Wall clock time and date at job start Wed Apr 1 2020 04:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86792 * 120.00106 * 2 1 4 4 H 1.48508 * 109.47134 * 270.00032 * 3 2 1 5 5 H 1.48497 * 109.47413 * 30.00173 * 3 2 1 6 6 H 1.48501 * 109.47089 * 150.00203 * 3 2 1 7 7 C 1.40308 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99830 * 170.14938 * 7 2 1 9 9 C 1.40542 * 120.00290 * 350.14598 * 7 2 1 10 10 C 1.44191 * 123.71013 * 336.46300 * 9 7 2 11 11 C 1.32762 * 114.42848 * 180.02562 * 10 9 7 12 12 S 1.75477 * 111.36165 * 359.73041 * 11 10 9 13 13 C 1.39546 * 123.71686 * 156.49829 * 9 7 2 14 14 C 1.46235 * 125.22700 * 359.97111 * 13 9 7 15 15 O 1.21757 * 120.00235 * 359.97438 * 14 13 9 16 16 N 1.34778 * 119.99949 * 180.02562 * 14 13 9 17 17 C 1.47063 * 136.05527 * 359.61823 * 16 14 13 18 18 C 1.53497 * 87.98701 * 153.14409 * 17 16 14 19 19 N 1.46497 * 114.21136 * 139.65508 * 18 17 16 20 20 C 1.34785 * 126.58422 * 351.11617 * 19 18 17 21 21 C 1.36663 * 106.83556 * 179.84934 * 20 19 18 22 22 C 1.47386 * 125.78168 * 180.15500 * 21 20 19 23 23 O 1.21516 * 119.99486 * 0.28441 * 22 21 20 24 24 O 1.34746 * 120.00165 * 180.28539 * 22 21 20 25 25 N 1.34437 * 108.43628 * 0.42198 * 21 20 19 26 26 N 1.28761 * 109.51447 * 359.73702 * 25 21 20 27 27 C 1.47059 * 136.05781 * 179.97438 * 16 14 13 28 28 H 0.97000 * 119.99791 * 359.97438 * 1 2 3 29 29 H 1.07994 * 122.78867 * 0.02989 * 10 9 7 30 30 H 1.07995 * 124.32326 * 179.97438 * 11 10 9 31 31 H 1.09002 * 113.46893 * 267.92253 * 17 16 14 32 32 H 1.09000 * 113.46947 * 38.36686 * 17 16 14 33 33 H 1.09002 * 114.20648 * 272.48609 * 18 17 16 34 34 H 1.08008 * 126.57861 * 359.95879 * 20 19 18 35 35 H 0.96696 * 117.00199 * 179.97438 * 24 22 21 36 36 H 1.09006 * 113.46927 * 321.63703 * 27 16 14 37 37 H 1.08996 * 113.47017 * 92.02088 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4379 2.6526 0.7000 6 1 3.5380 1.4400 0.7000 7 6 2.0079 -1.2151 -0.0005 8 1 3.0759 -1.2220 -0.1606 9 6 1.3207 -2.4234 0.2072 10 6 0.0551 -2.5167 0.8918 11 6 -0.4292 -3.7494 0.9849 12 16 0.6386 -4.9149 0.2228 13 6 1.7884 -3.6648 -0.2257 14 6 3.0402 -3.8897 -0.9475 15 8 3.7658 -2.9494 -1.2154 16 7 3.3902 -5.1377 -1.3170 17 6 2.8126 -6.4834 -1.1813 18 6 3.5677 -6.8773 -2.4583 19 7 4.1601 -8.2165 -2.4172 20 6 4.2433 -9.0254 -1.3422 21 6 4.8634 -10.1708 -1.7559 22 6 5.1646 -11.3408 -0.9117 23 8 4.8504 -11.3399 0.2622 24 8 5.7883 -12.4113 -1.4415 25 7 5.1575 -10.0472 -3.0618 26 7 4.7547 -8.9005 -3.4868 27 6 4.5206 -5.7538 -2.0277 28 1 -0.4850 0.8401 0.0004 29 1 -0.4564 -1.6555 1.2953 30 1 -1.3631 -4.0021 1.4646 31 1 3.1547 -7.0151 -0.2933 32 1 1.7287 -6.5040 -1.2941 33 1 3.0236 -6.6725 -3.3804 34 1 3.8866 -8.8103 -0.3457 35 1 5.9648 -13.1545 -0.8486 36 1 4.8887 -5.1541 -2.8602 37 1 5.3184 -6.0901 -1.3656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601078877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:18 Heat of formation + Delta-G solvation = 45.538172 kcal Electronic energy + Delta-G solvation = -26666.425125 eV Core-core repulsion = 22539.380705 eV Total energy + Delta-G solvation = -4127.044420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.63602 -40.27348 -39.85645 -37.42128 -36.36597 -35.91282 -33.77437 -33.22719 -31.42413 -29.64103 -28.77498 -26.60419 -26.06991 -24.96898 -23.92641 -22.24358 -21.44070 -21.20996 -19.54680 -18.81044 -18.66068 -17.96807 -17.33913 -16.61159 -16.39586 -16.28227 -15.61857 -15.46645 -15.25415 -15.02161 -14.19437 -14.02708 -13.82539 -13.72751 -13.55561 -12.93772 -12.63131 -12.53747 -12.45045 -12.22806 -11.96649 -11.86054 -11.61432 -11.58271 -11.35721 -11.28169 -11.11841 -11.08051 -10.61626 -10.43053 -10.29845 -9.77463 -9.66940 -9.37532 -8.77535 -8.43143 -7.67085 -7.30813 -7.21525 -4.71189 0.73895 1.25259 1.56763 1.98709 2.65640 2.74022 2.86168 2.89973 2.95597 2.97598 3.20690 3.47651 3.62469 3.66457 3.72286 3.92205 4.14008 4.33599 4.43649 4.57632 4.76152 5.02864 5.12282 5.15955 5.31491 5.41215 5.46212 5.61777 5.65113 5.93115 6.08894 6.11727 6.58360 6.70095 7.00436 7.06122 7.31500 7.47948 7.53928 7.74332 8.11380 8.23249 8.41477 8.55247 9.23606 9.68834 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.021029 B = 0.002423 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.203469 B =11554.608048 C =12336.278790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.067 3.933 3 Si 0.927 3.073 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.371 4.371 8 H 0.112 0.888 9 C 0.142 3.858 10 C -0.099 4.099 11 C -0.207 4.207 12 S -0.048 6.048 13 C -0.430 4.430 14 C 0.635 3.365 15 O -0.549 6.549 16 N -0.650 5.650 17 C 0.101 3.899 18 C 0.103 3.897 19 N -0.339 5.339 20 C 0.110 3.890 21 C -0.098 4.098 22 C 0.579 3.421 23 O -0.512 6.512 24 O -0.498 6.498 25 N -0.185 5.185 26 N -0.053 5.053 27 C 0.106 3.894 28 H 0.291 0.709 29 H 0.146 0.854 30 H 0.138 0.862 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.153 0.847 34 H 0.210 0.790 35 H 0.416 0.584 36 H 0.092 0.908 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 -13.109 -0.593 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.156 4.156 3 Si 0.750 3.250 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.401 4.401 8 H 0.130 0.870 9 C 0.131 3.869 10 C -0.131 4.131 11 C -0.340 4.340 12 S 0.207 5.793 13 C -0.549 4.549 14 C 0.437 3.563 15 O -0.431 6.431 16 N -0.390 5.390 17 C -0.025 4.025 18 C 0.000 4.000 19 N -0.122 5.122 20 C -0.048 4.048 21 C -0.235 4.235 22 C 0.421 3.579 23 O -0.399 6.399 24 O -0.308 6.308 25 N -0.059 5.059 26 N -0.034 5.034 27 C -0.019 4.019 28 H 0.102 0.898 29 H 0.163 0.837 30 H 0.155 0.845 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.170 0.830 34 H 0.226 0.774 35 H 0.275 0.725 36 H 0.111 0.889 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.430 -13.268 -2.280 13.892 hybrid contribution -0.125 1.656 1.667 2.353 sum 3.305 -11.611 -0.613 12.088 Atomic orbital electron populations 1.69659 1.08143 1.30730 1.30875 1.26422 0.94996 1.02785 0.91431 0.85967 0.80561 0.78504 0.79987 1.18737 1.19752 1.17766 1.20086 0.97757 0.88873 1.33389 0.87049 1.17912 0.89546 0.91640 0.87780 1.21710 0.96229 0.96166 0.98960 1.25068 1.03539 0.97233 1.08176 1.82642 1.18032 1.13962 1.64692 1.22268 1.04794 0.95811 1.32030 1.16417 0.84714 0.78059 0.77119 1.90706 1.54468 1.39456 1.58421 1.49177 1.23359 1.04748 1.61708 1.23222 1.01030 0.83984 0.94267 1.23992 0.97317 0.75533 1.03109 1.50537 1.39435 1.14679 1.07578 1.23373 0.96543 0.89496 0.95372 1.20100 1.14574 0.96494 0.92308 1.19057 0.73620 0.81071 0.84199 1.90959 1.50958 1.81358 1.16638 1.84635 1.71626 1.27399 1.47169 1.74796 1.12326 1.10019 1.08807 1.82132 1.13309 0.99690 1.08220 1.23090 0.91393 0.90522 0.96899 0.89802 0.83700 0.84450 0.89482 0.87924 0.82950 0.77352 0.72546 0.88943 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.62 10.82 55.57 0.60 -17.01 16 2 C 0.07 1.53 5.39 -17.28 -0.09 1.44 16 3 Si 0.93 17.59 29.57 -169.99 -5.03 12.56 16 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 6 H -0.25 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.37 -9.46 8.51 -37.94 -0.32 -9.78 16 8 H 0.11 2.99 6.04 -52.49 -0.32 2.67 16 9 C 0.14 3.57 5.68 -106.21 -0.60 2.97 16 10 C -0.10 -2.26 9.04 -39.12 -0.35 -2.61 16 11 C -0.21 -4.18 11.07 28.86 0.32 -3.86 16 12 S -0.05 -0.93 19.96 -107.50 -2.15 -3.07 16 13 C -0.43 -10.12 6.50 -35.88 -0.23 -10.35 16 14 C 0.63 14.44 8.01 -13.05 -0.10 14.33 16 15 O -0.55 -14.24 15.23 5.14 0.08 -14.16 16 16 N -0.65 -11.07 3.69 -186.99 -0.69 -11.76 16 17 C 0.10 1.26 6.58 -8.52 -0.06 1.20 16 18 C 0.10 1.11 5.43 -67.82 -0.37 0.74 16 19 N -0.34 -3.69 3.85 -54.37 -0.21 -3.90 16 20 C 0.11 1.10 10.49 -16.82 -0.18 0.92 16 21 C -0.10 -1.12 7.02 -83.57 -0.59 -1.71 16 22 C 0.58 6.17 8.33 34.45 0.29 6.46 16 23 O -0.51 -6.30 17.65 -19.28 -0.34 -6.64 16 24 O -0.50 -4.13 13.43 -40.62 -0.55 -4.68 16 25 N -0.18 -2.43 12.39 32.83 0.41 -2.02 16 26 N -0.05 -0.68 13.78 60.35 0.83 0.15 16 27 C 0.11 1.38 8.42 -8.53 -0.07 1.31 16 28 H 0.29 5.93 8.29 -40.82 -0.34 5.59 16 29 H 0.15 3.30 6.40 -52.49 -0.34 2.97 16 30 H 0.14 2.35 8.06 -52.49 -0.42 1.93 16 31 H 0.09 0.91 6.44 -51.93 -0.33 0.58 16 32 H 0.10 1.33 6.33 -51.93 -0.33 1.00 16 33 H 0.15 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.21 1.54 6.82 -52.48 -0.36 1.18 16 35 H 0.42 1.25 9.11 45.56 0.42 1.66 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 344.11 15.07 5.19 5.19 Total: -1.00 -31.56 344.11 -6.30 -37.87 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -2.08 Total: 6.43 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.36 Total: 1.06 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.94 Total: -34.55 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.81 Total: -25.48 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.15 Total: -3.07 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.56 -6.30 -37.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.404 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds