -31.42064 -30.70405 -28.07299 -27.25031 -25.44343 -24.57258 -23.87343 -22.66195 -21.10135 -19.23999 -19.11871 -18.97344 -18.68328 -18.03414 -17.68013 -17.20863 -16.86280 -16.63790 -16.52968 -16.47909 -16.16891 -15.88153 -15.54774 -15.29751 -15.14959 -14.82826 -14.51159 -14.24779 -14.06477 -14.03539 -13.85628 -13.68533 -13.36387 -12.97997 -12.91587 -12.77249 -12.68724 -12.40254 -12.27302 -12.21483 -12.05964 -11.82396 -11.29075 -11.05197 -10.96398 -10.37694 -9.90563 -9.65699 -9.01966 -7.95035 -5.25021 -0.80289 -0.40266 0.62267 1.31112 1.46315 1.50294 1.56378 1.69441 2.05205 2.55370 2.69225 2.81425 3.07754 3.29388 3.36710 3.51194 3.61960 3.74864 4.01164 4.03559 4.10734 4.21876 4.26833 4.35730 4.46053 4.48831 4.59343 4.59711 4.65740 4.76479 4.88428 4.92480 5.20614 5.23122 5.34786 5.46970 6.17606 6.25538 6.76580 6.92650 7.31932 8.08326 8.30747 9.28280 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.023581 B = 0.002164 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.095498 B =12936.278559 C =13362.439251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.595 5.595 3 C 0.095 3.905 4 C 0.093 3.907 5 H 0.092 0.908 6 O -0.568 6.568 7 C 0.124 3.876 8 N -0.742 5.742 9 C -0.248 4.248 10 H 0.078 0.922 11 C -0.079 4.079 12 N -0.971 5.971 13 Si 0.978 3.022 14 H -0.279 1.279 15 H -0.296 1.296 16 H -0.273 1.273 17 C 0.560 3.440 18 O -0.556 6.556 19 C -0.137 4.137 20 C -0.069 4.069 21 C 0.101 3.899 22 F -0.116 7.116 23 C -0.030 4.030 24 Cl -0.022 7.022 25 C -0.114 4.114 26 C 0.136 3.864 27 F -0.128 7.128 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.376 0.624 34 H 0.044 0.956 35 H 0.022 0.978 36 H 0.373 0.627 37 H 0.251 0.749 38 H 0.189 0.811 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.872 -20.946 17.258 30.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.326 5.326 3 C -0.029 4.029 4 C 0.033 3.967 5 H 0.110 0.890 6 O -0.373 6.373 7 C -0.003 4.003 8 N -0.385 5.385 9 C -0.380 4.380 10 H 0.096 0.904 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.806 3.194 14 H -0.205 1.205 15 H -0.222 1.222 16 H -0.199 1.199 17 C 0.348 3.652 18 O -0.434 6.434 19 C -0.142 4.142 20 C -0.088 4.088 21 C 0.080 3.920 22 F -0.094 7.094 23 C -0.058 4.058 24 Cl 0.007 6.993 25 C -0.133 4.133 26 C 0.115 3.885 27 F -0.106 7.106 28 H 0.115 0.885 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.143 0.857 32 H 0.103 0.897 33 H 0.223 0.777 34 H 0.062 0.938 35 H 0.040 0.960 36 H 0.205 0.795 37 H 0.060 0.940 38 H 0.206 0.794 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -13.775 -20.919 16.979 30.260 hybrid contribution 0.982 0.571 -0.677 1.322 sum -12.793 -20.348 16.302 29.043 Atomic orbital electron populations 1.22416 0.76824 1.04777 1.04393 1.47643 1.08549 1.04750 1.71619 1.22170 0.99301 0.85353 0.96050 1.22460 0.94538 0.86418 0.93287 0.89034 1.86537 1.33456 1.59416 1.57939 1.21441 0.97547 0.94466 0.86873 1.42471 1.67902 1.24662 1.03428 1.19637 1.27432 0.98433 0.92497 0.90374 1.25655 1.03083 1.02774 0.95587 1.69847 1.52308 1.41228 0.98739 0.85154 0.78518 0.79463 0.76266 1.20496 1.22239 1.19906 1.18107 0.86668 0.83965 0.76476 1.90803 1.14825 1.87395 1.50411 1.19843 0.98906 0.95514 0.99895 1.21327 0.91964 0.96501 0.99005 1.17090 0.88328 0.94058 0.92503 1.91603 1.52749 1.94359 1.70706 1.20904 0.96387 0.90228 0.98280 1.98437 1.74811 1.28759 1.97249 1.20966 0.94348 0.96766 1.01196 1.17659 0.86140 0.94004 0.90662 1.91609 1.53710 1.94597 1.70712 0.88529 0.89687 0.90136 0.85673 0.89744 0.77670 0.93781 0.96036 0.79487 0.94031 0.79352 0.80092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 9.09 127.77 1.16 1.83 16 2 N -0.59 -12.10 2.83 -850.42 -2.40 -14.50 16 3 C 0.09 2.13 5.18 86.38 0.45 2.58 16 4 C 0.09 2.97 3.27 30.59 0.10 3.07 16 5 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 6 O -0.57 -21.63 12.20 -146.79 -1.79 -23.42 16 7 C 0.12 4.80 5.90 86.38 0.51 5.31 16 8 N -0.74 -38.73 5.55 -343.46 -1.91 -40.63 16 9 C -0.25 -14.12 9.99 84.04 0.84 -13.28 16 10 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 11 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 12 N -0.97 -61.33 13.06 21.65 0.28 -61.05 16 13 Si 0.98 46.78 29.55 68.60 2.03 48.81 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 15 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 16 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 17 C 0.56 14.12 6.44 86.73 0.56 14.68 16 18 O -0.56 -18.46 15.32 -1.79 -0.03 -18.48 16 19 C -0.14 -2.69 4.90 -20.05 -0.10 -2.79 16 20 C -0.07 -0.85 7.59 22.57 0.17 -0.68 16 21 C 0.10 1.29 7.26 22.35 0.16 1.45 16 22 F -0.12 -1.50 16.82 44.97 0.76 -0.75 16 23 C -0.03 -0.40 6.33 22.42 0.14 -0.26 16 24 Cl -0.02 -0.28 28.60 -2.72 -0.08 -0.35 16 25 C -0.11 -1.68 9.79 22.29 0.22 -1.46 16 26 C 0.14 2.86 7.25 22.66 0.16 3.03 16 27 F -0.13 -3.59 16.51 44.97 0.74 -2.85 16 28 H 0.10 0.49 7.56 -2.39 -0.02 0.48 16 29 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 30 H 0.08 0.86 5.68 -2.39 -0.01 0.85 16 31 H 0.13 1.98 8.07 -2.38 -0.02 1.96 16 32 H 0.08 2.09 7.36 -2.39 -0.02 2.07 16 33 H 0.38 13.76 8.60 -74.06 -0.64 13.12 16 34 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.37 21.40 7.67 -92.70 -0.71 20.69 16 37 H 0.25 15.35 8.31 -92.70 -0.77 14.58 16 38 H 0.19 1.25 6.57 -2.91 -0.02 1.23 16 39 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -76.24 358.47 2.24 -74.00 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: -0.21 Total: 29.93 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 4.84 Total: 9.29 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -4.03 Total: -116.18 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -1.82 Total: -41.91 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 1.50 Total: -3.59 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.35 kcal Total: -76.24 2.24 -74.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507502465.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.344 kcal (2) G-P(sol) polarization free energy of solvation -76.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds