Wall clock time and date at job start Wed Apr 1 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99860 * 2 1 4 4 H 1.48500 * 109.47359 * 239.99997 * 3 2 1 5 5 H 1.48503 * 109.47385 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47117 * 120.00218 * 3 2 1 7 7 C 1.37879 * 120.00372 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99642 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47162 * 179.97438 * 9 7 2 11 11 S 1.80999 * 109.47571 * 180.02562 * 10 9 7 12 12 C 1.76196 * 100.00313 * 180.02562 * 11 10 9 13 13 N 1.31026 * 118.46505 * 0.02562 * 12 11 10 14 14 C 1.34811 * 121.60821 * 179.97438 * 13 12 11 15 15 C 1.39818 * 121.61651 * 180.02562 * 14 13 12 16 16 C 1.36636 * 119.66255 * 179.97438 * 15 14 13 17 17 C 1.38905 * 120.97295 * 359.97438 * 16 15 14 18 18 C 1.36759 * 120.73022 * 359.97438 * 17 16 15 19 19 C 1.39412 * 119.51224 * 0.02562 * 18 17 16 20 20 C 1.46920 * 121.88448 * 180.02562 * 19 18 17 21 21 O 1.21722 * 121.25248 * 359.94474 * 20 19 18 22 22 N 1.35347 * 117.49230 * 179.97438 * 20 19 18 23 23 C 1.46499 * 119.77032 * 179.97438 * 22 20 19 24 24 C 1.53003 * 109.47015 * 270.02124 * 23 22 20 25 25 C 1.50699 * 109.47292 * 180.02562 * 24 23 22 26 26 O 1.20825 * 119.99849 * 0.02562 * 25 24 23 27 27 O 1.34227 * 120.00349 * 179.97438 * 25 24 23 28 28 H 0.96999 * 120.00054 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46953 * 60.00031 * 9 7 2 30 30 H 1.09001 * 109.47158 * 300.00051 * 9 7 2 31 31 H 1.09005 * 109.47007 * 60.00253 * 10 9 7 32 32 H 1.08993 * 109.47431 * 300.00439 * 10 9 7 33 33 H 1.07993 * 120.17146 * 359.97438 * 15 14 13 34 34 H 1.08001 * 119.51149 * 180.28156 * 16 15 14 35 35 H 1.08001 * 119.62882 * 180.02562 * 17 16 15 36 36 H 1.08003 * 120.24267 * 180.02562 * 18 17 16 37 37 H 1.09001 * 109.47620 * 30.01523 * 23 22 20 38 38 H 1.08996 * 109.47284 * 150.02475 * 23 22 20 39 39 H 1.09006 * 109.46871 * 300.00290 * 24 23 22 40 40 H 1.09001 * 109.47243 * 59.99893 * 24 23 22 41 41 H 0.96696 * 117.00543 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 16 1.3405 -5.2296 -0.0026 12 6 2.6902 -6.3621 -0.0032 13 7 3.9090 -5.8811 -0.0025 14 6 4.9877 -6.6897 -0.0024 15 6 6.2883 -6.1767 -0.0012 16 6 7.3531 -7.0330 -0.0006 17 6 7.1637 -8.4091 -0.0008 18 6 5.9038 -8.9411 -0.0009 19 6 4.7992 -8.0906 -0.0015 20 6 3.4232 -8.6056 -0.0012 21 8 3.1965 -9.8016 -0.0014 22 7 2.4171 -7.7002 -0.0013 23 6 1.0258 -8.1588 -0.0015 24 6 0.5418 -8.3189 -1.4442 25 6 -0.8896 -8.7900 -1.4445 26 8 -1.4639 -8.9781 -0.3983 27 8 -1.5269 -8.9999 -2.6071 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5566 -0.8903 30 1 0.6248 -2.5570 0.8897 31 1 2.8727 -3.6047 0.8878 32 1 2.8714 -3.6039 -0.8922 33 1 6.4506 -5.1090 -0.0006 34 1 8.3567 -6.6341 0.0050 35 1 8.0209 -9.0660 0.0001 36 1 5.7656 -10.0123 -0.0006 37 1 0.9591 -9.1177 0.5124 38 1 0.4020 -7.4272 0.5118 39 1 0.6085 -7.3600 -1.9582 40 1 1.1657 -9.0505 -1.9577 41 1 -2.4443 -9.3014 -2.5567 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067079.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:12 Heat of formation + Delta-G solvation = -86.441678 kcal Electronic energy + Delta-G solvation = -27238.734115 eV Core-core repulsion = 23209.506962 eV Total energy + Delta-G solvation = -4029.227153 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.73655 -40.46002 -38.78242 -37.59190 -36.46737 -35.08576 -33.81027 -32.04368 -31.13388 -31.06335 -30.10993 -26.18794 -25.49082 -25.08413 -23.64488 -22.13855 -21.42046 -21.31102 -19.10491 -19.01059 -18.52611 -17.62926 -16.78546 -16.65734 -16.42148 -16.08553 -16.02162 -15.41057 -15.02824 -14.64609 -14.57067 -14.12856 -14.05429 -14.01861 -13.77235 -13.67653 -13.37418 -13.01108 -12.30509 -12.26541 -12.17559 -11.93010 -11.87853 -11.76788 -11.64179 -11.08101 -10.92727 -10.77113 -10.53744 -10.37306 -10.29046 -10.16089 -9.98669 -9.75496 -9.32253 -9.27534 -8.68640 -8.50117 -7.54807 -6.15019 -4.19720 0.32089 0.69653 1.10037 1.92848 2.04039 2.07903 2.53523 2.57581 2.92604 3.26900 3.31790 3.34250 3.84039 4.01114 4.22027 4.29594 4.35882 4.52926 4.64520 4.77001 4.91526 5.08163 5.12638 5.16089 5.21480 5.23974 5.31081 5.47358 5.72440 5.85128 5.90127 5.94902 6.06546 6.11100 6.22156 6.26213 6.40794 6.57716 6.63355 7.38517 7.44129 7.48308 7.60308 7.65543 7.79999 8.15555 8.84562 9.45100 10.95788 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.007771 B = 0.003638 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3602.289793 B = 7695.568403 C =11001.555453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.034 3.966 10 C -0.075 4.075 11 S -0.030 6.030 12 C 0.373 3.627 13 N -0.527 5.527 14 C 0.181 3.819 15 C -0.115 4.115 16 C -0.070 4.070 17 C -0.151 4.151 18 C -0.037 4.037 19 C -0.212 4.212 20 C 0.555 3.445 21 O -0.514 6.514 22 N -0.530 5.530 23 C 0.103 3.897 24 C -0.134 4.134 25 C 0.492 3.508 26 O -0.511 6.511 27 O -0.514 6.514 28 H 0.264 0.736 29 H 0.027 0.973 30 H 0.028 0.972 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.141 0.859 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.788 -17.985 -3.011 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.079 0.921 9 C -0.006 4.006 10 C -0.223 4.223 11 S 0.208 5.792 12 C 0.001 3.999 13 N -0.253 5.253 14 C 0.066 3.934 15 C -0.136 4.136 16 C -0.089 4.089 17 C -0.170 4.170 18 C -0.057 4.057 19 C -0.220 4.220 20 C 0.348 3.652 21 O -0.389 6.389 22 N -0.254 5.254 23 C -0.020 4.020 24 C -0.172 4.172 25 C 0.334 3.666 26 O -0.399 6.399 27 O -0.326 6.326 28 H 0.074 0.926 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.158 0.842 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 5.765 -17.934 -2.733 19.035 hybrid contribution 1.058 0.136 0.010 1.066 sum 6.822 -17.798 -2.723 19.254 Atomic orbital electron populations 1.69942 1.06104 1.27192 1.49742 1.24997 0.94902 0.99361 0.94854 0.86552 0.79515 0.82556 0.78798 1.20054 1.21186 1.20061 1.20980 0.93166 0.89706 1.52131 0.92084 1.19025 0.93437 0.89522 0.98605 1.24145 1.01779 0.89993 1.06348 1.86143 1.04740 1.00830 1.87503 1.25445 0.98304 0.85035 0.91088 1.69082 0.95329 1.34275 1.26577 1.18759 0.93094 0.88240 0.93346 1.20688 0.89516 1.01061 1.02297 1.21032 0.99133 0.93285 0.95473 1.20868 0.96907 0.95396 1.03873 1.20710 0.91029 0.99787 0.94152 1.20503 0.93050 0.94645 1.13761 1.18422 0.84944 0.85623 0.76183 1.90842 1.84562 1.13915 1.49614 1.46436 1.09109 1.05622 1.64249 1.21730 0.79367 1.04526 0.96359 1.21637 0.90384 1.05687 0.99516 1.22903 0.89115 0.73462 0.81113 1.90761 1.68060 1.47995 1.33126 1.84513 1.32657 1.79801 1.35596 0.92612 0.95420 0.95396 0.89127 0.89106 0.84167 0.85071 0.85310 0.84826 0.86879 0.86810 0.86154 0.86851 0.72745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.52 -13.63 9.11 -34.44 -0.31 -13.94 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.79 4.98 -27.89 -0.14 0.65 16 10 C -0.07 -1.41 4.72 37.16 0.18 -1.23 16 11 S -0.03 -0.47 19.82 -107.50 -2.13 -2.60 16 12 C 0.37 5.62 7.78 -88.53 -0.69 4.94 16 13 N -0.53 -8.35 8.95 -10.91 -0.10 -8.45 16 14 C 0.18 2.62 6.62 -84.78 -0.56 2.06 16 15 C -0.12 -1.39 9.99 -39.57 -0.40 -1.79 16 16 C -0.07 -0.66 9.95 -39.91 -0.40 -1.06 16 17 C -0.15 -1.42 9.97 -39.87 -0.40 -1.82 16 18 C -0.04 -0.43 9.63 -39.68 -0.38 -0.82 16 19 C -0.21 -2.99 5.89 -104.76 -0.62 -3.60 16 20 C 0.56 8.23 7.66 -12.49 -0.10 8.14 16 21 O -0.51 -8.22 16.31 5.17 0.08 -8.14 16 22 N -0.53 -7.35 2.62 -117.41 -0.31 -7.66 16 23 C 0.10 1.24 4.17 -4.04 -0.02 1.22 16 24 C -0.13 -1.38 6.13 -27.88 -0.17 -1.55 16 25 C 0.49 5.21 8.33 36.01 0.30 5.51 16 26 O -0.51 -6.78 16.74 -18.75 -0.31 -7.10 16 27 O -0.51 -4.23 13.42 -39.25 -0.53 -4.75 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.72 8.09 -51.91 -0.42 1.30 16 32 H 0.09 1.71 8.09 -51.92 -0.42 1.29 16 33 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.13 1.42 7.82 -52.48 -0.41 1.01 16 37 H 0.11 1.39 7.42 -51.93 -0.39 1.00 16 38 H 0.11 1.38 6.44 -51.93 -0.33 1.04 16 39 H 0.12 1.19 8.07 -51.93 -0.42 0.77 16 40 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.41 1.64 9.10 45.56 0.41 2.05 16 LS Contribution 372.09 15.07 5.61 5.61 Total: -1.00 -32.13 372.09 -9.82 -41.95 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.05 Total: 1.92 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -3.80 Total: -1.74 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.33 Total: -40.69 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.76 Total: -19.99 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: -0.47 SS G_CDS: -2.13 Total: -2.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.13 -9.82 -41.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067079.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.495 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds