Wall clock time and date at job start Wed Apr 1 2020 04:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38296 * 127.15621 * 2 1 4 4 C 1.39776 * 126.56520 * 359.97438 * 3 2 1 5 5 H 1.07999 * 119.99778 * 5.78815 * 4 3 2 6 6 C 1.40050 * 120.00203 * 185.78668 * 4 3 2 7 7 N 1.30831 * 120.00109 * 184.12765 * 6 4 3 8 8 Si 1.86798 * 119.99557 * 4.12583 * 6 4 3 9 9 H 1.48509 * 109.46934 * 180.02562 * 8 6 4 10 10 H 1.48495 * 109.47195 * 299.99556 * 8 6 4 11 11 H 1.48493 * 109.47416 * 59.99968 * 8 6 4 12 12 N 1.33119 * 106.86823 * 179.73754 * 3 2 1 13 13 N 1.28516 * 109.74920 * 0.25948 * 12 3 2 14 14 C 1.32323 * 110.20638 * 0.02562 * 13 12 3 15 15 S 1.76204 * 126.25959 * 179.97438 * 14 13 12 16 16 C 1.76200 * 99.99802 * 0.02562 * 15 14 13 17 17 N 1.32489 * 119.59509 * 359.72868 * 16 15 14 18 18 C 1.31738 * 121.77570 * 179.70952 * 17 16 15 19 19 C 1.39241 * 120.73950 * 0.56569 * 18 17 16 20 20 C 1.48392 * 120.44202 * 179.70388 * 19 18 17 21 21 N 1.34074 * 126.67903 * 179.71411 * 20 19 18 22 22 N 1.28989 * 107.26414 * 179.83727 * 21 20 19 23 23 N 1.28722 * 108.95155 * 0.42790 * 22 21 20 24 24 H 0.97011 * 125.33599 * 179.69152 * 23 22 21 25 25 N 1.28873 * 109.32837 * 359.72650 * 23 22 21 26 26 C 1.39917 * 119.11271 * 359.72506 * 19 18 17 27 27 C 1.38280 * 118.38355 * 359.97438 * 26 19 18 28 28 F 1.35102 * 120.41093 * 180.02562 * 27 26 19 29 29 H 1.09002 * 109.47177 * 89.99817 * 1 2 3 30 30 H 1.09004 * 109.47522 * 210.00472 * 1 2 3 31 31 H 1.09005 * 109.46865 * 330.00362 * 1 2 3 32 32 H 0.97000 * 119.99733 * 354.83658 * 7 6 4 33 33 H 1.08003 * 119.63002 * 180.28990 * 18 17 16 34 34 H 1.08008 * 120.80480 * 179.97438 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3003 1.1022 0.0000 4 6 1.9085 2.4439 -0.0005 5 1 0.8638 2.7014 0.0934 6 6 2.8705 3.4544 -0.1227 7 7 2.5137 4.7105 -0.0422 8 14 4.6630 3.0084 -0.4007 9 1 5.4731 4.2496 -0.4945 10 1 5.1501 2.1849 0.7350 11 1 4.7912 2.2365 -1.6627 12 7 3.5489 0.6406 0.0058 13 7 3.5368 -0.6445 0.0039 14 6 2.2908 -1.0898 -0.0039 15 16 1.7877 -2.7785 -0.0098 16 6 3.3633 -3.5672 -0.0019 17 7 4.4641 -2.8298 0.0005 18 6 5.6636 -3.3742 0.0121 19 6 5.8172 -4.7581 0.0106 20 6 7.1717 -5.3643 0.0171 21 7 7.4634 -6.6729 0.0218 22 7 8.7490 -6.7785 0.0232 23 7 9.2653 -5.5994 0.0286 24 1 10.2153 -5.4028 0.0350 25 7 8.3224 -4.7208 0.0250 26 6 4.6774 -5.5695 0.0024 27 6 3.4364 -4.9596 -0.0034 28 9 2.3087 -5.7037 -0.0109 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.5749 4.9445 0.0269 33 1 6.5378 -2.7400 0.0185 34 1 4.7648 -6.6461 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581752543.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:33 Heat of formation + Delta-G solvation = 175.641531 kcal Electronic energy + Delta-G solvation = -26449.838582 eV Core-core repulsion = 22269.561064 eV Total energy + Delta-G solvation = -4180.277518 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.061 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.14538 -45.53012 -42.78102 -41.10595 -35.93226 -35.73805 -35.35271 -34.92812 -33.21213 -31.98672 -31.73461 -28.40955 -27.28026 -26.43932 -26.01408 -24.53444 -23.43356 -23.21380 -22.10060 -20.37226 -20.16631 -19.48696 -18.59628 -18.43832 -18.20863 -17.52702 -17.10326 -16.84866 -16.73141 -16.21511 -15.71704 -15.50412 -15.11356 -15.00861 -14.86659 -14.65784 -14.26193 -14.14965 -13.89612 -13.51629 -13.41675 -13.07024 -12.91992 -12.69633 -12.40768 -12.37961 -12.22157 -11.86346 -11.49872 -11.41778 -11.18977 -10.80988 -10.60534 -10.47662 -10.31143 -10.19143 -9.47412 -8.67257 -6.85012 -0.86320 -0.11482 0.06500 0.09501 0.62978 0.98491 1.08855 1.34758 1.56676 1.66640 1.96835 2.22202 2.23481 2.41551 2.42517 2.45275 2.67405 3.08487 3.10365 3.33794 3.61896 3.65861 3.93393 4.03661 4.28717 4.35185 4.46616 4.48355 4.52307 4.60151 4.74369 4.82147 5.22912 5.27585 5.39081 5.57277 5.75475 6.03658 6.41596 6.56644 6.60526 7.04503 7.94428 8.26179 Molecular weight = 348.06amu Principal moments of inertia in cm(-1) A = 0.013132 B = 0.003315 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.740043 B = 8443.229985 C =10550.122113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.516 5.516 3 C 0.327 3.673 4 C -0.505 4.505 5 H 0.084 0.916 6 C 0.042 3.958 7 N -0.824 5.824 8 Si 1.145 2.855 9 H -0.300 1.300 10 H -0.275 1.275 11 H -0.294 1.294 12 N -0.450 5.450 13 N -0.226 5.226 14 C 0.030 3.970 15 S 0.207 5.793 16 C 0.062 3.938 17 N -0.429 5.429 18 C 0.146 3.854 19 C -0.043 4.043 20 C 0.216 3.784 21 N -0.282 5.282 22 N -0.049 5.049 23 N -0.196 5.196 24 H 0.496 0.504 25 N -0.289 5.289 26 C -0.040 4.040 27 C 0.070 3.930 28 F -0.113 7.113 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.286 0.714 33 H 0.178 0.822 34 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.509 -21.399 -0.017 22.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.217 5.217 3 C 0.082 3.918 4 C -0.546 4.546 5 H 0.102 0.898 6 C -0.178 4.178 7 N -0.449 5.449 8 Si 0.975 3.025 9 H -0.229 1.229 10 H -0.202 1.202 11 H -0.222 1.222 12 N -0.301 5.301 13 N -0.068 5.068 14 C -0.344 4.344 15 S 0.448 5.552 16 C -0.189 4.189 17 N -0.138 5.138 18 C -0.019 4.019 19 C -0.053 4.053 20 C -0.065 4.065 21 N -0.154 5.154 22 N -0.044 5.044 23 N -0.047 5.047 24 H 0.356 0.644 25 N -0.141 5.141 26 C -0.069 4.069 27 C 0.040 3.960 28 F -0.092 7.092 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.195 0.805 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 7.440 -20.718 -0.136 22.013 hybrid contribution -1.857 0.031 0.192 1.867 sum 5.583 -20.687 0.056 21.427 Atomic orbital electron populations 1.21949 0.74771 1.04725 1.03860 1.46196 1.08231 1.03928 1.63318 1.21808 0.86016 0.89772 0.94251 1.19400 0.97414 0.87609 1.50191 0.89826 1.27760 1.09730 0.91491 0.88773 1.70679 1.21873 1.18493 1.33826 0.82201 0.69637 0.71660 0.79048 1.22945 1.20178 1.22174 1.74041 1.16883 1.03188 1.35980 1.74752 1.15697 1.02924 1.13388 1.26396 0.91023 0.95448 1.21515 1.83216 0.99324 0.85448 1.87163 1.23751 1.00202 0.91971 1.03016 1.68915 0.97599 1.35991 1.11334 1.23239 0.95351 0.91615 0.91683 1.18036 0.87546 0.93067 1.06638 1.23113 0.92917 0.87361 1.03068 1.76076 1.04190 1.16661 1.18499 1.78857 1.02819 1.07968 1.14753 1.47807 1.12677 1.00609 1.43595 0.64420 1.74987 0.96838 1.21067 1.21228 1.21575 0.87867 1.02885 0.94621 1.17749 0.84024 0.86787 1.07389 1.91561 1.48361 1.75417 1.93855 0.90185 0.88267 0.89763 0.90265 0.80542 0.79301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.86 10.89 127.77 1.39 4.26 16 2 N -0.52 -23.01 3.26 -543.64 -1.77 -24.78 16 3 C 0.33 17.37 7.27 133.24 0.97 18.34 16 4 C -0.51 -27.12 9.49 23.08 0.22 -26.90 16 5 H 0.08 4.33 7.46 -2.91 -0.02 4.31 16 6 C 0.04 2.31 5.52 85.28 0.47 2.78 16 7 N -0.82 -44.29 13.66 21.85 0.30 -43.99 16 8 Si 1.15 58.06 25.89 68.60 1.78 59.83 16 9 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 10 H -0.28 -14.54 6.76 99.48 0.67 -13.87 16 11 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16 12 N -0.45 -25.11 7.51 -55.04 -0.41 -25.52 16 13 N -0.23 -11.52 9.33 -56.17 -0.52 -12.05 16 14 C 0.03 1.31 8.04 179.18 1.44 2.75 16 15 S 0.21 6.64 21.59 -56.49 -1.22 5.42 16 16 C 0.06 1.96 6.96 84.88 0.59 2.55 16 17 N -0.43 -15.33 7.11 -191.20 -1.36 -16.69 16 18 C 0.15 4.18 10.86 84.95 0.92 5.10 16 19 C -0.04 -1.01 5.89 -19.92 -0.12 -1.12 16 20 C 0.22 4.58 7.95 137.34 1.09 5.68 16 21 N -0.28 -5.82 12.30 -52.20 -0.64 -6.46 16 22 N -0.05 -0.83 13.47 37.02 0.50 -0.33 16 23 N -0.20 -2.38 7.90 37.02 0.29 -2.09 16 24 H 0.50 1.09 8.96 -347.52 -3.12 -2.03 16 25 N -0.29 -5.37 12.10 -52.15 -0.63 -6.00 16 26 C -0.04 -0.83 9.81 22.69 0.22 -0.61 16 27 C 0.07 1.73 7.30 22.57 0.16 1.90 16 28 F -0.11 -2.58 16.77 44.97 0.75 -1.83 16 29 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.10 2.54 7.85 -2.38 -0.02 2.52 16 31 H 0.08 2.67 7.48 -2.38 -0.02 2.65 16 32 H 0.29 14.62 8.72 -92.71 -0.81 13.81 16 33 H 0.18 4.78 7.88 -2.91 -0.02 4.76 16 34 H 0.19 2.88 7.96 -2.91 -0.02 2.86 16 Total: -1.00 -73.23 326.32 2.46 -70.76 By element: Atomic # 1 Polarization: -9.04 SS G_CDS: -1.96 Total: -11.00 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 7.37 Total: 14.72 kcal Atomic # 7 Polarization: -133.65 SS G_CDS: -4.25 Total: -137.90 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.75 Total: -1.83 kcal Atomic # 14 Polarization: 58.06 SS G_CDS: 1.78 Total: 59.83 kcal Atomic # 16 Polarization: 6.64 SS G_CDS: -1.22 Total: 5.42 kcal Total: -73.23 2.46 -70.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581752543.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.406 kcal (2) G-P(sol) polarization free energy of solvation -73.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 173.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds