Wall clock time and date at job start Wed Apr 1 2020 04:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46750 * 298.46173 * 3 2 1 5 5 C 1.36825 * 120.00070 * 97.01246 * 4 3 2 6 6 H 1.08004 * 119.99818 * 161.23532 * 5 4 3 7 7 C 1.38976 * 120.00418 * 341.23936 * 5 4 3 8 8 N 1.31420 * 119.99356 * 342.18439 * 7 5 4 9 9 Si 1.86795 * 120.00465 * 162.18026 * 7 5 4 10 10 H 1.48503 * 109.47062 * 60.00165 * 9 7 5 11 11 H 1.48503 * 109.47054 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47240 * 300.00202 * 9 7 5 13 13 C 1.34782 * 119.99562 * 277.00469 * 4 3 2 14 14 O 1.21841 * 119.99476 * 182.84792 * 13 4 3 15 15 C 1.46120 * 120.00495 * 2.85658 * 13 4 3 16 16 N 1.32593 * 125.57097 * 4.94030 * 15 13 4 17 17 C 1.32008 * 109.87350 * 179.97438 * 16 15 13 18 18 S 1.76203 * 126.02615 * 180.02562 * 17 16 15 19 19 N 1.65604 * 107.21784 * 269.97686 * 18 17 16 20 20 O 1.42099 * 106.40482 * 23.51946 * 18 17 16 21 21 O 1.42103 * 106.40123 * 156.43925 * 18 17 16 22 22 C 1.39435 * 107.94609 * 0.02562 * 17 16 15 23 23 C 1.40352 * 133.41688 * 179.97438 * 22 17 16 24 24 C 1.36390 * 119.20114 * 179.97438 * 23 22 17 25 25 C 1.40300 * 119.58537 * 0.02562 * 24 23 22 26 26 C 1.35211 * 120.38947 * 359.95681 * 25 24 23 27 27 N 1.36176 * 120.59565 * 0.04333 * 26 25 24 28 28 H 4.40637 * 5.51488 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47255 * 178.46264 * 3 2 1 30 30 H 1.08996 * 109.47041 * 58.46302 * 3 2 1 31 31 H 0.97002 * 120.00010 * 179.97438 * 8 7 5 32 32 H 0.96998 * 119.99801 * 0.02562 * 19 18 17 33 33 H 0.96994 * 120.00045 * 180.02562 * 19 18 17 34 34 H 1.08004 * 120.39795 * 359.72514 * 23 22 17 35 35 H 1.07994 * 120.21018 * 179.97438 * 24 23 22 36 36 H 1.07998 * 119.80686 * 179.97438 * 25 24 23 37 37 H 1.07995 * 119.70077 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.6574 1.2143 5 6 3.4996 -1.9756 1.1785 6 1 4.1298 -2.3827 1.9555 7 6 3.0595 -2.7907 0.1425 8 7 2.0369 -2.4207 -0.5954 9 14 3.9214 -4.4118 -0.2013 10 1 3.8376 -5.2814 0.9996 11 1 3.2644 -5.0882 -1.3485 12 1 5.3472 -4.1549 -0.5278 13 6 3.2246 0.0358 2.3667 14 8 3.6795 -0.4965 3.3638 15 6 2.7765 1.4256 2.4203 16 7 2.1817 2.0828 1.4343 17 6 1.9101 3.3166 1.8170 18 16 1.1225 4.5547 0.8415 19 7 2.3141 5.3757 0.0361 20 8 0.3697 3.8671 -0.1482 21 8 0.5457 5.4782 1.7545 22 6 2.3565 3.4674 3.1294 23 6 2.3396 4.5378 4.0370 24 6 2.8694 4.3632 5.2817 25 6 3.4206 3.1215 5.6320 26 6 3.4278 2.1015 4.7444 27 7 2.9020 2.2630 3.4987 28 1 -1.0499 0.0001 0.0003 29 1 3.0089 1.0281 -0.0276 30 1 3.0096 -0.5367 -0.8759 31 1 1.7299 -2.9894 -1.3189 32 1 3.2434 5.1271 0.1603 33 1 2.0826 6.1053 -0.5597 34 1 1.9158 5.4895 3.7520 35 1 2.8653 5.1759 5.9929 36 1 3.8414 2.9795 6.6164 37 1 3.8546 1.1503 5.0260 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556319893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:46 Heat of formation + Delta-G solvation = 37.598354 kcal Electronic energy + Delta-G solvation = -28758.388107 eV Core-core repulsion = 24630.999390 eV Total energy + Delta-G solvation = -4127.388717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.11088 -40.44421 -38.69457 -38.10181 -37.24478 -36.88601 -34.59539 -34.12261 -34.02732 -33.05001 -32.19662 -29.95890 -28.29303 -27.02271 -25.10891 -24.53746 -24.22115 -21.64535 -20.44783 -19.78872 -19.12638 -18.62547 -18.49580 -18.28045 -18.13295 -17.58273 -17.26655 -16.89700 -16.54449 -16.42024 -16.23430 -15.91695 -15.72405 -15.48059 -14.76867 -14.28474 -14.21340 -13.57675 -13.46792 -13.37553 -13.22424 -13.15906 -13.11609 -12.95153 -12.82185 -12.62682 -12.48238 -12.16732 -12.02816 -11.43642 -11.33047 -11.28522 -11.12581 -10.77969 -10.68944 -10.41099 -9.94716 -9.03574 -8.41155 -6.05153 -0.60141 -0.43283 -0.29080 0.80252 1.14308 1.42564 1.45291 1.55022 1.97642 2.11549 2.22771 2.30546 2.35081 2.55723 2.73888 2.91545 3.01785 3.02561 3.32699 3.55152 3.70345 3.85731 3.95068 4.00186 4.16636 4.56529 4.60346 4.76568 4.87460 4.93697 5.00719 5.07193 5.29004 5.35998 5.44225 5.44443 5.75660 5.87444 6.16015 6.36699 6.38020 6.93127 7.17424 7.25728 7.73821 8.55754 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.013179 B = 0.004553 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.044195 B = 6148.771044 C = 7833.376171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.113 4.113 3 C 0.236 3.764 4 N -0.407 5.407 5 C -0.352 4.352 6 H 0.091 0.909 7 C 0.003 3.997 8 N -0.863 5.863 9 Si 1.002 2.998 10 H -0.274 1.274 11 H -0.271 1.271 12 H -0.261 1.261 13 C 0.500 3.500 14 O -0.625 6.625 15 C 0.091 3.909 16 N -0.330 5.330 17 C -0.602 4.602 18 S 2.767 3.233 19 N -1.229 6.229 20 O -0.988 6.988 21 O -0.972 6.972 22 C 0.115 3.885 23 C -0.121 4.121 24 C -0.052 4.052 25 C -0.111 4.111 26 C 0.042 3.958 27 N -0.323 5.323 28 H 0.222 0.778 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.279 0.721 32 H 0.427 0.573 33 H 0.432 0.568 34 H 0.188 0.812 35 H 0.204 0.796 36 H 0.204 0.796 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.901 18.574 6.892 20.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.115 4.115 3 C 0.114 3.886 4 N -0.122 5.122 5 C -0.480 4.480 6 H 0.109 0.891 7 C -0.203 4.203 8 N -0.498 5.498 9 Si 0.824 3.176 10 H -0.199 1.199 11 H -0.196 1.196 12 H -0.185 1.185 13 C 0.289 3.711 14 O -0.514 6.514 15 C -0.163 4.163 16 N -0.047 5.047 17 C -0.820 4.820 18 S 2.849 3.151 19 N -0.911 5.911 20 O -0.977 6.977 21 O -0.961 6.961 22 C -0.003 4.003 23 C -0.140 4.140 24 C -0.074 4.074 25 C -0.130 4.130 26 C -0.083 4.083 27 N 0.011 4.989 28 H 0.239 0.761 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.257 0.743 33 H 0.266 0.734 34 H 0.205 0.795 35 H 0.221 0.779 36 H 0.221 0.779 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.836 17.705 6.366 19.027 hybrid contribution 0.812 -1.339 0.340 1.602 sum 3.648 16.366 6.706 18.059 Atomic orbital electron populations 1.24850 0.96264 1.05973 1.01812 1.22937 0.94413 0.95402 0.98699 1.18557 0.85098 0.96713 0.88261 1.43588 1.51959 1.10041 1.06566 1.19767 1.30864 0.84981 1.12340 0.89093 1.26316 0.95157 1.03080 0.95714 1.70222 1.20664 1.39673 1.19195 0.84888 0.78651 0.76133 0.77973 1.19880 1.19568 1.18544 1.16321 0.87045 0.83665 0.84061 1.90591 1.54507 1.71291 1.35004 1.22715 1.13327 0.95395 0.84834 1.70274 1.05877 1.02860 1.25657 1.33572 1.30570 1.10756 1.07131 0.99683 0.71605 0.71407 0.72374 1.52591 1.22912 1.51402 1.64178 1.93577 1.69242 1.75067 1.59778 1.93538 1.75159 1.61668 1.65749 1.19915 0.97914 0.87256 0.95241 1.21394 1.01899 0.97660 0.93075 1.22021 0.91606 0.98241 0.95547 1.21733 0.99392 0.91067 1.00831 1.22652 0.99407 1.04047 0.82177 1.42769 1.34619 1.10545 1.11017 0.76134 0.88454 0.88603 0.91090 0.74324 0.73367 0.79516 0.77865 0.77888 0.81517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -13.49 19.25 74.32 1.43 -12.06 16 2 C -0.11 -5.96 9.95 31.13 0.31 -5.65 16 3 C 0.24 12.12 4.75 84.57 0.40 12.52 16 4 N -0.41 -22.60 2.60 -650.52 -1.69 -24.29 16 5 C -0.35 -20.07 9.33 84.09 0.78 -19.29 16 6 H 0.09 5.36 7.35 -2.91 -0.02 5.34 16 7 C 0.00 0.16 4.95 84.93 0.42 0.58 16 8 N -0.86 -46.48 9.36 21.67 0.20 -46.28 16 9 Si 1.00 41.53 29.59 68.60 2.03 43.56 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 11 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 12 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 13 C 0.50 26.95 7.51 86.29 0.65 27.60 16 14 O -0.62 -35.40 15.00 -4.80 -0.07 -35.47 16 15 C 0.09 4.20 7.44 135.47 1.01 5.21 16 16 N -0.33 -14.35 6.51 -185.03 -1.20 -15.56 16 17 C -0.60 -21.12 7.19 84.95 0.61 -20.51 16 18 S 2.77 79.23 6.44 -56.49 -0.36 78.87 16 19 N -1.23 -21.43 9.55 37.02 0.35 -21.08 16 20 O -0.99 -37.64 18.02 -128.00 -2.31 -39.95 16 21 O -0.97 -27.73 16.48 -128.00 -2.11 -29.84 16 22 C 0.12 3.59 6.69 39.09 0.26 3.85 16 23 C -0.12 -2.45 9.74 22.35 0.22 -2.24 16 24 C -0.05 -0.67 10.08 22.34 0.23 -0.44 16 25 C -0.11 -1.77 9.98 22.07 0.22 -1.55 16 26 C 0.04 1.19 10.52 83.32 0.88 2.07 16 27 N -0.32 -11.85 2.96 -340.21 -1.01 -12.86 16 28 H 0.22 9.24 7.80 -4.42 -0.03 9.21 16 29 H 0.10 4.63 5.81 -2.39 -0.01 4.62 16 30 H 0.10 5.02 6.33 -2.39 -0.02 5.00 16 31 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 32 H 0.43 5.96 8.92 -96.75 -0.86 5.09 16 33 H 0.43 5.08 8.96 -96.75 -0.87 4.22 16 34 H 0.19 3.00 6.96 -2.91 -0.02 2.98 16 35 H 0.20 0.48 8.06 -2.91 -0.02 0.45 16 36 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.17 5.33 6.78 -2.91 -0.02 5.31 16 Total: -1.00 -86.95 338.55 0.70 -86.25 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: -0.55 Total: 26.56 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 7.42 Total: -9.92 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -3.34 Total: -120.07 kcal Atomic # 8 Polarization: -100.77 SS G_CDS: -4.49 Total: -105.26 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 16 Polarization: 79.23 SS G_CDS: -0.36 Total: 78.87 kcal Total: -86.95 0.70 -86.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556319893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.853 kcal (2) G-P(sol) polarization free energy of solvation -86.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds