Wall clock time and date at job start Wed Apr 1 2020 05:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86807 * 119.99976 * 2 1 4 4 H 1.48497 * 109.46998 * 264.68621 * 3 2 1 5 5 H 1.48504 * 109.46767 * 24.68692 * 3 2 1 6 6 H 1.48502 * 109.47048 * 144.68590 * 3 2 1 7 7 C 1.37871 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00170 * 4.80179 * 7 2 1 9 9 C 1.50699 * 120.00439 * 184.80111 * 7 2 1 10 10 H 1.09007 * 109.47150 * 334.95454 * 9 7 2 11 11 O 1.45193 * 109.47678 * 214.95105 * 9 7 2 12 12 C 1.34730 * 117.00484 * 149.99687 * 11 9 7 13 13 O 1.21493 * 119.99789 * 0.02562 * 12 11 9 14 14 C 1.47617 * 120.00447 * 180.02562 * 12 11 9 15 15 C 1.39769 * 120.02986 * 180.02562 * 14 12 11 16 16 C 1.37645 * 119.99840 * 179.97438 * 15 14 12 17 17 C 1.39482 * 120.04399 * 359.97438 * 16 15 14 18 18 C 1.48345 * 119.96975 * 179.97438 * 17 16 15 19 19 N 1.34091 * 126.68115 * 359.69161 * 18 17 16 20 20 N 1.28988 * 107.25645 * 179.83361 * 19 18 17 21 21 N 1.28716 * 108.96445 * 0.43101 * 20 19 18 22 22 H 0.96997 * 125.34169 * 179.74684 * 21 20 19 23 23 N 1.28879 * 109.33094 * 359.72517 * 21 20 19 24 24 C 1.39555 * 120.05565 * 0.02562 * 17 16 15 25 25 Cl 1.73599 * 119.99928 * 179.97438 * 24 17 16 26 26 C 1.37823 * 120.00543 * 359.69934 * 24 17 16 27 27 C 1.53000 * 109.46979 * 94.95182 * 9 7 2 28 28 C 1.53002 * 117.51964 * 111.89470 * 27 9 7 29 29 C 1.53002 * 117.49795 * 180.52432 * 27 9 7 30 30 H 0.97003 * 120.00816 * 359.97438 * 1 2 3 31 31 H 1.08001 * 120.00209 * 0.02562 * 15 14 12 32 32 H 1.07995 * 119.97636 * 179.97438 * 16 15 14 33 33 H 1.07997 * 120.02411 * 180.29644 * 26 24 17 34 34 H 1.09004 * 115.54850 * 326.18632 * 27 9 7 35 35 H 1.09003 * 117.49500 * 214.97082 * 28 27 9 36 36 H 1.08998 * 117.49505 * 359.97438 * 28 27 9 37 37 H 1.09001 * 117.49861 * 359.97117 * 29 27 9 38 38 H 1.09007 * 117.49961 * 144.99500 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6089 1.9816 -1.3940 5 1 1.3948 2.6825 0.5848 6 1 3.4860 1.4752 0.8093 7 6 2.0045 -1.1940 -0.0005 8 1 1.4674 -2.1277 -0.0792 9 6 3.5075 -1.1963 0.1087 10 1 3.9000 -0.2483 -0.2591 11 8 4.0489 -2.2849 -0.6851 12 6 5.2748 -2.1053 -1.2143 13 8 5.8752 -1.0676 -1.0176 14 6 5.8884 -3.1692 -2.0333 15 6 7.1603 -2.9836 -2.5821 16 6 7.7321 -3.9763 -3.3452 17 6 7.0432 -5.1680 -3.5709 18 6 7.6607 -6.2365 -4.3940 19 7 8.8630 -6.1973 -4.9865 20 7 9.0243 -7.3207 -5.5995 21 7 7.9772 -8.0480 -5.4223 22 1 7.8451 -8.9387 -5.7830 23 7 7.1318 -7.4075 -4.6901 24 6 5.7731 -5.3554 -3.0238 25 17 4.9167 -6.8388 -3.3062 26 6 5.2009 -4.3652 -2.2547 27 6 3.9121 -1.3823 1.5724 28 6 4.5968 -2.6960 1.9552 29 6 5.4076 -1.3998 1.8952 30 1 -0.4851 0.8400 0.0004 31 1 7.6949 -2.0617 -2.4069 32 1 8.7147 -3.8324 -3.7695 33 1 4.2200 -4.5118 -1.8273 34 1 3.2442 -0.9305 2.3059 35 1 4.3793 -3.1084 2.9405 36 1 4.7587 -3.4282 1.1642 37 1 6.1032 -1.2793 1.0647 38 1 5.7236 -0.9596 2.8410 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592675997.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:45 Heat of formation + Delta-G solvation = 73.972021 kcal Electronic energy + Delta-G solvation = -27188.343072 eV Core-core repulsion = 23060.487930 eV Total energy + Delta-G solvation = -4127.855142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.078 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.50273 -41.78819 -40.28277 -38.33003 -37.47846 -36.60106 -35.51366 -34.92572 -34.73603 -32.37964 -31.87283 -30.62887 -26.86829 -25.82065 -25.00051 -23.75512 -23.66733 -23.21447 -22.17236 -20.94023 -20.27376 -19.63130 -18.67243 -18.18885 -18.13699 -17.81049 -17.51908 -16.62399 -16.27851 -15.93133 -15.68617 -15.22516 -15.06085 -14.86224 -14.77154 -14.59914 -14.00222 -13.82359 -13.40999 -13.31997 -13.12555 -12.93212 -12.69686 -12.64726 -12.48774 -12.41980 -12.32123 -12.08820 -12.03016 -11.94477 -11.75557 -11.51335 -11.44559 -11.05026 -10.76601 -10.57750 -10.14836 -9.91715 -8.44623 -6.53900 -0.97318 -0.03182 0.09812 0.84370 0.92411 1.27751 1.31710 1.37910 1.42865 1.57670 1.78759 2.22335 2.46379 2.48930 2.87245 2.97937 3.04971 3.52446 3.71890 3.90540 3.98600 4.00837 4.07524 4.10771 4.12773 4.15321 4.38201 4.52719 4.66797 4.75970 4.79057 4.84636 4.95934 5.06707 5.11073 5.21818 5.29403 5.36448 5.46616 5.58299 5.58867 6.15100 6.55251 6.81653 7.06091 7.13295 8.70354 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.002757 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.954873 B =10152.416722 C =10530.954354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.037 3.963 3 Si 0.923 3.077 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.247 1.247 7 C -0.523 4.523 8 H 0.049 0.951 9 C 0.223 3.777 10 H 0.042 0.958 11 O -0.347 6.347 12 C 0.493 3.507 13 O -0.527 6.527 14 C -0.100 4.100 15 C -0.046 4.046 16 C -0.064 4.064 17 C 0.019 3.981 18 C 0.196 3.804 19 N -0.277 5.277 20 N -0.052 5.052 21 N -0.200 5.200 22 H 0.495 0.505 23 N -0.271 5.271 24 C -0.023 4.023 25 Cl -0.028 7.028 26 C -0.057 4.057 27 C -0.176 4.176 28 C -0.161 4.161 29 C -0.190 4.190 30 H 0.275 0.725 31 H 0.164 0.836 32 H 0.179 0.821 33 H 0.151 0.849 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.157 -15.331 -8.659 25.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.164 4.164 3 Si 0.746 3.254 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.170 1.170 7 C -0.560 4.560 8 H 0.068 0.932 9 C 0.170 3.830 10 H 0.059 0.941 11 O -0.263 6.263 12 C 0.339 3.661 13 O -0.419 6.419 14 C -0.103 4.103 15 C -0.064 4.064 16 C -0.084 4.084 17 C 0.015 3.985 18 C -0.083 4.083 19 N -0.149 5.149 20 N -0.047 5.047 21 N -0.051 5.051 22 H 0.354 0.646 23 N -0.124 5.124 24 C -0.052 4.052 25 Cl 0.001 6.999 26 C -0.076 4.076 27 C -0.194 4.194 28 C -0.197 4.197 29 C -0.226 4.226 30 H 0.085 0.915 31 H 0.182 0.818 32 H 0.196 0.804 33 H 0.169 0.831 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 18.514 -15.343 -8.982 25.668 hybrid contribution -1.009 0.436 0.107 1.104 sum 17.505 -14.907 -8.875 24.646 Atomic orbital electron populations 1.69951 1.07694 1.28838 1.49549 1.25599 0.95483 1.02081 0.93203 0.86087 0.79884 0.79576 0.79891 1.19341 1.19516 1.17039 1.20809 0.88991 0.94315 1.51895 0.93242 1.20204 0.92044 0.84770 0.86006 0.94064 1.86679 1.30624 1.47439 1.61510 1.21531 0.80529 0.86501 0.77496 1.90742 1.63210 1.29047 1.58943 1.19336 0.96575 0.93082 1.01276 1.21461 0.91882 1.00266 0.92799 1.21287 1.01127 0.89526 0.96438 1.17431 0.92024 0.92231 0.96812 1.23382 0.90905 0.92810 1.01253 1.76080 1.15528 1.12967 1.10360 1.78851 1.10757 0.98137 1.16923 1.47948 1.07721 1.18469 1.30968 0.64628 1.75410 1.18875 1.06803 1.11268 1.20736 0.93136 0.90552 1.00752 1.98404 1.75893 1.30952 1.94615 1.21314 1.00600 0.90528 0.95148 1.23012 0.95000 1.03868 0.97567 1.22875 1.03239 0.90684 1.02947 1.23270 0.93800 1.01929 1.03634 0.91517 0.81809 0.80406 0.83086 0.87881 0.87271 0.89278 0.89013 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.18 13.96 21.44 0.30 -54.88 16 2 C 0.04 2.12 5.47 84.65 0.46 2.58 16 3 Si 0.92 43.37 26.98 68.60 1.85 45.22 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.25 -11.14 6.83 99.48 0.68 -10.46 16 7 C -0.52 -29.58 9.22 25.60 0.24 -29.34 16 8 H 0.05 3.09 8.06 -2.91 -0.02 3.06 16 9 C 0.22 10.79 2.07 29.85 0.06 10.86 16 10 H 0.04 2.09 4.32 -2.38 -0.01 2.08 16 11 O -0.35 -15.11 7.63 -56.40 -0.43 -15.54 16 12 C 0.49 18.56 6.83 70.30 0.48 19.04 16 13 O -0.53 -21.38 13.41 19.86 0.27 -21.11 16 14 C -0.10 -2.88 5.88 -20.07 -0.12 -3.00 16 15 C -0.05 -1.02 9.58 22.50 0.22 -0.80 16 16 C -0.06 -1.18 9.68 22.43 0.22 -0.97 16 17 C 0.02 0.40 5.88 -19.97 -0.12 0.29 16 18 C 0.20 3.95 7.86 137.31 1.08 5.03 16 19 N -0.28 -5.51 12.22 -52.22 -0.64 -6.15 16 20 N -0.05 -0.84 13.47 37.02 0.50 -0.34 16 21 N -0.20 -2.26 7.90 37.02 0.29 -1.96 16 22 H 0.49 0.70 8.96 -347.54 -3.12 -2.42 16 23 N -0.27 -4.71 9.74 -52.17 -0.51 -5.22 16 24 C -0.02 -0.53 6.33 22.49 0.14 -0.39 16 25 Cl -0.03 -0.62 26.17 -2.72 -0.07 -0.69 16 26 C -0.06 -1.53 9.38 22.53 0.21 -1.32 16 27 C -0.18 -7.44 5.70 -10.79 -0.06 -7.50 16 28 C -0.16 -5.60 9.79 30.60 0.30 -5.30 16 29 C -0.19 -6.68 9.85 30.60 0.30 -6.38 16 30 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 31 H 0.16 3.27 7.64 -2.91 -0.02 3.25 16 32 H 0.18 2.42 7.87 -2.91 -0.02 2.40 16 33 H 0.15 4.30 7.60 -2.91 -0.02 4.28 16 34 H 0.10 4.50 8.11 -2.38 -0.02 4.48 16 35 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 36 H 0.09 3.12 6.88 -2.39 -0.02 3.10 16 37 H 0.09 3.41 5.38 -2.39 -0.01 3.39 16 38 H 0.11 3.26 8.14 -2.38 -0.02 3.24 16 Total: -1.00 -69.85 345.45 2.99 -66.86 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -1.98 Total: 11.01 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 3.41 Total: -17.19 kcal Atomic # 7 Polarization: -68.50 SS G_CDS: -0.06 Total: -68.55 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.16 Total: -36.65 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.85 Total: 45.22 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.07 Total: -0.69 kcal Total: -69.85 2.99 -66.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592675997.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.829 kcal (2) G-P(sol) polarization free energy of solvation -69.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds