Wall clock time and date at job start Wed Apr 1 2020 04:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86796 * 120.00261 * 2 1 4 4 H 1.48501 * 109.47274 * 269.62471 * 3 2 1 5 5 H 1.48497 * 109.47128 * 29.62733 * 3 2 1 6 6 H 1.48504 * 109.47128 * 149.62922 * 3 2 1 7 7 C 1.39078 * 119.99503 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00287 * 343.69172 * 7 2 1 9 9 N 1.36826 * 119.99856 * 163.68885 * 7 2 1 10 10 C 1.46499 * 120.00049 * 320.82610 * 9 7 2 11 11 C 1.50701 * 109.46901 * 263.99304 * 10 9 7 12 12 O 1.20822 * 120.00137 * 0.02562 * 11 10 9 13 13 O 1.34223 * 119.99738 * 179.97438 * 11 10 9 14 14 C 1.34777 * 119.99607 * 140.81864 * 9 7 2 15 15 O 1.21589 * 120.00505 * 2.55936 * 14 9 7 16 16 C 1.47788 * 119.99716 * 182.55635 * 14 9 7 17 17 C 1.39556 * 119.66510 * 173.36770 * 16 14 9 18 18 C 1.38285 * 119.12912 * 179.97438 * 17 16 14 19 19 C 1.39252 * 118.45580 * 0.02562 * 18 17 16 20 20 O 1.35729 * 120.37996 * 180.02562 * 19 18 17 21 21 C 1.42893 * 116.99991 * 179.97438 * 20 19 18 22 22 C 1.53007 * 109.46915 * 179.97438 * 21 20 19 23 23 F 1.39907 * 109.47051 * 59.99836 * 22 21 20 24 24 F 1.39896 * 109.47105 * 179.97438 * 22 21 20 25 25 F 1.39895 * 109.46913 * 300.00068 * 22 21 20 26 26 C 1.39234 * 119.25057 * 359.97438 * 19 18 17 27 27 N 1.31394 * 120.81130 * 0.02562 * 26 19 18 28 28 H 0.97006 * 119.99845 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47399 * 23.99523 * 10 9 7 30 30 H 1.09005 * 109.46823 * 143.99949 * 10 9 7 31 31 H 0.96707 * 117.00196 * 180.02562 * 13 11 10 32 32 H 1.08005 * 120.43382 * 0.27913 * 17 16 14 33 33 H 1.07994 * 120.77004 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.47710 * 299.99460 * 21 20 19 35 35 H 1.08999 * 109.47375 * 60.00153 * 21 20 19 36 36 H 1.07997 * 119.59581 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.5030 2.0418 -1.4000 5 1 1.4411 2.6549 0.6921 6 1 3.5411 1.4423 0.7079 7 6 2.0087 -1.2045 -0.0005 8 1 1.5013 -2.1211 0.2617 9 7 3.3357 -1.2283 -0.3334 10 6 3.8341 -0.3795 -1.4184 11 6 3.8913 -1.1782 -2.6951 12 8 3.5503 -2.3373 -2.6984 13 8 4.3201 -0.6016 -3.8287 14 6 4.1842 -2.0325 0.3372 15 8 3.7631 -2.7711 1.2064 16 6 5.6267 -2.0167 0.0159 17 6 6.5179 -2.7461 0.8042 18 6 7.8652 -2.7239 0.4932 19 6 8.2813 -1.9694 -0.6007 20 8 9.5943 -1.9203 -0.9413 21 6 9.9407 -1.1247 -2.0765 22 6 11.4524 -1.1910 -2.3035 23 9 11.8321 -2.5182 -2.5308 24 9 11.7916 -0.4125 -3.4153 25 9 12.1156 -0.7034 -1.1724 26 6 7.3351 -1.2667 -1.3420 27 7 6.0618 -1.3084 -1.0204 28 1 -0.4850 0.8401 0.0004 29 1 3.1650 0.4706 -1.5513 30 1 4.8327 -0.0205 -1.1694 31 1 4.3389 -1.1538 -4.6224 32 1 6.1595 -3.3242 1.6431 33 1 8.5780 -3.2787 1.0850 34 1 9.4237 -1.5043 -2.9578 35 1 9.6453 -0.0906 -1.8993 36 1 7.6516 -0.6801 -2.1918 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069641.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:34 Heat of formation + Delta-G solvation = -232.718440 kcal Electronic energy + Delta-G solvation = -31004.839549 eV Core-core repulsion = 25848.826655 eV Total energy + Delta-G solvation = -5156.012895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.081 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.59335 -48.14915 -48.04071 -41.06403 -39.87742 -38.93997 -37.73537 -35.66415 -34.91969 -32.89339 -32.13495 -31.16107 -29.91446 -27.99688 -25.74786 -24.72383 -23.68079 -22.77379 -21.66295 -20.00633 -19.46556 -19.13400 -18.48610 -18.12778 -17.66569 -17.34998 -16.96604 -16.44587 -16.43084 -16.09363 -15.61298 -15.08640 -14.91713 -14.91117 -14.85670 -14.49889 -14.33359 -14.20645 -14.20561 -13.98597 -13.88223 -13.44153 -13.29861 -13.09826 -12.69005 -12.44850 -12.42743 -12.23816 -12.01914 -11.79274 -11.05562 -11.01727 -10.62985 -10.12281 -9.98482 -9.87093 -9.51122 -9.22247 -8.78036 -8.65541 -7.98233 -6.55401 -4.14942 0.74239 1.07272 1.72443 2.54487 2.88442 2.88836 3.03263 3.12472 3.18080 3.19924 3.42255 3.54625 3.82713 3.96567 4.04301 4.14527 4.21706 4.36877 4.38049 4.45281 4.75512 4.87495 5.05024 5.22865 5.48099 5.62837 5.68274 5.87706 5.99049 6.08320 6.29782 6.70516 6.99263 7.32190 7.68474 8.09598 8.28706 8.50707 8.73471 9.08284 9.51006 10.55097 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.003116 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.826791 B = 8983.347728 C = 9442.730307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.060 3.940 3 Si 0.872 3.128 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.310 4.310 8 H 0.114 0.886 9 N -0.421 5.421 10 C 0.086 3.914 11 C 0.480 3.520 12 O -0.505 6.505 13 O -0.525 6.525 14 C 0.517 3.483 15 O -0.547 6.547 16 C 0.080 3.920 17 C -0.080 4.080 18 C -0.098 4.098 19 C 0.070 3.930 20 O -0.295 6.295 21 C 0.009 3.991 22 C 0.467 3.533 23 F -0.173 7.173 24 F -0.171 7.171 25 F -0.173 7.173 26 C 0.021 3.979 27 N -0.438 5.438 28 H 0.279 0.721 29 H 0.102 0.898 30 H 0.143 0.857 31 H 0.397 0.603 32 H 0.159 0.841 33 H 0.149 0.851 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.729 2.376 -6.675 22.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.148 4.148 3 Si 0.699 3.301 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.438 4.438 8 H 0.131 0.869 9 N -0.141 5.141 10 C -0.040 4.040 11 C 0.320 3.680 12 O -0.391 6.391 13 O -0.336 6.336 14 C 0.305 3.695 15 O -0.427 6.427 16 C -0.058 4.058 17 C -0.101 4.101 18 C -0.124 4.124 19 C 0.023 3.977 20 O -0.207 6.207 21 C -0.068 4.068 22 C 0.413 3.587 23 F -0.154 7.154 24 F -0.152 7.152 25 F -0.154 7.154 26 C -0.139 4.139 27 N -0.151 5.151 28 H 0.089 0.911 29 H 0.119 0.881 30 H 0.160 0.840 31 H 0.254 0.746 32 H 0.176 0.824 33 H 0.167 0.833 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 20.765 2.373 -6.243 21.812 hybrid contribution 1.112 0.258 -0.554 1.269 sum 21.877 2.630 -6.797 23.059 Atomic orbital electron populations 1.69660 1.06160 1.28416 1.44267 1.25462 0.95389 0.98457 0.95500 0.87064 0.81204 0.83375 0.78473 1.19323 1.20584 1.18163 1.19207 0.81629 0.96647 1.46290 0.86875 1.43198 1.08354 1.37396 1.25121 1.22125 1.04492 0.93747 0.83602 1.24133 0.71960 0.86979 0.84899 1.90680 1.44376 1.18477 1.85592 1.84553 1.80072 1.48889 1.20126 1.17527 0.83012 0.85437 0.83485 1.90683 1.76721 1.41462 1.33881 1.21790 0.96635 0.95232 0.92193 1.21991 0.91202 0.96884 0.99986 1.20879 0.96133 0.99492 0.95907 1.20062 0.82306 0.98702 0.96624 1.85967 1.23264 1.66330 1.45168 1.23862 0.90650 0.99934 0.92366 1.19945 0.90192 0.74224 0.74388 1.93246 1.92838 1.34999 1.94363 1.93238 1.93335 1.75150 1.53502 1.93243 1.83178 1.87747 1.51262 1.23016 0.89018 1.01112 1.00734 1.67959 1.15213 1.16546 1.15421 0.91052 0.88093 0.84013 0.74599 0.82351 0.83306 0.86921 0.86869 0.82242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.88 13.95 55.50 0.77 -23.11 16 2 C 0.06 1.61 5.36 -17.45 -0.09 1.51 16 3 Si 0.87 19.34 24.92 -169.99 -4.24 15.10 16 4 H -0.27 -5.41 6.50 56.52 0.37 -5.04 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 6 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.31 -8.76 9.39 -15.01 -0.14 -8.90 16 8 H 0.11 3.60 7.92 -52.49 -0.42 3.18 16 9 N -0.42 -10.47 1.73 -117.20 -0.20 -10.67 16 10 C 0.09 1.80 4.10 -5.19 -0.02 1.78 16 11 C 0.48 9.57 7.06 36.01 0.25 9.83 16 12 O -0.51 -11.85 17.05 -18.75 -0.32 -12.17 16 13 O -0.53 -7.84 13.42 -39.24 -0.53 -8.37 16 14 C 0.52 12.40 7.38 -12.36 -0.09 12.31 16 15 O -0.55 -14.60 16.21 5.29 0.09 -14.51 16 16 C 0.08 1.50 6.62 -83.03 -0.55 0.95 16 17 C -0.08 -1.21 9.62 -39.07 -0.38 -1.59 16 18 C -0.10 -1.18 10.12 -39.19 -0.40 -1.57 16 19 C 0.07 0.80 6.72 -38.83 -0.26 0.54 16 20 O -0.29 -2.85 10.03 -18.89 -0.19 -3.04 16 21 C 0.01 0.06 4.70 37.16 0.17 0.23 16 22 C 0.47 3.49 3.32 37.16 0.12 3.61 16 23 F -0.17 -1.55 17.26 2.25 0.04 -1.51 16 24 F -0.17 -1.23 17.32 2.25 0.04 -1.19 16 25 F -0.17 -1.54 17.26 2.25 0.04 -1.50 16 26 C 0.02 0.25 10.21 -17.37 -0.18 0.07 16 27 N -0.44 -7.19 4.99 -9.68 -0.05 -7.23 16 28 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.10 2.16 3.19 -51.93 -0.17 2.00 16 30 H 0.14 2.64 5.18 -53.14 -0.28 2.37 16 31 H 0.40 4.09 9.10 45.56 0.41 4.50 16 32 H 0.16 2.31 7.65 -52.48 -0.40 1.91 16 33 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.11 0.51 7.67 -51.93 -0.40 0.12 16 35 H 0.11 0.49 7.67 -51.93 -0.40 0.10 16 36 H 0.16 1.32 6.31 -52.49 -0.33 0.99 16 LS Contribution 330.51 15.07 4.98 4.98 Total: -1.00 -34.78 330.51 -2.68 -37.47 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -1.56 Total: 6.98 kcal Atomic # 6 Polarization: 20.33 SS G_CDS: -1.56 Total: 18.78 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.52 Total: -41.01 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -0.95 Total: -38.09 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.12 Total: -4.20 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.24 Total: 15.10 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.78 -2.68 -37.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069641.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -195.251 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -232.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds