Wall clock time and date at job start Wed Apr 1 2020 05:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86807 * 119.99976 * 2 1 4 4 H 1.48497 * 109.46998 * 264.68621 * 3 2 1 5 5 H 1.48504 * 109.46767 * 24.68692 * 3 2 1 6 6 H 1.48502 * 109.47048 * 144.68590 * 3 2 1 7 7 C 1.37871 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00170 * 4.80179 * 7 2 1 9 9 C 1.50699 * 120.00439 * 184.80111 * 7 2 1 10 10 H 1.09007 * 109.47150 * 334.95454 * 9 7 2 11 11 O 1.45193 * 109.47678 * 214.95105 * 9 7 2 12 12 C 1.34730 * 117.00484 * 149.99687 * 11 9 7 13 13 O 1.21493 * 119.99789 * 0.02562 * 12 11 9 14 14 C 1.47617 * 120.00447 * 180.02562 * 12 11 9 15 15 C 1.39769 * 120.02986 * 180.02562 * 14 12 11 16 16 C 1.37645 * 119.99840 * 179.97438 * 15 14 12 17 17 C 1.39482 * 120.04399 * 359.97438 * 16 15 14 18 18 C 1.48345 * 119.96975 * 179.97438 * 17 16 15 19 19 N 1.34091 * 126.68115 * 359.69161 * 18 17 16 20 20 N 1.28988 * 107.25645 * 179.83361 * 19 18 17 21 21 N 1.28716 * 108.96445 * 0.43101 * 20 19 18 22 22 H 0.96997 * 125.34169 * 179.74684 * 21 20 19 23 23 N 1.28879 * 109.33094 * 359.72517 * 21 20 19 24 24 C 1.39555 * 120.05565 * 0.02562 * 17 16 15 25 25 Cl 1.73599 * 119.99928 * 179.97438 * 24 17 16 26 26 C 1.37823 * 120.00543 * 359.69934 * 24 17 16 27 27 C 1.53000 * 109.46979 * 94.95182 * 9 7 2 28 28 C 1.53002 * 117.51964 * 111.89470 * 27 9 7 29 29 C 1.53002 * 117.49795 * 180.52432 * 27 9 7 30 30 H 0.97003 * 120.00816 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.00209 * 0.02562 * 15 14 12 32 32 H 1.07995 * 119.97636 * 179.97438 * 16 15 14 33 33 H 1.07997 * 120.02411 * 180.29644 * 26 24 17 34 34 H 1.09004 * 115.54850 * 326.18632 * 27 9 7 35 35 H 1.09003 * 117.49500 * 214.97082 * 28 27 9 36 36 H 1.08998 * 117.49505 * 359.97438 * 28 27 9 37 37 H 1.09001 * 117.49861 * 359.97117 * 29 27 9 38 38 H 1.09007 * 117.49961 * 144.99500 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6089 1.9816 -1.3940 5 1 1.3948 2.6825 0.5848 6 1 3.4860 1.4752 0.8093 7 6 2.0045 -1.1940 -0.0005 8 1 1.4674 -2.1277 -0.0792 9 6 3.5075 -1.1963 0.1087 10 1 3.9000 -0.2483 -0.2591 11 8 4.0489 -2.2849 -0.6851 12 6 5.2748 -2.1053 -1.2143 13 8 5.8752 -1.0676 -1.0176 14 6 5.8884 -3.1692 -2.0333 15 6 7.1603 -2.9836 -2.5821 16 6 7.7321 -3.9763 -3.3452 17 6 7.0432 -5.1680 -3.5709 18 6 7.6607 -6.2365 -4.3940 19 7 8.8630 -6.1973 -4.9865 20 7 9.0243 -7.3207 -5.5995 21 7 7.9772 -8.0480 -5.4223 22 1 7.8451 -8.9387 -5.7830 23 7 7.1318 -7.4075 -4.6901 24 6 5.7731 -5.3554 -3.0238 25 17 4.9167 -6.8388 -3.3062 26 6 5.2009 -4.3652 -2.2547 27 6 3.9121 -1.3823 1.5724 28 6 4.5968 -2.6960 1.9552 29 6 5.4076 -1.3998 1.8952 30 1 -0.4851 0.8400 0.0004 31 1 7.6949 -2.0617 -2.4069 32 1 8.7147 -3.8324 -3.7695 33 1 4.2200 -4.5118 -1.8273 34 1 3.2442 -0.9305 2.3059 35 1 4.3793 -3.1084 2.9405 36 1 4.7587 -3.4282 1.1642 37 1 6.1032 -1.2793 1.0647 38 1 5.7236 -0.9596 2.8410 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592675997.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:45 Heat of formation + Delta-G solvation = 92.369048 kcal Electronic energy + Delta-G solvation = -27187.545317 eV Core-core repulsion = 23060.487930 eV Total energy + Delta-G solvation = -4127.057387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.75155 -40.37381 -39.10781 -36.85962 -36.44679 -35.00734 -34.72177 -33.91299 -32.84578 -31.37831 -30.88305 -28.76905 -25.75874 -25.03935 -23.27645 -22.75762 -22.52060 -21.76424 -20.91204 -19.57522 -19.27787 -18.09311 -17.44754 -17.04255 -16.69408 -16.32925 -16.17175 -15.31782 -15.13518 -14.51473 -14.38761 -14.06132 -13.93999 -13.84827 -13.28213 -13.00407 -12.80281 -12.41621 -12.05941 -11.83627 -11.72473 -11.70945 -11.58198 -11.56407 -11.43295 -11.23248 -11.02692 -10.81758 -10.77710 -10.27153 -10.14356 -9.85981 -9.83355 -9.31204 -9.18675 -8.95199 -8.85191 -8.74454 -6.32565 -4.37547 0.03606 0.83392 0.93378 1.81825 1.85968 1.95392 2.78072 3.14586 3.23792 3.27374 3.32058 3.34234 3.59585 3.80432 4.22628 4.51999 4.54606 4.77100 4.89509 4.91964 4.98293 5.07184 5.15264 5.32238 5.55657 5.60735 5.70470 5.71589 5.75509 5.88832 6.05487 6.08368 6.20502 6.30013 6.33415 6.43991 6.72614 6.75365 6.92436 7.19231 7.41971 7.82046 8.12267 8.46119 8.78134 9.25528 10.78167 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.002757 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.954873 B =10152.416722 C =10530.954354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.085 3.915 3 Si 0.864 3.136 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.256 1.256 7 C -0.515 4.515 8 H 0.088 0.912 9 C 0.217 3.783 10 H 0.055 0.945 11 O -0.336 6.336 12 C 0.494 3.506 13 O -0.508 6.508 14 C -0.081 4.081 15 C -0.059 4.059 16 C -0.078 4.078 17 C 0.011 3.989 18 C 0.210 3.790 19 N -0.262 5.262 20 N -0.051 5.051 21 N -0.229 5.229 22 H 0.475 0.525 23 N -0.267 5.267 24 C -0.019 4.019 25 Cl -0.033 7.033 26 C -0.056 4.056 27 C -0.142 4.142 28 C -0.177 4.177 29 C -0.209 4.209 30 H 0.271 0.729 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.162 0.838 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.312 -14.510 -8.154 22.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.120 4.120 3 Si 0.690 3.310 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.180 1.180 7 C -0.552 4.552 8 H 0.106 0.894 9 C 0.164 3.836 10 H 0.073 0.927 11 O -0.251 6.251 12 C 0.338 3.662 13 O -0.399 6.399 14 C -0.083 4.083 15 C -0.077 4.077 16 C -0.098 4.098 17 C 0.007 3.993 18 C -0.069 4.069 19 N -0.135 5.135 20 N -0.046 5.046 21 N -0.075 5.075 22 H 0.330 0.670 23 N -0.118 5.118 24 C -0.048 4.048 25 Cl -0.004 7.004 26 C -0.075 4.075 27 C -0.160 4.160 28 C -0.214 4.214 29 C -0.246 4.246 30 H 0.081 0.919 31 H 0.171 0.829 32 H 0.170 0.830 33 H 0.180 0.820 34 H 0.130 0.870 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.649 -14.487 -8.464 22.943 hybrid contribution -0.186 0.434 0.081 0.479 sum 15.463 -14.052 -8.383 22.513 Atomic orbital electron populations 1.69840 1.06149 1.27741 1.47679 1.24885 0.94827 0.98795 0.93525 0.87013 0.80723 0.83498 0.79771 1.19476 1.20694 1.18022 1.20676 0.86782 0.95666 1.52054 0.89435 1.20538 0.94196 0.84671 0.84201 0.92716 1.86743 1.28787 1.48490 1.61086 1.20953 0.81690 0.85705 0.77873 1.90767 1.63089 1.27979 1.58112 1.19567 0.95252 0.93721 0.99798 1.21344 0.93176 0.99542 0.93622 1.21076 1.00511 0.90643 0.97588 1.17281 0.92531 0.91798 0.97738 1.23464 0.90517 0.92440 1.00496 1.76094 1.15457 1.12127 1.09855 1.78893 1.10362 0.98285 1.17057 1.47898 1.08930 1.18065 1.32572 0.67024 1.75453 1.18365 1.06969 1.11051 1.20787 0.92718 0.90580 1.00714 1.98405 1.75878 1.31440 1.94662 1.21456 1.00930 0.90352 0.94720 1.23244 0.92915 1.00402 0.99482 1.22778 1.05293 0.91488 1.01869 1.23254 0.96271 1.02183 1.02873 0.91865 0.82936 0.82968 0.82049 0.86978 0.89712 0.89174 0.88297 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.37 13.96 55.43 0.77 -24.60 16 2 C 0.08 2.33 5.47 -17.83 -0.10 2.24 16 3 Si 0.86 20.70 26.98 -169.99 -4.59 16.12 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.26 -5.99 6.83 56.52 0.39 -5.60 16 7 C -0.51 -13.95 9.22 -34.44 -0.32 -14.27 16 8 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 9 C 0.22 5.14 2.07 -27.88 -0.06 5.08 16 10 H 0.06 1.37 4.32 -51.92 -0.22 1.15 16 11 O -0.34 -7.14 7.63 -40.57 -0.31 -7.45 16 12 C 0.49 9.28 6.83 34.56 0.24 9.51 16 13 O -0.51 -10.41 13.41 -19.26 -0.26 -10.67 16 14 C -0.08 -1.19 5.88 -104.95 -0.62 -1.80 16 15 C -0.06 -0.70 9.58 -39.23 -0.38 -1.08 16 16 C -0.08 -0.82 9.68 -39.33 -0.38 -1.20 16 17 C 0.01 0.12 5.88 -104.78 -0.62 -0.49 16 18 C 0.21 2.37 7.86 -156.27 -1.23 1.14 16 19 N -0.26 -2.94 12.22 32.14 0.39 -2.55 16 20 N -0.05 -0.48 13.47 60.35 0.81 0.34 16 21 N -0.23 -1.59 7.90 60.35 0.48 -1.12 16 22 H 0.48 1.01 8.96 -340.36 -3.05 -2.04 16 23 N -0.27 -2.63 9.74 32.16 0.31 -2.32 16 24 C -0.02 -0.23 6.33 -39.24 -0.25 -0.48 16 25 Cl -0.03 -0.38 26.17 -51.86 -1.36 -1.74 16 26 C -0.06 -0.75 9.38 -39.18 -0.37 -1.12 16 27 C -0.14 -3.01 5.70 -90.62 -0.52 -3.53 16 28 C -0.18 -3.21 9.79 -26.73 -0.26 -3.47 16 29 C -0.21 -3.87 9.85 -26.73 -0.26 -4.14 16 30 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 31 H 0.15 1.69 7.64 -52.49 -0.40 1.29 16 32 H 0.15 1.30 7.87 -52.49 -0.41 0.89 16 33 H 0.16 2.22 7.60 -52.49 -0.40 1.82 16 34 H 0.11 2.43 8.11 -51.93 -0.42 2.01 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.09 1.62 6.88 -51.93 -0.36 1.26 16 37 H 0.10 1.91 5.38 -51.93 -0.28 1.63 16 38 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -31.61 345.45 -9.61 -41.22 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.96 Total: 1.18 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -5.11 Total: -13.63 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: 2.77 Total: -30.25 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.57 Total: -18.12 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.59 Total: 16.12 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.36 Total: -1.74 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.61 -9.61 -41.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592675997.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.593 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds