Wall clock time and date at job start Wed Apr 1 2020 05:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99742 * 2 1 4 4 H 1.48496 * 109.47106 * 240.00183 * 3 2 1 5 5 H 1.48505 * 109.46800 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47220 * 119.99853 * 3 2 1 7 7 C 1.37881 * 120.00617 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99777 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 O 1.42900 * 109.46721 * 180.02562 * 10 9 7 12 12 C 1.35984 * 116.99805 * 179.97438 * 11 10 9 13 13 C 1.38796 * 120.49619 * 0.27516 * 12 11 10 14 14 C 1.38782 * 118.44502 * 180.23967 * 13 12 11 15 15 C 1.38090 * 119.35920 * 359.75086 * 14 13 12 16 16 N 1.31949 * 120.95924 * 359.97438 * 15 14 13 17 17 C 1.32291 * 121.68937 * 0.02562 * 16 15 14 18 18 N 1.39473 * 119.72884 * 179.97438 * 17 16 15 19 19 C 1.34774 * 120.00245 * 359.97438 * 18 17 16 20 20 O 1.21535 * 119.99851 * 0.02562 * 19 18 17 21 21 C 1.48020 * 120.00161 * 180.02562 * 19 18 17 22 22 N 1.33045 * 120.11056 * 0.02562 * 21 19 18 23 23 C 1.31760 * 119.94255 * 179.97438 * 22 21 19 24 24 C 1.38775 * 120.16389 * 359.97438 * 23 22 21 25 25 N 1.32094 * 120.22476 * 0.02562 * 24 23 22 26 26 C 1.32237 * 120.05990 * 0.02562 * 25 24 23 27 27 Cl 1.73593 * 120.08521 * 180.02562 * 26 25 24 28 28 H 0.96995 * 120.00711 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47031 * 59.99744 * 9 7 2 30 30 H 1.09006 * 109.47088 * 300.00066 * 9 7 2 31 31 H 1.08998 * 109.47413 * 59.99982 * 10 9 7 32 32 H 1.09003 * 109.47195 * 299.99279 * 10 9 7 33 33 H 1.07997 * 120.77738 * 359.96775 * 13 12 11 34 34 H 1.08003 * 120.32027 * 179.72601 * 14 13 12 35 35 H 1.08002 * 119.51851 * 179.97438 * 15 14 13 36 36 H 0.97010 * 119.99805 * 180.02562 * 18 17 16 37 37 H 1.08002 * 119.92090 * 180.02562 * 23 22 21 38 38 H 1.08004 * 119.88666 * 179.75066 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2513 -2.4992 -0.0005 10 6 2.2456 -3.6620 -0.0005 11 8 1.5311 -4.8995 -0.0011 12 6 2.2718 -6.0399 -0.0018 13 6 3.6584 -5.9792 0.0040 14 6 4.3723 -7.1694 -0.0020 15 6 3.6883 -8.3690 -0.0082 16 7 2.3692 -8.3983 -0.0079 17 6 1.6494 -7.2883 -0.0023 18 7 0.2569 -7.3670 -0.0028 19 6 -0.3501 -8.5703 -0.0095 20 8 0.3159 -9.5869 -0.0146 21 6 -1.8280 -8.6537 -0.0106 22 7 -2.5592 -7.5423 -0.0055 23 6 -3.8745 -7.6204 -0.0070 24 6 -4.4994 -8.8594 -0.0144 25 7 -3.7798 -9.9671 -0.0195 26 6 -2.4592 -9.8990 -0.0170 27 17 -1.5128 -11.3543 -0.0244 28 1 -0.4851 0.8399 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6249 -2.5571 0.8897 31 1 2.8723 -3.6042 0.8894 32 1 2.8722 -3.6042 -0.8906 33 1 4.1699 -5.0281 0.0084 34 1 5.4522 -7.1575 -0.0023 35 1 4.2413 -9.2968 -0.0133 36 1 -0.2747 -6.5555 0.0009 37 1 -4.4678 -6.7179 -0.0033 38 1 -5.5779 -8.9183 -0.0115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542718788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:21 Heat of formation + Delta-G solvation = 30.173567 kcal Electronic energy + Delta-G solvation = -26682.361114 eV Core-core repulsion = 22552.606728 eV Total energy + Delta-G solvation = -4129.754386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74113 -40.78409 -39.12124 -37.77880 -37.03635 -35.12713 -34.66681 -33.47406 -32.09315 -31.56945 -30.55810 -29.13133 -26.19133 -25.43064 -24.99127 -23.61914 -22.82768 -21.39040 -20.58195 -18.87505 -18.53143 -17.87594 -17.59008 -17.09410 -16.27730 -16.13417 -16.10301 -15.64141 -15.35605 -14.92355 -14.68815 -14.58068 -14.50186 -13.95966 -13.62168 -13.46862 -12.86910 -12.55435 -12.40406 -12.28241 -12.06462 -11.93753 -11.74431 -11.49341 -11.08379 -10.98194 -10.76756 -10.69309 -10.48279 -10.04879 -9.82097 -9.69816 -9.65870 -9.41622 -9.24206 -9.05367 -8.51739 -7.69560 -6.17514 -4.22583 -0.19925 0.41841 1.19423 1.36093 1.42474 2.49576 2.58554 3.23760 3.27121 3.28348 3.29387 3.46914 3.51550 3.68464 3.84728 3.99081 4.33699 4.40023 4.49987 4.64469 4.75248 4.92931 5.07755 5.19181 5.23504 5.44141 5.58120 5.84554 5.89854 6.02674 6.15685 6.29301 6.46573 6.53829 6.57867 6.95756 7.19588 7.34003 7.53692 7.61692 7.82310 7.93839 8.14602 8.24070 8.82423 9.42199 10.93813 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.011534 B = 0.002730 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.092046 B =10255.806379 C =12662.428844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.314 6.314 12 C 0.073 3.927 13 C -0.148 4.148 14 C -0.156 4.156 15 C 0.075 3.925 16 N -0.443 5.443 17 C 0.325 3.675 18 N -0.630 5.630 19 C 0.561 3.439 20 O -0.446 6.446 21 C 0.049 3.951 22 N -0.393 5.393 23 C 0.056 3.944 24 C 0.093 3.907 25 N -0.436 5.436 26 C 0.168 3.832 27 Cl 0.030 6.970 28 H 0.264 0.736 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.146 0.854 34 H 0.135 0.865 35 H 0.158 0.842 36 H 0.433 0.567 37 H 0.190 0.810 38 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.398 -18.425 -0.004 18.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.226 6.226 12 C 0.021 3.979 13 C -0.175 4.175 14 C -0.177 4.177 15 C -0.081 4.081 16 N -0.158 5.158 17 C 0.093 3.907 18 N -0.279 5.279 19 C 0.343 3.657 20 O -0.313 6.313 21 C -0.093 4.093 22 N -0.111 5.111 23 C -0.107 4.107 24 C -0.069 4.069 25 N -0.153 5.153 26 C 0.002 3.998 27 Cl 0.059 6.941 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.175 0.825 36 H 0.273 0.727 37 H 0.207 0.793 38 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -4.637 -19.995 -0.013 20.526 hybrid contribution 0.721 2.258 0.006 2.371 sum -3.916 -17.737 -0.007 18.164 Atomic orbital electron populations 1.69949 1.06090 1.27175 1.49419 1.24973 0.94905 0.99365 0.94795 0.86553 0.79531 0.82583 0.78752 1.20069 1.21085 1.20076 1.20910 0.93015 0.90152 1.52646 0.92402 1.19120 0.94111 0.88829 0.98951 1.23413 0.97276 0.80288 0.99849 1.86131 1.36198 1.12902 1.87395 1.19582 0.91138 0.87079 1.00088 1.21620 0.92139 1.00443 1.03274 1.21915 1.01251 0.92508 1.02068 1.22403 0.88679 0.97940 0.99117 1.67593 1.08003 1.26815 1.13370 1.17706 0.84290 0.87165 1.01541 1.43134 1.03962 1.10221 1.70536 1.17566 0.84992 0.84241 0.78921 1.90984 1.63511 1.33369 1.43425 1.21876 0.96121 0.89041 1.02311 1.68565 1.07806 1.28774 1.05905 1.24091 0.90741 1.00043 0.95804 1.24177 1.02166 0.87738 0.92784 1.68066 1.04650 1.32439 1.10134 1.22786 0.90581 0.89919 0.96520 1.98488 1.67376 1.32996 1.95224 0.92591 0.95300 0.95313 0.92891 0.92902 0.83620 0.84695 0.82491 0.72699 0.79308 0.79575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.53 -14.07 9.11 -34.44 -0.31 -14.38 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 10 C 0.07 1.29 4.70 37.16 0.17 1.46 16 11 O -0.31 -5.82 9.38 -19.69 -0.18 -6.01 16 12 C 0.07 1.21 6.72 -38.91 -0.26 0.95 16 13 C -0.15 -2.11 9.14 -39.17 -0.36 -2.47 16 14 C -0.16 -1.88 10.10 -39.43 -0.40 -2.28 16 15 C 0.08 0.99 11.17 -17.56 -0.20 0.79 16 16 N -0.44 -7.21 7.87 -12.24 -0.10 -7.30 16 17 C 0.33 5.41 7.44 -154.52 -1.15 4.26 16 18 N -0.63 -9.84 5.38 -12.11 -0.07 -9.91 16 19 C 0.56 8.57 7.77 -12.25 -0.10 8.47 16 20 O -0.45 -7.50 12.21 5.34 0.07 -7.44 16 21 C 0.05 0.64 6.75 -82.82 -0.56 0.08 16 22 N -0.39 -4.56 9.71 -9.60 -0.09 -4.65 16 23 C 0.06 0.43 11.22 -17.38 -0.20 0.24 16 24 C 0.09 0.65 11.23 -17.24 -0.19 0.46 16 25 N -0.44 -4.61 10.48 -9.81 -0.10 -4.71 16 26 C 0.17 2.09 7.32 -16.86 -0.12 1.97 16 27 Cl 0.03 0.38 26.19 -51.86 -1.36 -0.97 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.98 7.69 -51.93 -0.40 0.58 16 32 H 0.05 0.98 7.71 -51.93 -0.40 0.58 16 33 H 0.15 1.92 6.44 -52.49 -0.34 1.58 16 34 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 35 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.43 6.52 7.39 -40.82 -0.30 6.22 16 37 H 0.19 0.77 8.06 -52.49 -0.42 0.34 16 38 H 0.19 0.49 8.06 -52.48 -0.42 0.06 16 LS Contribution 352.65 15.07 5.31 5.31 Total: -1.00 -32.76 352.65 -8.24 -41.00 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -3.52 Total: 2.16 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -3.92 Total: 1.66 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.38 Total: -51.25 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.12 Total: -13.45 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -1.36 Total: -0.97 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.76 -8.24 -41.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542718788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.174 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds