Wall clock time and date at job start Wed Apr 1 2020 04:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46750 * 298.46173 * 3 2 1 5 5 C 1.36825 * 120.00070 * 97.01246 * 4 3 2 6 6 H 1.08004 * 119.99818 * 161.23532 * 5 4 3 7 7 C 1.38976 * 120.00418 * 341.23936 * 5 4 3 8 8 N 1.31420 * 119.99356 * 342.18439 * 7 5 4 9 9 Si 1.86795 * 120.00465 * 162.18026 * 7 5 4 10 10 H 1.48503 * 109.47062 * 60.00165 * 9 7 5 11 11 H 1.48503 * 109.47054 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47240 * 300.00202 * 9 7 5 13 13 C 1.34782 * 119.99562 * 277.00469 * 4 3 2 14 14 O 1.21841 * 119.99476 * 182.84792 * 13 4 3 15 15 C 1.46120 * 120.00495 * 2.85658 * 13 4 3 16 16 N 1.32593 * 125.57097 * 4.94030 * 15 13 4 17 17 C 1.32008 * 109.87350 * 179.97438 * 16 15 13 18 18 S 1.76203 * 126.02615 * 180.02562 * 17 16 15 19 19 N 1.65604 * 107.21784 * 269.97686 * 18 17 16 20 20 O 1.42099 * 106.40482 * 23.51946 * 18 17 16 21 21 O 1.42103 * 106.40123 * 156.43925 * 18 17 16 22 22 C 1.39435 * 107.94609 * 0.02562 * 17 16 15 23 23 C 1.40352 * 133.41688 * 179.97438 * 22 17 16 24 24 C 1.36390 * 119.20114 * 179.97438 * 23 22 17 25 25 C 1.40300 * 119.58537 * 0.02562 * 24 23 22 26 26 C 1.35211 * 120.38947 * 359.95681 * 25 24 23 27 27 N 1.36176 * 120.59565 * 0.04333 * 26 25 24 28 28 H 4.40637 * 5.51488 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47255 * 178.46264 * 3 2 1 30 30 H 1.08996 * 109.47041 * 58.46302 * 3 2 1 31 31 H 0.97002 * 120.00010 * 179.97438 * 8 7 5 32 32 H 0.96998 * 119.99801 * 0.02562 * 19 18 17 33 33 H 0.96994 * 120.00045 * 180.02562 * 19 18 17 34 34 H 1.08004 * 120.39795 * 359.72514 * 23 22 17 35 35 H 1.07994 * 120.21018 * 179.97438 * 24 23 22 36 36 H 1.07998 * 119.80686 * 179.97438 * 25 24 23 37 37 H 1.07995 * 119.70077 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.6574 1.2143 5 6 3.4996 -1.9756 1.1785 6 1 4.1298 -2.3827 1.9555 7 6 3.0595 -2.7907 0.1425 8 7 2.0369 -2.4207 -0.5954 9 14 3.9214 -4.4118 -0.2013 10 1 3.8376 -5.2814 0.9996 11 1 3.2644 -5.0882 -1.3485 12 1 5.3472 -4.1549 -0.5278 13 6 3.2246 0.0358 2.3667 14 8 3.6795 -0.4965 3.3638 15 6 2.7765 1.4256 2.4203 16 7 2.1817 2.0828 1.4343 17 6 1.9101 3.3166 1.8170 18 16 1.1225 4.5547 0.8415 19 7 2.3141 5.3757 0.0361 20 8 0.3697 3.8671 -0.1482 21 8 0.5457 5.4782 1.7545 22 6 2.3565 3.4674 3.1294 23 6 2.3396 4.5378 4.0370 24 6 2.8694 4.3632 5.2817 25 6 3.4206 3.1215 5.6320 26 6 3.4278 2.1015 4.7444 27 7 2.9020 2.2630 3.4987 28 1 -1.0499 0.0001 0.0003 29 1 3.0089 1.0281 -0.0276 30 1 3.0096 -0.5367 -0.8759 31 1 1.7299 -2.9894 -1.3189 32 1 3.2434 5.1271 0.1603 33 1 2.0826 6.1053 -0.5597 34 1 1.9158 5.4895 3.7520 35 1 2.8653 5.1759 5.9929 36 1 3.8414 2.9795 6.6164 37 1 3.8546 1.1503 5.0260 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556319893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:47 Heat of formation + Delta-G solvation = 65.739650 kcal Electronic energy + Delta-G solvation = -28757.167809 eV Core-core repulsion = 24630.999390 eV Total energy + Delta-G solvation = -4126.168418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.79698 -38.64643 -37.41756 -36.85224 -35.60759 -35.35506 -33.38565 -33.12002 -32.24863 -31.13757 -30.93337 -28.60558 -26.43345 -25.25499 -23.94686 -23.05819 -22.93237 -20.10240 -19.28710 -17.94426 -17.80762 -17.36187 -17.09187 -17.00747 -16.47183 -16.31298 -15.87674 -15.55872 -15.31473 -15.19105 -14.75238 -14.32763 -14.15621 -13.91426 -12.95008 -12.52788 -12.47607 -12.40743 -12.09494 -12.04579 -12.03155 -11.82759 -11.69463 -11.67069 -11.31448 -11.06734 -10.91110 -10.66651 -10.49232 -10.43908 -9.92471 -9.50338 -9.31313 -9.20037 -8.84142 -8.55335 -8.02036 -7.75497 -6.51662 -4.03358 0.51346 0.66419 0.89957 2.29838 2.45262 3.07748 3.16132 3.17459 3.19206 3.36850 3.81626 3.86245 4.06150 4.16156 4.27428 4.40834 4.49406 4.56447 4.69740 4.80402 4.89264 4.95601 5.31282 5.45448 5.53286 5.76237 5.82851 5.85534 6.00803 6.04442 6.11800 6.42643 6.68819 6.86506 7.03142 7.05046 7.30022 7.35464 7.60089 7.85584 8.22686 8.87891 9.08981 9.17641 9.65544 10.45163 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.004553 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.044195 B = 6148.771044 C = 7833.376171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.091 4.091 3 C 0.226 3.774 4 N -0.388 5.388 5 C -0.311 4.311 6 H 0.111 0.889 7 C 0.035 3.965 8 N -0.837 5.837 9 Si 0.934 3.066 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.270 1.270 13 C 0.498 3.502 14 O -0.598 6.598 15 C 0.153 3.847 16 N -0.322 5.322 17 C -0.578 4.578 18 S 2.740 3.260 19 N -1.251 6.251 20 O -0.943 6.943 21 O -0.969 6.969 22 C 0.110 3.890 23 C -0.111 4.111 24 C -0.085 4.085 25 C -0.155 4.155 26 C 0.091 3.909 27 N -0.325 5.325 28 H 0.194 0.806 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.276 0.724 32 H 0.416 0.584 33 H 0.417 0.583 34 H 0.165 0.835 35 H 0.145 0.855 36 H 0.155 0.845 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.533 15.356 4.765 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.092 4.092 3 C 0.104 3.896 4 N -0.101 5.101 5 C -0.439 4.439 6 H 0.129 0.871 7 C -0.173 4.173 8 N -0.472 5.472 9 Si 0.759 3.241 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.195 1.195 13 C 0.286 3.714 14 O -0.485 6.485 15 C -0.104 4.104 16 N -0.038 5.038 17 C -0.797 4.797 18 S 2.825 3.175 19 N -0.925 5.925 20 O -0.931 6.931 21 O -0.958 6.958 22 C -0.008 4.008 23 C -0.130 4.130 24 C -0.108 4.108 25 C -0.175 4.175 26 C -0.033 4.033 27 N 0.008 4.992 28 H 0.212 0.788 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.087 0.913 32 H 0.243 0.757 33 H 0.247 0.753 34 H 0.182 0.818 35 H 0.163 0.837 36 H 0.173 0.827 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 2.447 14.514 4.245 15.318 hybrid contribution 0.917 -0.728 0.665 1.347 sum 3.364 13.785 4.910 15.015 Atomic orbital electron populations 1.24075 0.95237 1.06432 1.02368 1.22502 0.93663 0.94911 0.98156 1.18637 0.85338 0.96456 0.89165 1.43497 1.50769 1.10019 1.05838 1.19773 1.29058 0.83817 1.11282 0.87123 1.25526 0.95029 1.00129 0.96659 1.70131 1.19811 1.38438 1.18831 0.85881 0.79403 0.80500 0.78294 1.19544 1.20638 1.19482 1.15871 0.88684 0.82179 0.84641 1.90656 1.53757 1.69886 1.34232 1.23661 1.08702 0.95742 0.82301 1.70490 1.06687 1.01479 1.25121 1.33165 1.29521 1.11376 1.05637 1.00538 0.71731 0.72214 0.73029 1.53099 1.23296 1.51701 1.64445 1.93626 1.67228 1.73878 1.58409 1.93559 1.74532 1.62173 1.65556 1.19367 0.99272 0.87004 0.95113 1.20916 1.01220 0.98153 0.92705 1.21278 0.95862 0.97547 0.96097 1.21027 1.03379 0.92586 1.00488 1.22358 0.96472 1.02473 0.82040 1.42794 1.34853 1.10670 1.10875 0.78839 0.89666 0.87488 0.91278 0.75710 0.75271 0.81782 0.83725 0.82728 0.79747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -6.33 19.25 29.55 0.57 -5.76 16 2 C -0.09 -2.28 9.95 -37.12 -0.37 -2.65 16 3 C 0.23 5.46 4.75 -6.82 -0.03 5.43 16 4 N -0.39 -10.04 2.60 -119.62 -0.31 -10.35 16 5 C -0.31 -8.30 9.33 -15.05 -0.14 -8.44 16 6 H 0.11 3.01 7.35 -52.48 -0.39 2.63 16 7 C 0.03 0.88 4.95 -17.45 -0.09 0.79 16 8 N -0.84 -21.62 9.36 55.50 0.52 -21.11 16 9 Si 0.93 19.53 29.59 -169.99 -5.03 14.50 16 10 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 13 C 0.50 12.54 7.51 -13.10 -0.10 12.44 16 14 O -0.60 -15.79 15.00 5.06 0.08 -15.71 16 15 C 0.15 3.35 7.44 -153.85 -1.14 2.20 16 16 N -0.32 -6.74 6.51 -9.83 -0.06 -6.80 16 17 C -0.58 -10.18 7.19 -17.03 -0.12 -10.31 16 18 S 2.74 40.56 6.44 -107.50 -0.69 39.87 16 19 N -1.25 -12.04 9.55 60.35 0.58 -11.46 16 20 O -0.94 -17.82 18.02 -57.17 -1.03 -18.85 16 21 O -0.97 -14.92 16.48 -57.17 -0.94 -15.87 16 22 C 0.11 1.79 6.69 -84.18 -0.56 1.23 16 23 C -0.11 -1.37 9.74 -39.45 -0.38 -1.76 16 24 C -0.09 -0.84 10.08 -39.47 -0.40 -1.24 16 25 C -0.15 -1.63 9.98 -39.88 -0.40 -2.03 16 26 C 0.09 1.36 10.52 -16.70 -0.18 1.19 16 27 N -0.33 -5.94 2.96 -58.88 -0.17 -6.12 16 28 H 0.19 4.00 7.80 -54.10 -0.42 3.58 16 29 H 0.09 1.89 5.81 -51.93 -0.30 1.59 16 30 H 0.11 2.61 6.33 -51.93 -0.33 2.28 16 31 H 0.28 6.76 8.31 -40.82 -0.34 6.43 16 32 H 0.42 3.28 8.92 -34.47 -0.31 2.97 16 33 H 0.42 2.93 8.96 -34.47 -0.31 2.62 16 34 H 0.16 1.76 6.96 -52.48 -0.37 1.39 16 35 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.19 2.84 6.78 -52.49 -0.36 2.48 16 LS Contribution 338.55 15.07 5.10 5.10 Total: -1.00 -36.36 338.55 -8.07 -44.43 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -2.76 Total: 11.25 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -3.34 Total: -8.90 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.55 Total: -55.84 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -1.90 Total: -50.43 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Atomic # 16 Polarization: 40.56 SS G_CDS: -0.69 Total: 39.87 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.36 -8.07 -44.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556319893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.175 kcal (2) G-P(sol) polarization free energy of solvation -36.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds