Wall clock time and date at job start Wed Apr 1 2020 05:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99742 * 2 1 4 4 H 1.48496 * 109.47106 * 240.00183 * 3 2 1 5 5 H 1.48505 * 109.46800 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47220 * 119.99853 * 3 2 1 7 7 C 1.37881 * 120.00617 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99777 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46940 * 180.02562 * 9 7 2 11 11 O 1.42900 * 109.46721 * 180.02562 * 10 9 7 12 12 C 1.35984 * 116.99805 * 179.97438 * 11 10 9 13 13 C 1.38796 * 120.49619 * 0.27516 * 12 11 10 14 14 C 1.38782 * 118.44502 * 180.23967 * 13 12 11 15 15 C 1.38090 * 119.35920 * 359.75086 * 14 13 12 16 16 N 1.31949 * 120.95924 * 359.97438 * 15 14 13 17 17 C 1.32291 * 121.68937 * 0.02562 * 16 15 14 18 18 N 1.39473 * 119.72884 * 179.97438 * 17 16 15 19 19 C 1.34774 * 120.00245 * 359.97438 * 18 17 16 20 20 O 1.21535 * 119.99851 * 0.02562 * 19 18 17 21 21 C 1.48020 * 120.00161 * 180.02562 * 19 18 17 22 22 N 1.33045 * 120.11056 * 0.02562 * 21 19 18 23 23 C 1.31760 * 119.94255 * 179.97438 * 22 21 19 24 24 C 1.38775 * 120.16389 * 359.97438 * 23 22 21 25 25 N 1.32094 * 120.22476 * 0.02562 * 24 23 22 26 26 C 1.32237 * 120.05990 * 0.02562 * 25 24 23 27 27 Cl 1.73593 * 120.08521 * 180.02562 * 26 25 24 28 28 H 0.96995 * 120.00711 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47031 * 59.99744 * 9 7 2 30 30 H 1.09006 * 109.47088 * 300.00066 * 9 7 2 31 31 H 1.08998 * 109.47413 * 59.99982 * 10 9 7 32 32 H 1.09003 * 109.47195 * 299.99279 * 10 9 7 33 33 H 1.07997 * 120.77738 * 359.96775 * 13 12 11 34 34 H 1.08003 * 120.32027 * 179.72601 * 14 13 12 35 35 H 1.08002 * 119.51851 * 179.97438 * 15 14 13 36 36 H 0.97010 * 119.99805 * 180.02562 * 18 17 16 37 37 H 1.08002 * 119.92090 * 180.02562 * 23 22 21 38 38 H 1.08004 * 119.88666 * 179.75066 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2513 -2.4992 -0.0005 10 6 2.2456 -3.6620 -0.0005 11 8 1.5311 -4.8995 -0.0011 12 6 2.2718 -6.0399 -0.0018 13 6 3.6584 -5.9792 0.0040 14 6 4.3723 -7.1694 -0.0020 15 6 3.6883 -8.3690 -0.0082 16 7 2.3692 -8.3983 -0.0079 17 6 1.6494 -7.2883 -0.0023 18 7 0.2569 -7.3670 -0.0028 19 6 -0.3501 -8.5703 -0.0095 20 8 0.3159 -9.5869 -0.0146 21 6 -1.8280 -8.6537 -0.0106 22 7 -2.5592 -7.5423 -0.0055 23 6 -3.8745 -7.6204 -0.0070 24 6 -4.4994 -8.8594 -0.0144 25 7 -3.7798 -9.9671 -0.0195 26 6 -2.4592 -9.8990 -0.0170 27 17 -1.5128 -11.3543 -0.0244 28 1 -0.4851 0.8399 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6249 -2.5571 0.8897 31 1 2.8723 -3.6042 0.8894 32 1 2.8722 -3.6042 -0.8906 33 1 4.1699 -5.0281 0.0084 34 1 5.4522 -7.1575 -0.0023 35 1 4.2413 -9.2968 -0.0133 36 1 -0.2747 -6.5555 0.0009 37 1 -4.4678 -6.7179 -0.0033 38 1 -5.5779 -8.9183 -0.0115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542718788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:20 Heat of formation + Delta-G solvation = 7.803122 kcal Electronic energy + Delta-G solvation = -26683.331170 eV Core-core repulsion = 22552.606728 eV Total energy + Delta-G solvation = -4130.724441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.60626 -41.88749 -40.27578 -39.07745 -37.94288 -36.18231 -35.59066 -35.41868 -33.02449 -32.75472 -32.15277 -30.39791 -27.17456 -27.04366 -25.83501 -24.89327 -23.98508 -22.88473 -21.86473 -20.00450 -19.45453 -19.14506 -18.44240 -18.20988 -17.95841 -17.34082 -17.27082 -16.86030 -16.52776 -16.21621 -15.90150 -15.81065 -15.42523 -15.17370 -14.72469 -14.43447 -14.32848 -14.14021 -13.62780 -13.43137 -13.31222 -13.07925 -12.82254 -12.72111 -12.71663 -12.44107 -12.35001 -11.90368 -11.70840 -11.62954 -11.50364 -11.40273 -10.61355 -10.58876 -10.49988 -10.38797 -10.12391 -8.88745 -8.23899 -6.36635 -1.02228 -0.34627 0.11269 0.28666 0.49070 1.43435 1.46155 1.52957 1.53633 1.53981 2.11357 2.41317 2.45366 2.62774 2.87283 2.96781 3.00421 3.11079 3.47932 3.71680 3.77872 3.85384 4.01845 4.12534 4.23968 4.30401 4.33701 4.47070 4.75818 4.94921 4.98522 5.11033 5.20045 5.32554 5.51831 5.51918 5.72748 5.75295 6.00291 6.09124 6.26641 6.33491 6.76652 6.78109 7.12399 7.33235 8.88552 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.011534 B = 0.002730 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.092046 B =10255.806379 C =12662.428844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.031 3.969 10 C 0.083 3.917 11 O -0.330 6.330 12 C 0.045 3.955 13 C -0.147 4.147 14 C -0.140 4.140 15 C 0.076 3.924 16 N -0.469 5.469 17 C 0.307 3.693 18 N -0.634 5.634 19 C 0.557 3.443 20 O -0.470 6.470 21 C 0.025 3.975 22 N -0.419 5.419 23 C 0.066 3.934 24 C 0.118 3.882 25 N -0.452 5.452 26 C 0.158 3.842 27 Cl 0.015 6.985 28 H 0.266 0.734 29 H 0.001 0.999 30 H 0.001 0.999 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.159 0.841 34 H 0.178 0.822 35 H 0.190 0.810 36 H 0.431 0.569 37 H 0.230 0.770 38 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.722 -18.067 -0.001 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.089 0.911 9 C -0.007 4.007 10 C 0.009 3.991 11 O -0.244 6.244 12 C -0.006 4.006 13 C -0.174 4.174 14 C -0.160 4.160 15 C -0.081 4.081 16 N -0.185 5.185 17 C 0.076 3.924 18 N -0.282 5.282 19 C 0.341 3.659 20 O -0.339 6.339 21 C -0.115 4.115 22 N -0.137 5.137 23 C -0.098 4.098 24 C -0.045 4.045 25 N -0.169 5.169 26 C -0.007 4.007 27 Cl 0.044 6.956 28 H 0.075 0.925 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.176 0.824 34 H 0.195 0.805 35 H 0.206 0.794 36 H 0.271 0.729 37 H 0.246 0.754 38 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.916 -19.672 -0.010 20.058 hybrid contribution 0.389 2.084 0.005 2.120 sum -3.528 -17.588 -0.005 17.938 Atomic orbital electron populations 1.70091 1.07889 1.28181 1.50590 1.25955 0.95760 1.03398 0.94300 0.85426 0.78194 0.77653 0.79343 1.18962 1.21007 1.18970 1.21372 0.93868 0.91030 1.52075 0.91070 1.18933 0.94501 0.90994 0.96232 1.22977 0.95631 0.79553 1.00960 1.86056 1.36740 1.13128 1.88428 1.19750 0.92236 0.86093 1.02508 1.21918 0.91181 1.02021 1.02283 1.22319 1.03174 0.90971 0.99584 1.23090 0.87902 0.99892 0.97241 1.67653 1.09624 1.26877 1.14322 1.17903 0.84761 0.87422 1.02355 1.43213 1.03970 1.10364 1.70654 1.17949 0.86133 0.83733 0.78114 1.90939 1.64479 1.33814 1.44669 1.21485 0.95000 0.89866 1.05145 1.68544 1.09759 1.28457 1.06920 1.24893 0.89542 1.02065 0.93342 1.25098 1.04118 0.86347 0.88917 1.68150 1.03722 1.34024 1.11011 1.22716 0.91371 0.89134 0.97445 1.98469 1.68115 1.33660 1.95394 0.92512 0.98084 0.98089 0.91665 0.91692 0.82373 0.80455 0.79358 0.72946 0.75353 0.74390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.22 13.29 21.45 0.28 -53.93 16 2 C 0.00 0.26 5.46 84.66 0.46 0.72 16 3 Si 0.97 41.81 29.54 68.60 2.03 43.84 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.55 -29.15 9.11 25.60 0.23 -28.92 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.56 5.34 29.85 0.16 1.72 16 10 C 0.08 3.28 4.70 71.98 0.34 3.62 16 11 O -0.33 -12.66 9.38 -93.37 -0.88 -13.54 16 12 C 0.04 1.50 6.72 22.71 0.15 1.66 16 13 C -0.15 -3.97 9.14 22.53 0.21 -3.77 16 14 C -0.14 -2.97 10.10 22.36 0.23 -2.74 16 15 C 0.08 1.85 11.17 84.64 0.95 2.79 16 16 N -0.47 -15.36 7.87 -192.64 -1.52 -16.88 16 17 C 0.31 10.53 7.44 133.02 0.99 11.52 16 18 N -0.63 -21.08 5.38 -310.50 -1.67 -22.75 16 19 C 0.56 18.08 7.77 86.84 0.67 18.76 16 20 O -0.47 -16.70 12.21 -3.83 -0.05 -16.75 16 21 C 0.02 0.67 6.75 41.89 0.28 0.95 16 22 N -0.42 -9.76 9.71 -184.28 -1.79 -11.55 16 23 C 0.07 0.88 11.22 84.83 0.95 1.83 16 24 C 0.12 1.31 11.23 84.78 0.95 2.26 16 25 N -0.45 -9.02 10.48 -184.96 -1.94 -10.96 16 26 C 0.16 4.00 7.32 84.97 0.62 4.62 16 27 Cl 0.01 0.39 26.19 -2.72 -0.07 0.32 16 28 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 31 H 0.07 2.39 7.69 -2.39 -0.02 2.37 16 32 H 0.06 2.38 7.71 -2.39 -0.02 2.36 16 33 H 0.16 3.80 6.44 -2.91 -0.02 3.78 16 34 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 35 H 0.19 3.25 8.06 -2.91 -0.02 3.23 16 36 H 0.43 14.07 7.39 -92.70 -0.69 13.38 16 37 H 0.23 1.03 8.06 -2.91 -0.02 1.00 16 38 H 0.24 0.01 8.06 -2.91 -0.02 -0.02 16 Total: -1.00 -75.34 352.65 2.05 -73.28 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.45 Total: 13.88 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 7.20 Total: 15.03 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -6.63 Total: -116.07 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.92 Total: -30.28 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 17 Polarization: 0.39 SS G_CDS: -0.07 Total: 0.32 kcal Total: -75.34 2.05 -73.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542718788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.088 kcal (2) G-P(sol) polarization free energy of solvation -75.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds