Wall clock time and date at job start Wed Apr 1 2020 04:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38296 * 127.15621 * 2 1 4 4 C 1.39776 * 126.56520 * 359.97438 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78815 * 4 3 2 6 6 C 1.40050 * 120.00203 * 185.78668 * 4 3 2 7 7 N 1.30831 * 120.00109 * 184.12765 * 6 4 3 8 8 Si 1.86798 * 119.99557 * 4.12583 * 6 4 3 9 9 H 1.48509 * 109.46934 * 180.02562 * 8 6 4 10 10 H 1.48495 * 109.47195 * 299.99556 * 8 6 4 11 11 H 1.48493 * 109.47416 * 59.99968 * 8 6 4 12 12 N 1.33119 * 106.86823 * 179.73754 * 3 2 1 13 13 N 1.28516 * 109.74920 * 0.25948 * 12 3 2 14 14 C 1.32323 * 110.20638 * 0.02562 * 13 12 3 15 15 S 1.76204 * 126.25959 * 179.97438 * 14 13 12 16 16 C 1.76200 * 99.99802 * 0.02562 * 15 14 13 17 17 N 1.32489 * 119.59509 * 359.72868 * 16 15 14 18 18 C 1.31738 * 121.77570 * 179.70952 * 17 16 15 19 19 C 1.39241 * 120.73950 * 0.56569 * 18 17 16 20 20 C 1.48392 * 120.44202 * 179.70388 * 19 18 17 21 21 N 1.34074 * 126.67903 * 179.71411 * 20 19 18 22 22 N 1.28989 * 107.26414 * 179.83727 * 21 20 19 23 23 N 1.28722 * 108.95155 * 0.42790 * 22 21 20 24 24 H 0.97011 * 125.33599 * 179.69152 * 23 22 21 25 25 N 1.28873 * 109.32837 * 359.72650 * 23 22 21 26 26 C 1.39917 * 119.11271 * 359.72506 * 19 18 17 27 27 C 1.38280 * 118.38355 * 359.97438 * 26 19 18 28 28 F 1.35102 * 120.41093 * 180.02562 * 27 26 19 29 29 H 1.09002 * 109.47177 * 89.99817 * 1 2 3 30 30 H 1.09004 * 109.47522 * 210.00472 * 1 2 3 31 31 H 1.09005 * 109.46865 * 330.00362 * 1 2 3 32 32 H 0.97000 * 119.99733 * 354.83658 * 7 6 4 33 33 H 1.08003 * 119.63002 * 180.28990 * 18 17 16 34 34 H 1.08008 * 120.80480 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3003 1.1022 0.0000 4 6 1.9085 2.4439 -0.0005 5 1 0.8638 2.7014 0.0934 6 6 2.8705 3.4544 -0.1227 7 7 2.5137 4.7105 -0.0422 8 14 4.6630 3.0084 -0.4007 9 1 5.4731 4.2496 -0.4945 10 1 5.1501 2.1849 0.7350 11 1 4.7912 2.2365 -1.6627 12 7 3.5489 0.6406 0.0058 13 7 3.5368 -0.6445 0.0039 14 6 2.2908 -1.0898 -0.0039 15 16 1.7877 -2.7785 -0.0098 16 6 3.3633 -3.5672 -0.0019 17 7 4.4641 -2.8298 0.0005 18 6 5.6636 -3.3742 0.0121 19 6 5.8172 -4.7581 0.0106 20 6 7.1717 -5.3643 0.0171 21 7 7.4634 -6.6729 0.0218 22 7 8.7490 -6.7785 0.0232 23 7 9.2653 -5.5994 0.0286 24 1 10.2153 -5.4028 0.0350 25 7 8.3224 -4.7208 0.0250 26 6 4.6774 -5.5695 0.0024 27 6 3.4364 -4.9596 -0.0034 28 9 2.3087 -5.7037 -0.0109 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.5749 4.9445 0.0269 33 1 6.5378 -2.7400 0.0185 34 1 4.7648 -6.6461 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581752543.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:33 Heat of formation + Delta-G solvation = 197.841952 kcal Electronic energy + Delta-G solvation = -26448.875899 eV Core-core repulsion = 22269.561064 eV Total energy + Delta-G solvation = -4179.314836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.061 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.06590 -44.71491 -40.93548 -39.96311 -34.85972 -34.08787 -33.93124 -33.60076 -32.16350 -30.76633 -29.98925 -26.80453 -25.72114 -25.20923 -25.07192 -23.48183 -22.36312 -21.46689 -20.29877 -19.57054 -18.26006 -18.18861 -17.54545 -17.40479 -17.29531 -16.01940 -15.97748 -15.36388 -15.07407 -14.95287 -14.26337 -14.18547 -13.75434 -13.70346 -13.33727 -13.18378 -12.96179 -12.64429 -12.59977 -12.55040 -12.00384 -11.82515 -11.53229 -11.42878 -11.27770 -10.99447 -10.76643 -10.00918 -9.96973 -9.75755 -9.67103 -9.39978 -9.03125 -8.91840 -8.58637 -8.40427 -7.47119 -7.19810 -4.89571 0.20135 0.86637 0.97626 1.41929 1.96663 2.02699 2.13430 2.87447 3.32850 3.52669 3.55882 3.62222 3.71676 3.83658 4.02595 4.07193 4.18076 4.39206 4.46086 4.64848 4.69477 4.99331 5.08444 5.19822 5.29719 5.41604 5.55186 5.66758 5.82376 5.84850 6.09525 6.29027 6.39669 6.64850 7.07833 7.35751 7.52714 7.71335 7.86852 8.01236 8.31162 8.51425 9.92667 10.13919 Molecular weight = 348.06amu Principal moments of inertia in cm(-1) A = 0.013132 B = 0.003315 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.740043 B = 8443.229985 C =10550.122113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.515 5.515 3 C 0.348 3.652 4 C -0.488 4.488 5 H 0.083 0.917 6 C 0.064 3.936 7 N -0.805 5.805 8 Si 1.112 2.888 9 H -0.312 1.312 10 H -0.258 1.258 11 H -0.279 1.279 12 N -0.418 5.418 13 N -0.189 5.189 14 C 0.012 3.988 15 S 0.166 5.834 16 C 0.093 3.907 17 N -0.389 5.389 18 C 0.156 3.844 19 C -0.065 4.065 20 C 0.230 3.770 21 N -0.269 5.269 22 N -0.050 5.050 23 N -0.225 5.225 24 H 0.477 0.523 25 N -0.285 5.285 26 C -0.054 4.054 27 C 0.055 3.945 28 F -0.121 7.121 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.284 0.716 33 H 0.175 0.825 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.222 -18.400 0.007 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.218 5.218 3 C 0.106 3.894 4 C -0.528 4.528 5 H 0.101 0.899 6 C -0.159 4.159 7 N -0.429 5.429 8 Si 0.940 3.060 9 H -0.242 1.242 10 H -0.184 1.184 11 H -0.206 1.206 12 N -0.270 5.270 13 N -0.032 5.032 14 C -0.359 4.359 15 S 0.410 5.590 16 C -0.160 4.160 17 N -0.098 5.098 18 C -0.009 4.009 19 C -0.076 4.076 20 C -0.051 4.051 21 N -0.142 5.142 22 N -0.045 5.045 23 N -0.072 5.072 24 H 0.331 0.669 25 N -0.137 5.137 26 C -0.083 4.083 27 C 0.025 3.975 28 F -0.099 7.099 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.192 0.808 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.120 -17.708 -0.113 19.086 hybrid contribution -1.885 -0.505 0.182 1.960 sum 5.235 -18.213 0.069 18.951 Atomic orbital electron populations 1.21558 0.77943 1.02956 1.02042 1.45835 1.06205 1.04719 1.64998 1.21734 0.85404 0.88941 0.93325 1.19423 0.97438 0.87288 1.48681 0.89887 1.27390 1.08572 0.91236 0.88662 1.70687 1.21597 1.18492 1.32109 0.82710 0.70497 0.72135 0.80645 1.24236 1.18383 1.20580 1.74166 1.15719 1.01830 1.35283 1.74782 1.14064 1.03783 1.10605 1.25376 0.91548 0.92802 1.26165 1.83498 0.98936 0.90089 1.86468 1.23696 1.00663 0.90915 1.00694 1.69076 0.96337 1.34305 1.10081 1.23218 0.96178 0.90506 0.91004 1.18063 0.86590 0.93894 1.09014 1.23292 0.93043 0.87070 1.01652 1.76089 1.03375 1.16837 1.17934 1.78896 1.03343 1.07489 1.14750 1.47743 1.11950 1.01592 1.45866 0.66876 1.75009 0.96628 1.20454 1.21582 1.21315 0.89048 1.01685 0.96299 1.17843 0.83268 0.87893 1.08519 1.91536 1.48570 1.75818 1.94021 0.92088 0.91420 0.90099 0.90520 0.80784 0.82150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.69 10.89 59.85 0.65 2.34 16 2 N -0.52 -11.63 3.26 -123.18 -0.40 -12.03 16 3 C 0.35 9.08 7.27 -154.85 -1.13 7.96 16 4 C -0.49 -12.83 9.49 -38.33 -0.36 -13.20 16 5 H 0.08 2.11 7.46 -52.49 -0.39 1.72 16 6 C 0.06 1.71 5.52 -17.30 -0.10 1.62 16 7 N -0.81 -21.33 13.66 55.55 0.76 -20.57 16 8 Si 1.11 27.63 25.89 -169.99 -4.40 23.23 16 9 H -0.31 -7.47 7.11 56.52 0.40 -7.07 16 10 H -0.26 -6.61 6.76 56.52 0.38 -6.22 16 11 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 12 N -0.42 -11.39 7.51 31.25 0.23 -11.16 16 13 N -0.19 -4.75 9.33 30.90 0.29 -4.46 16 14 C 0.01 0.28 8.04 -87.27 -0.70 -0.42 16 15 S 0.17 2.81 21.59 -107.50 -2.32 0.49 16 16 C 0.09 1.53 6.96 -16.82 -0.12 1.41 16 17 N -0.39 -7.01 7.11 -11.78 -0.08 -7.10 16 18 C 0.16 2.29 10.86 -17.22 -0.19 2.10 16 19 C -0.07 -0.82 5.89 -104.71 -0.62 -1.44 16 20 C 0.23 2.71 7.95 -156.28 -1.24 1.46 16 21 N -0.27 -3.15 12.30 32.15 0.40 -2.75 16 22 N -0.05 -0.49 13.47 60.35 0.81 0.33 16 23 N -0.23 -1.67 7.90 60.35 0.48 -1.20 16 24 H 0.48 1.21 8.96 -340.35 -3.05 -1.84 16 25 N -0.29 -2.97 12.10 32.16 0.39 -2.58 16 26 C -0.05 -0.63 9.81 -38.94 -0.38 -1.02 16 27 C 0.05 0.74 7.30 -39.12 -0.29 0.45 16 28 F -0.12 -1.56 16.77 2.25 0.04 -1.52 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 31 H 0.08 1.33 7.48 -51.93 -0.39 0.94 16 32 H 0.28 7.12 8.72 -40.82 -0.36 6.76 16 33 H 0.18 2.35 7.88 -52.48 -0.41 1.94 16 34 H 0.16 1.54 7.96 -52.48 -0.42 1.12 16 LS Contribution 326.32 15.07 4.92 4.92 Total: -1.00 -33.40 326.32 -8.03 -41.43 By element: Atomic # 1 Polarization: -3.64 SS G_CDS: -4.66 Total: -8.30 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -4.47 Total: 1.27 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: 2.87 Total: -61.51 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 27.63 SS G_CDS: -4.40 Total: 23.23 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -2.32 Total: 0.49 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.40 -8.03 -41.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581752543.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 239.271 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 205.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 197.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds