Wall clock time and date at job start Wed Apr 1 2020 05:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47416 * 246.60351 * 3 2 1 5 5 C 1.37095 * 119.99781 * 265.61675 * 4 3 2 6 6 H 1.08002 * 119.99892 * 201.11829 * 5 4 3 7 7 C 1.38948 * 120.00236 * 21.12134 * 5 4 3 8 8 N 1.31414 * 120.00269 * 9.73387 * 7 5 4 9 9 Si 1.86802 * 120.00208 * 189.73764 * 7 5 4 10 10 H 1.48506 * 109.47085 * 89.99858 * 9 7 5 11 11 H 1.48496 * 109.47433 * 209.99602 * 9 7 5 12 12 H 1.48496 * 109.46937 * 329.99963 * 9 7 5 13 13 C 1.34774 * 120.00137 * 85.61608 * 4 3 2 14 14 O 1.21296 * 119.99971 * 180.02562 * 13 4 3 15 15 C 1.50706 * 119.99998 * 0.02562 * 13 4 3 16 16 F 1.39894 * 109.46922 * 78.37863 * 15 13 4 17 17 F 1.39903 * 109.46764 * 318.37897 * 15 13 4 18 18 C 1.50706 * 109.46925 * 198.37992 * 15 13 4 19 19 C 1.38045 * 120.05627 * 111.58442 * 18 15 13 20 20 C 1.38297 * 120.11662 * 180.02562 * 19 18 15 21 21 C 1.38344 * 120.23382 * 0.02562 * 20 19 18 22 22 C 1.38010 * 120.11729 * 359.97438 * 21 20 19 23 23 C 1.39274 * 120.05870 * 291.57873 * 18 15 13 24 24 C 1.48462 * 120.11733 * 359.96073 * 23 18 15 25 25 N 1.34048 * 126.67646 * 359.70702 * 24 23 18 26 26 N 1.28983 * 107.27099 * 179.83050 * 25 24 23 27 27 N 1.28733 * 108.94209 * 0.43928 * 26 25 24 28 28 H 0.97001 * 125.34252 * 179.74498 * 27 26 25 29 29 N 1.28871 * 109.31914 * 359.71894 * 27 26 25 30 30 H 1.08997 * 109.46885 * 126.59800 * 3 2 1 31 31 H 1.09006 * 109.46658 * 6.60292 * 3 2 1 32 32 H 0.96988 * 120.00335 * 180.02562 * 8 7 5 33 33 H 1.07994 * 119.94904 * 0.04197 * 19 18 15 34 34 H 1.07998 * 119.88592 * 180.27407 * 20 19 18 35 35 H 1.08000 * 119.93795 * 179.97438 * 21 20 19 36 36 H 1.07995 * 120.05268 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0961 0.5493 1.2676 5 6 3.4096 1.8806 1.3628 6 1 4.0704 2.2251 2.1445 7 6 2.8771 2.7865 0.4538 8 7 1.9297 2.4068 -0.3740 9 14 3.5080 4.5442 0.4082 10 1 4.6447 4.6376 -0.5428 11 1 2.4175 5.4502 -0.0334 12 1 3.9633 4.9419 1.7645 13 6 3.2370 -0.2546 2.3401 14 8 3.6408 0.1998 3.3898 15 6 2.8930 -1.7181 2.2353 16 9 3.9342 -2.3970 1.5934 17 9 1.7137 -1.8681 1.4976 18 6 2.6976 -2.2884 3.6165 19 6 1.4418 -2.6867 4.0287 20 6 1.2609 -3.2097 5.2962 21 6 2.3361 -3.3361 6.1575 22 6 3.5958 -2.9409 5.7554 23 6 3.7836 -2.4145 4.4792 24 6 5.1366 -1.9886 4.0409 25 7 5.4664 -1.4726 2.8485 26 7 6.7338 -1.2344 2.8716 27 7 7.2044 -1.5868 4.0168 28 1 8.1329 -1.5149 4.2882 29 7 6.2484 -2.0498 4.7465 30 1 2.9710 0.6135 -0.8250 31 1 2.9717 -1.0201 -0.1182 32 1 1.5583 3.0391 -1.0088 33 1 0.5990 -2.5901 3.3603 34 1 0.2776 -3.5243 5.6132 35 1 2.1894 -3.7448 7.1464 36 1 4.4344 -3.0404 6.4285 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581858310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:45 Heat of formation + Delta-G solvation = 108.889968 kcal Electronic energy + Delta-G solvation = -32025.729426 eV Core-core repulsion = 27379.884511 eV Total energy + Delta-G solvation = -4645.844916 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.089 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.67481 -46.58070 -44.04956 -39.34698 -38.43259 -35.82474 -34.33133 -33.98936 -33.31244 -31.85873 -31.79659 -30.42513 -27.53970 -27.05808 -24.73852 -24.63912 -23.83402 -21.90609 -21.46561 -19.89787 -18.90480 -17.97540 -17.64570 -17.11107 -16.94248 -16.73936 -16.24108 -16.03056 -15.29334 -14.72464 -14.71838 -14.18601 -14.02913 -13.86106 -13.60009 -13.37503 -13.11552 -13.03376 -12.83254 -12.76517 -12.39227 -12.12841 -11.88983 -11.73309 -11.53222 -11.34816 -11.22787 -11.16933 -10.94122 -10.82760 -10.68052 -10.59421 -10.45928 -10.44400 -10.32632 -9.29465 -9.04559 -8.67196 -8.58212 -8.10115 -6.52286 -4.10950 0.79590 1.26303 1.56639 2.52581 2.68032 3.03995 3.18316 3.22899 3.38618 3.60398 3.75537 3.91216 4.01147 4.09356 4.27561 4.41434 4.50791 4.74725 4.89279 4.94531 5.01869 5.21198 5.29474 5.43163 5.51726 5.54830 5.68882 5.73520 5.87577 5.97926 6.19421 6.32798 6.40599 6.44995 6.65087 6.68466 6.81969 7.39531 7.75591 8.18238 8.53165 8.86621 8.94400 9.07277 9.54736 10.51026 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.005390 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.111746 B = 5193.366840 C = 6441.108893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.261 3.739 3 C 0.217 3.783 4 N -0.415 5.415 5 C -0.302 4.302 6 H 0.108 0.892 7 C 0.033 3.967 8 N -0.878 5.878 9 Si 0.938 3.062 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.444 3.556 14 O -0.543 6.543 15 C 0.328 3.672 16 F -0.168 7.168 17 F -0.187 7.187 18 C -0.095 4.095 19 C -0.088 4.088 20 C -0.108 4.108 21 C -0.107 4.107 22 C -0.090 4.090 23 C 0.043 3.957 24 C 0.225 3.775 25 N -0.227 5.227 26 N -0.049 5.049 27 N -0.238 5.238 28 H 0.470 0.530 29 N -0.301 5.301 30 H 0.134 0.866 31 H 0.081 0.919 32 H 0.277 0.723 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.775 -11.404 7.923 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C -0.057 4.057 3 C 0.090 3.910 4 N -0.134 5.134 5 C -0.429 4.429 6 H 0.126 0.874 7 C -0.171 4.171 8 N -0.517 5.517 9 Si 0.764 3.236 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.228 3.772 14 O -0.424 6.424 15 C 0.288 3.712 16 F -0.148 7.148 17 F -0.168 7.168 18 C -0.099 4.099 19 C -0.106 4.106 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.111 4.111 23 C 0.040 3.960 24 C -0.055 4.055 25 N -0.100 5.100 26 N -0.045 5.045 27 N -0.083 5.083 28 H 0.323 0.677 29 N -0.153 5.153 30 H 0.151 0.849 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.654 -10.809 7.795 14.477 hybrid contribution 0.839 0.845 0.107 1.196 sum 6.493 -9.964 7.903 14.279 Atomic orbital electron populations 1.80831 1.13416 1.12971 1.08668 1.28852 0.94998 0.89364 0.92449 1.18905 0.82200 0.98985 0.90883 1.43448 1.54647 1.08763 1.06503 1.19762 1.26776 0.80416 1.15955 0.87390 1.25407 0.94769 1.00683 0.96209 1.69730 1.23859 1.36655 1.21487 0.85734 0.78263 0.80660 0.78967 1.19925 1.20805 1.19349 1.19614 0.86744 0.85631 0.85214 1.90560 1.50000 1.73911 1.27941 1.19860 0.73422 0.93254 0.84702 1.93076 1.57516 1.81449 1.82785 1.93018 1.48531 1.96582 1.78637 1.19878 0.94506 1.00873 0.94597 1.20991 0.95903 0.96728 0.96966 1.21227 0.99360 0.98844 0.93225 1.21147 0.92152 0.99398 0.99854 1.21091 0.98229 0.97693 0.94037 1.16813 0.86152 0.98956 0.94112 1.23280 0.93475 1.00119 0.88590 1.76422 1.02118 1.12716 1.18738 1.78958 1.05518 1.14977 1.05003 1.47608 1.12224 1.39997 1.08421 0.67697 1.74719 0.96754 1.20782 1.23048 0.84871 0.90112 0.91251 0.84248 0.84985 0.84985 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.96 18.54 42.15 0.78 -11.18 16 2 C 0.26 6.22 10.96 -20.76 -0.23 5.99 16 3 C 0.22 4.82 4.75 -6.83 -0.03 4.79 16 4 N -0.42 -10.26 2.59 -117.93 -0.31 -10.56 16 5 C -0.30 -7.89 9.33 -14.94 -0.14 -8.03 16 6 H 0.11 2.95 7.38 -52.49 -0.39 2.56 16 7 C 0.03 0.83 5.13 -17.47 -0.09 0.74 16 8 N -0.88 -22.27 8.90 55.50 0.49 -21.77 16 9 Si 0.94 19.91 29.56 -169.99 -5.03 14.88 16 10 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 13 C 0.44 10.64 5.55 -10.98 -0.06 10.58 16 14 O -0.54 -14.08 13.21 5.54 0.07 -14.01 16 15 C 0.33 6.76 1.26 -29.03 -0.04 6.72 16 16 F -0.17 -3.35 13.15 2.25 0.03 -3.32 16 17 F -0.19 -3.81 11.42 2.25 0.03 -3.78 16 18 C -0.10 -1.74 4.73 -104.30 -0.49 -2.24 16 19 C -0.09 -1.36 9.42 -39.63 -0.37 -1.73 16 20 C -0.11 -1.29 10.04 -39.52 -0.40 -1.69 16 21 C -0.11 -1.21 10.04 -39.63 -0.40 -1.60 16 22 C -0.09 -1.22 9.70 -39.26 -0.38 -1.60 16 23 C 0.04 0.74 5.30 -104.90 -0.56 0.19 16 24 C 0.23 4.11 6.51 -156.30 -1.02 3.09 16 25 N -0.23 -4.52 6.15 32.16 0.20 -4.32 16 26 N -0.05 -0.83 13.47 60.35 0.81 -0.02 16 27 N -0.24 -3.10 7.90 60.35 0.48 -2.63 16 28 H 0.47 3.46 8.96 -340.37 -3.05 0.41 16 29 N -0.30 -4.57 12.08 32.17 0.39 -4.18 16 30 H 0.13 2.95 6.44 -51.93 -0.33 2.62 16 31 H 0.08 1.58 6.10 -51.93 -0.32 1.26 16 32 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.14 2.09 7.19 -52.49 -0.38 1.71 16 34 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.14 1.56 7.88 -52.49 -0.41 1.15 16 LS Contribution 319.38 15.07 4.81 4.81 Total: -1.00 -33.35 319.38 -6.30 -39.65 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.86 Total: 1.22 kcal Atomic # 6 Polarization: 19.42 SS G_CDS: -4.20 Total: 15.21 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 2.85 Total: -54.67 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.07 Total: -14.01 kcal Atomic # 9 Polarization: -7.16 SS G_CDS: 0.06 Total: -7.10 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.03 Total: 14.88 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.35 -6.30 -39.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581858310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.538 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds