Wall clock time and date at job start Wed Apr 1 2020 04:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86796 * 120.00261 * 2 1 4 4 H 1.48501 * 109.47274 * 269.62471 * 3 2 1 5 5 H 1.48497 * 109.47128 * 29.62733 * 3 2 1 6 6 H 1.48504 * 109.47128 * 149.62922 * 3 2 1 7 7 C 1.39078 * 119.99503 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00287 * 343.69172 * 7 2 1 9 9 N 1.36826 * 119.99856 * 163.68885 * 7 2 1 10 10 C 1.46499 * 120.00049 * 320.82610 * 9 7 2 11 11 C 1.50701 * 109.46901 * 263.99304 * 10 9 7 12 12 O 1.20822 * 120.00137 * 0.02562 * 11 10 9 13 13 O 1.34223 * 119.99738 * 179.97438 * 11 10 9 14 14 C 1.34777 * 119.99607 * 140.81864 * 9 7 2 15 15 O 1.21589 * 120.00505 * 2.55936 * 14 9 7 16 16 C 1.47788 * 119.99716 * 182.55635 * 14 9 7 17 17 C 1.39556 * 119.66510 * 173.36770 * 16 14 9 18 18 C 1.38285 * 119.12912 * 179.97438 * 17 16 14 19 19 C 1.39252 * 118.45580 * 0.02562 * 18 17 16 20 20 O 1.35729 * 120.37996 * 180.02562 * 19 18 17 21 21 C 1.42893 * 116.99991 * 179.97438 * 20 19 18 22 22 C 1.53007 * 109.46915 * 179.97438 * 21 20 19 23 23 F 1.39907 * 109.47051 * 59.99836 * 22 21 20 24 24 F 1.39896 * 109.47105 * 179.97438 * 22 21 20 25 25 F 1.39895 * 109.46913 * 300.00068 * 22 21 20 26 26 C 1.39234 * 119.25057 * 359.97438 * 19 18 17 27 27 N 1.31394 * 120.81130 * 0.02562 * 26 19 18 28 28 H 0.97006 * 119.99845 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47399 * 23.99523 * 10 9 7 30 30 H 1.09005 * 109.46823 * 143.99949 * 10 9 7 31 31 H 0.96707 * 117.00196 * 180.02562 * 13 11 10 32 32 H 1.08005 * 120.43382 * 0.27913 * 17 16 14 33 33 H 1.07994 * 120.77004 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.47710 * 299.99460 * 21 20 19 35 35 H 1.08999 * 109.47375 * 60.00153 * 21 20 19 36 36 H 1.07997 * 119.59581 * 180.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.5030 2.0418 -1.4000 5 1 1.4411 2.6549 0.6921 6 1 3.5411 1.4423 0.7079 7 6 2.0087 -1.2045 -0.0005 8 1 1.5013 -2.1211 0.2617 9 7 3.3357 -1.2283 -0.3334 10 6 3.8341 -0.3795 -1.4184 11 6 3.8913 -1.1782 -2.6951 12 8 3.5503 -2.3373 -2.6984 13 8 4.3201 -0.6016 -3.8287 14 6 4.1842 -2.0325 0.3372 15 8 3.7631 -2.7711 1.2064 16 6 5.6267 -2.0167 0.0159 17 6 6.5179 -2.7461 0.8042 18 6 7.8652 -2.7239 0.4932 19 6 8.2813 -1.9694 -0.6007 20 8 9.5943 -1.9203 -0.9413 21 6 9.9407 -1.1247 -2.0765 22 6 11.4524 -1.1910 -2.3035 23 9 11.8321 -2.5182 -2.5308 24 9 11.7916 -0.4125 -3.4153 25 9 12.1156 -0.7034 -1.1724 26 6 7.3351 -1.2667 -1.3420 27 7 6.0618 -1.3084 -1.0204 28 1 -0.4850 0.8401 0.0004 29 1 3.1650 0.4706 -1.5513 30 1 4.8327 -0.0205 -1.1694 31 1 4.3389 -1.1538 -4.6224 32 1 6.1595 -3.3242 1.6431 33 1 8.5780 -3.2787 1.0850 34 1 9.4237 -1.5043 -2.9578 35 1 9.6453 -0.0906 -1.8993 36 1 7.6516 -0.6801 -2.1918 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069641.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:33 Heat of formation + Delta-G solvation = -259.457588 kcal Electronic energy + Delta-G solvation = -31005.999046 eV Core-core repulsion = 25848.826655 eV Total energy + Delta-G solvation = -5157.172391 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.081 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.16726 -48.71092 -48.65297 -42.23640 -41.26635 -40.30722 -39.06254 -37.24095 -36.65028 -34.41126 -33.64811 -32.14216 -30.78586 -29.68010 -27.48521 -25.54130 -24.95625 -23.66433 -23.19433 -21.58289 -20.17093 -19.70760 -19.33779 -19.19758 -19.13484 -18.85397 -18.41494 -17.84171 -17.51718 -17.13757 -16.99482 -16.52565 -16.22211 -15.88003 -15.61488 -15.51638 -15.48163 -15.08267 -14.89127 -14.81339 -14.79836 -14.66560 -14.62262 -14.54415 -14.22095 -14.00724 -13.98668 -13.27411 -12.95819 -12.85218 -12.74682 -12.50447 -12.25910 -11.92109 -11.65860 -11.21902 -10.98466 -10.90256 -10.33975 -9.91327 -9.68067 -8.57187 -6.27740 -0.42640 0.04924 1.08260 1.16374 1.27715 1.36053 1.46444 1.67686 1.91308 2.08646 2.15641 2.53169 2.63817 2.66109 2.91980 3.02421 3.11854 3.24714 3.35381 3.64170 3.85960 3.94920 3.97432 4.03338 4.05192 4.37070 4.54249 4.61946 4.68187 4.92143 5.20587 5.42910 5.68717 5.80576 5.95906 6.32302 6.58581 6.76814 7.03236 7.17457 7.63027 8.59249 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.003116 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.826791 B = 8983.347728 C = 9442.730307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.012 3.988 3 Si 0.941 3.059 4 H -0.225 1.225 5 H -0.275 1.275 6 H -0.248 1.248 7 C -0.340 4.340 8 H 0.045 0.955 9 N -0.438 5.438 10 C 0.083 3.917 11 C 0.490 3.510 12 O -0.551 6.551 13 O -0.500 6.500 14 C 0.513 3.487 15 O -0.596 6.596 16 C 0.041 3.959 17 C -0.077 4.077 18 C -0.093 4.093 19 C 0.102 3.898 20 O -0.297 6.297 21 C -0.001 4.001 22 C 0.468 3.532 23 F -0.185 7.185 24 F -0.168 7.168 25 F -0.183 7.183 26 C 0.027 3.973 27 N -0.450 5.450 28 H 0.286 0.714 29 H 0.099 0.901 30 H 0.173 0.827 31 H 0.422 0.578 32 H 0.152 0.848 33 H 0.180 0.820 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.275 4.847 -8.851 28.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.191 4.191 3 Si 0.762 3.238 4 H -0.150 1.150 5 H -0.201 1.201 6 H -0.172 1.172 7 C -0.468 4.468 8 H 0.063 0.937 9 N -0.158 5.158 10 C -0.041 4.041 11 C 0.332 3.668 12 O -0.441 6.441 13 O -0.313 6.313 14 C 0.303 3.697 15 O -0.479 6.479 16 C -0.095 4.095 17 C -0.098 4.098 18 C -0.118 4.118 19 C 0.055 3.945 20 O -0.208 6.208 21 C -0.077 4.077 22 C 0.414 3.586 23 F -0.166 7.166 24 F -0.150 7.150 25 F -0.165 7.165 26 C -0.134 4.134 27 N -0.163 5.163 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.190 0.810 31 H 0.283 0.717 32 H 0.170 0.830 33 H 0.198 0.802 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 25.334 4.852 -8.474 27.151 hybrid contribution 0.042 -0.642 -0.012 0.643 sum 25.376 4.211 -8.485 27.086 Atomic orbital electron populations 1.69787 1.08185 1.29962 1.45967 1.26323 0.96171 1.02434 0.94164 0.85993 0.79730 0.77278 0.80838 1.15007 1.20070 1.17175 1.18707 0.83824 0.95134 1.49147 0.93691 1.43168 1.07072 1.38641 1.26916 1.22300 1.05641 0.92918 0.83197 1.23816 0.71131 0.85999 0.85830 1.90681 1.46529 1.20442 1.86422 1.84455 1.78647 1.48378 1.19784 1.18430 0.85497 0.83480 0.82296 1.90619 1.78541 1.43021 1.35768 1.20958 0.93611 0.99569 0.95398 1.21948 0.92311 0.96211 0.99373 1.21109 0.94918 0.99407 0.96414 1.20042 0.83043 0.96303 0.95159 1.85974 1.21724 1.66686 1.46459 1.24289 0.89834 1.01412 0.92162 1.20100 0.90734 0.73669 0.74105 1.93231 1.93056 1.35907 1.94413 1.93249 1.93383 1.75003 1.53327 1.93229 1.83569 1.87824 1.51855 1.23704 0.87303 1.00794 1.01552 1.67654 1.17556 1.16549 1.14559 0.90436 0.88374 0.81043 0.71678 0.83039 0.80220 0.84105 0.83730 0.77527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.70 13.95 21.68 0.30 -53.39 16 2 C 0.01 0.70 5.36 84.97 0.46 1.16 16 3 Si 0.94 39.68 24.92 68.60 1.71 41.39 16 4 H -0.23 -8.03 6.50 99.48 0.65 -7.38 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 7 C -0.34 -20.75 9.39 84.12 0.79 -19.96 16 8 H 0.05 3.24 7.92 -2.91 -0.02 3.21 16 9 N -0.44 -22.68 1.73 -642.96 -1.11 -23.79 16 10 C 0.08 3.41 4.10 85.63 0.35 3.76 16 11 C 0.49 18.81 7.06 71.24 0.50 19.31 16 12 O -0.55 -26.14 17.05 21.98 0.37 -25.77 16 13 O -0.50 -12.92 13.42 -51.35 -0.69 -13.61 16 14 C 0.51 25.84 7.38 86.77 0.64 26.48 16 15 O -0.60 -34.50 16.21 -4.00 -0.06 -34.57 16 16 C 0.04 1.51 6.62 41.83 0.28 1.79 16 17 C -0.08 -2.28 9.62 22.60 0.22 -2.06 16 18 C -0.09 -1.89 10.12 22.53 0.23 -1.66 16 19 C 0.10 1.80 6.72 22.75 0.15 1.95 16 20 O -0.30 -4.02 10.03 -90.52 -0.91 -4.93 16 21 C 0.00 -0.01 4.70 71.98 0.34 0.33 16 22 C 0.47 4.99 3.32 71.98 0.24 5.22 16 23 F -0.18 -2.68 17.26 44.97 0.78 -1.90 16 24 F -0.17 -1.74 17.32 44.97 0.78 -0.96 16 25 F -0.18 -2.60 17.26 44.97 0.78 -1.82 16 26 C 0.03 0.52 10.21 85.00 0.87 1.38 16 27 N -0.45 -13.37 4.99 -184.54 -0.92 -14.29 16 28 H 0.29 15.31 8.31 -92.70 -0.77 14.54 16 29 H 0.10 4.00 3.19 -2.39 -0.01 3.99 16 30 H 0.17 5.88 5.18 -4.79 -0.02 5.85 16 31 H 0.42 6.89 9.10 -74.05 -0.67 6.22 16 32 H 0.15 4.55 7.65 -2.91 -0.02 4.53 16 33 H 0.18 2.53 8.06 -2.91 -0.02 2.50 16 34 H 0.14 0.28 7.67 -2.39 -0.02 0.26 16 35 H 0.15 0.20 7.67 -2.39 -0.02 0.18 16 36 H 0.21 1.80 6.31 -2.91 -0.02 1.79 16 Total: -1.00 -86.66 330.51 6.54 -80.12 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.46 Total: 15.81 kcal Atomic # 6 Polarization: 32.65 SS G_CDS: 5.06 Total: 37.71 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -1.73 Total: -91.48 kcal Atomic # 8 Polarization: -77.59 SS G_CDS: -1.29 Total: -78.87 kcal Atomic # 9 Polarization: -7.01 SS G_CDS: 2.33 Total: -4.68 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 1.71 Total: 41.39 kcal Total: -86.66 6.54 -80.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069641.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.341 kcal (2) G-P(sol) polarization free energy of solvation -86.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -266.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds