Wall clock time and date at job start Wed Apr 1 2020 04:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86792 * 120.00106 * 2 1 4 4 H 1.48508 * 109.47134 * 270.00032 * 3 2 1 5 5 H 1.48497 * 109.47413 * 30.00173 * 3 2 1 6 6 H 1.48501 * 109.47089 * 150.00203 * 3 2 1 7 7 C 1.40308 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99830 * 170.14938 * 7 2 1 9 9 C 1.40542 * 120.00290 * 350.14598 * 7 2 1 10 10 C 1.44191 * 123.71013 * 336.46300 * 9 7 2 11 11 C 1.32762 * 114.42848 * 180.02562 * 10 9 7 12 12 S 1.75477 * 111.36165 * 359.73041 * 11 10 9 13 13 C 1.39546 * 123.71686 * 156.49829 * 9 7 2 14 14 C 1.46235 * 125.22700 * 359.97111 * 13 9 7 15 15 O 1.21757 * 120.00235 * 359.97438 * 14 13 9 16 16 N 1.34778 * 119.99949 * 180.02562 * 14 13 9 17 17 C 1.47063 * 136.05527 * 359.61823 * 16 14 13 18 18 C 1.53497 * 87.98701 * 153.14409 * 17 16 14 19 19 N 1.46497 * 114.21136 * 139.65508 * 18 17 16 20 20 C 1.34785 * 126.58422 * 351.11617 * 19 18 17 21 21 C 1.36663 * 106.83556 * 179.84934 * 20 19 18 22 22 C 1.47386 * 125.78168 * 180.15500 * 21 20 19 23 23 O 1.21516 * 119.99486 * 0.28441 * 22 21 20 24 24 O 1.34746 * 120.00165 * 180.28539 * 22 21 20 25 25 N 1.34437 * 108.43628 * 0.42198 * 21 20 19 26 26 N 1.28761 * 109.51447 * 359.73702 * 25 21 20 27 27 C 1.47059 * 136.05781 * 179.97438 * 16 14 13 28 28 H 0.97000 * 119.99791 * 359.97438 * 1 2 3 29 29 H 1.07994 * 122.78867 * 0.02989 * 10 9 7 30 30 H 1.07995 * 124.32326 * 179.97438 * 11 10 9 31 31 H 1.09002 * 113.46893 * 267.92253 * 17 16 14 32 32 H 1.09000 * 113.46947 * 38.36686 * 17 16 14 33 33 H 1.09002 * 114.20648 * 272.48609 * 18 17 16 34 34 H 1.08008 * 126.57861 * 359.95879 * 20 19 18 35 35 H 0.96696 * 117.00199 * 179.97438 * 24 22 21 36 36 H 1.09006 * 113.46927 * 321.63703 * 27 16 14 37 37 H 1.08996 * 113.47017 * 92.02088 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4379 2.6526 0.7000 6 1 3.5380 1.4400 0.7000 7 6 2.0079 -1.2151 -0.0005 8 1 3.0759 -1.2220 -0.1606 9 6 1.3207 -2.4234 0.2072 10 6 0.0551 -2.5167 0.8918 11 6 -0.4292 -3.7494 0.9849 12 16 0.6386 -4.9149 0.2228 13 6 1.7884 -3.6648 -0.2257 14 6 3.0402 -3.8897 -0.9475 15 8 3.7658 -2.9494 -1.2154 16 7 3.3902 -5.1377 -1.3170 17 6 2.8126 -6.4834 -1.1813 18 6 3.5677 -6.8773 -2.4583 19 7 4.1601 -8.2165 -2.4172 20 6 4.2433 -9.0254 -1.3422 21 6 4.8634 -10.1708 -1.7559 22 6 5.1646 -11.3408 -0.9117 23 8 4.8504 -11.3399 0.2622 24 8 5.7883 -12.4113 -1.4415 25 7 5.1575 -10.0472 -3.0618 26 7 4.7547 -8.9005 -3.4868 27 6 4.5206 -5.7538 -2.0277 28 1 -0.4850 0.8401 0.0004 29 1 -0.4564 -1.6555 1.2953 30 1 -1.3631 -4.0021 1.4646 31 1 3.1547 -7.0151 -0.2933 32 1 1.7287 -6.5040 -1.2941 33 1 3.0236 -6.6725 -3.3804 34 1 3.8866 -8.8103 -0.3457 35 1 5.9648 -13.1545 -0.8486 36 1 4.8887 -5.1541 -2.8602 37 1 5.3184 -6.0901 -1.3656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601078877.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:18 Heat of formation + Delta-G solvation = 22.611580 kcal Electronic energy + Delta-G solvation = -26667.419296 eV Core-core repulsion = 22539.380705 eV Total energy + Delta-G solvation = -4128.038592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.53972 -41.36237 -40.79447 -39.04996 -37.61192 -37.11518 -34.93967 -34.81900 -32.29914 -31.20107 -30.27148 -28.00216 -27.27306 -25.99408 -25.01138 -23.76325 -22.37527 -22.26630 -21.00152 -20.46340 -19.54953 -18.89083 -18.61727 -17.99404 -17.49683 -17.28532 -17.17273 -16.64271 -16.36299 -16.14491 -15.63417 -15.28632 -15.19817 -14.92042 -14.63242 -14.23189 -13.97426 -13.90406 -13.79796 -13.55092 -13.23169 -13.17364 -12.96741 -12.77905 -12.64118 -12.57918 -12.42794 -12.05698 -12.05240 -11.92494 -11.50791 -11.36321 -11.01898 -10.58604 -10.51176 -9.85528 -9.37109 -8.94465 -8.89187 -6.47911 -0.08914 0.27100 0.34932 0.65136 1.31985 1.33727 1.36720 1.46858 1.75472 1.87669 1.90608 1.93094 2.01493 2.14829 2.46215 2.65880 3.08934 3.26572 3.31065 3.59248 3.73138 3.96700 4.06146 4.16183 4.21838 4.35466 4.39965 4.53611 4.60846 4.72465 4.94879 5.10173 5.22291 5.25959 5.39638 5.48636 5.58234 5.82979 6.33082 6.54311 6.67688 6.69707 6.85124 7.00245 7.55134 8.03574 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.021029 B = 0.002423 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.203469 B =11554.608048 C =12336.278790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.036 3.964 3 Si 0.987 3.013 4 H -0.265 1.265 5 H -0.249 1.249 6 H -0.265 1.265 7 C -0.414 4.414 8 H 0.084 0.916 9 C 0.114 3.886 10 C -0.131 4.131 11 C -0.198 4.198 12 S 0.030 5.970 13 C -0.464 4.464 14 C 0.628 3.372 15 O -0.597 6.597 16 N -0.660 5.660 17 C 0.100 3.900 18 C 0.131 3.869 19 N -0.337 5.337 20 C 0.122 3.878 21 C -0.109 4.109 22 C 0.586 3.414 23 O -0.531 6.531 24 O -0.497 6.497 25 N -0.201 5.201 26 N -0.072 5.072 27 C 0.101 3.899 28 H 0.302 0.698 29 H 0.138 0.862 30 H 0.174 0.826 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.166 0.834 34 H 0.238 0.762 35 H 0.438 0.562 36 H 0.088 0.912 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.551 -15.146 -0.159 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.185 4.185 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.172 1.172 6 H -0.189 1.189 7 C -0.445 4.445 8 H 0.102 0.898 9 C 0.103 3.897 10 C -0.164 4.164 11 C -0.332 4.332 12 S 0.286 5.714 13 C -0.582 4.582 14 C 0.429 3.571 15 O -0.482 6.482 16 N -0.397 5.397 17 C -0.024 4.024 18 C 0.029 3.971 19 N -0.120 5.120 20 C -0.035 4.035 21 C -0.246 4.246 22 C 0.428 3.572 23 O -0.420 6.420 24 O -0.311 6.311 25 N -0.076 5.076 26 N -0.052 5.052 27 C -0.022 4.022 28 H 0.113 0.887 29 H 0.156 0.844 30 H 0.191 0.809 31 H 0.134 0.866 32 H 0.122 0.878 33 H 0.183 0.817 34 H 0.254 0.746 35 H 0.301 0.699 36 H 0.106 0.894 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.763 -15.416 -1.863 15.772 hybrid contribution 0.130 1.973 1.502 2.483 sum 2.893 -13.443 -0.360 13.756 Atomic orbital electron populations 1.69643 1.08749 1.32021 1.30948 1.27027 0.95793 1.04834 0.90812 0.85113 0.79111 0.75324 0.79753 1.18936 1.17211 1.18861 1.20030 0.96865 0.90800 1.36799 0.89814 1.18358 0.90840 0.92354 0.88195 1.21583 0.96435 0.97264 1.01073 1.25600 1.04464 0.96719 1.06394 1.82146 1.15337 1.11000 1.62963 1.22819 1.06216 0.97443 1.31731 1.16453 0.84392 0.79332 0.76965 1.90664 1.55696 1.41758 1.60045 1.48894 1.25235 1.04791 1.60780 1.23493 1.01252 0.81406 0.96277 1.23616 0.95713 0.74936 1.02867 1.50423 1.39433 1.14480 1.07659 1.23839 0.95146 0.88610 0.95914 1.20391 1.14842 0.97432 0.91968 1.18917 0.73339 0.81276 0.83678 1.90955 1.51960 1.81815 1.17264 1.84594 1.70842 1.27733 1.47902 1.74778 1.12755 1.10247 1.09793 1.82126 1.14228 0.99976 1.08914 1.23315 0.91285 0.90858 0.96778 0.88696 0.84446 0.80882 0.86650 0.87808 0.81700 0.74560 0.69948 0.89381 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.97 10.82 21.89 0.24 -36.73 16 2 C 0.04 1.72 5.39 85.37 0.46 2.18 16 3 Si 0.99 37.15 29.57 68.60 2.03 39.18 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.25 -8.30 7.11 99.48 0.71 -7.59 16 6 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 7 C -0.41 -22.36 8.51 23.34 0.20 -22.16 16 8 H 0.08 4.86 6.04 -2.91 -0.02 4.84 16 9 C 0.11 5.91 5.68 -20.89 -0.12 5.79 16 10 C -0.13 -6.06 9.04 22.61 0.20 -5.86 16 11 C -0.20 -7.65 11.07 66.64 0.74 -6.91 16 12 S 0.03 1.08 19.96 -56.49 -1.13 -0.05 16 13 C -0.46 -21.99 6.50 24.66 0.16 -21.83 16 14 C 0.63 29.10 8.01 86.32 0.69 29.79 16 15 O -0.60 -32.50 15.23 -4.53 -0.07 -32.57 16 16 N -0.66 -21.78 3.69 -863.71 -3.19 -24.96 16 17 C 0.10 2.20 6.58 83.17 0.55 2.74 16 18 C 0.13 2.48 5.43 45.46 0.25 2.72 16 19 N -0.34 -6.39 3.85 -325.93 -1.25 -7.65 16 20 C 0.12 2.05 10.49 83.87 0.88 2.93 16 21 C -0.11 -2.25 7.02 40.79 0.29 -1.96 16 22 C 0.59 11.16 8.33 70.23 0.59 11.74 16 23 O -0.53 -11.80 17.65 19.79 0.35 -11.45 16 24 O -0.50 -7.15 13.43 -56.57 -0.76 -7.91 16 25 N -0.20 -4.94 12.39 -50.04 -0.62 -5.56 16 26 N -0.07 -1.73 13.78 37.02 0.51 -1.22 16 27 C 0.10 2.49 8.42 83.17 0.70 3.19 16 28 H 0.30 12.40 8.29 -92.71 -0.77 11.63 16 29 H 0.14 6.42 6.40 -2.91 -0.02 6.41 16 30 H 0.17 5.32 8.06 -2.91 -0.02 5.29 16 31 H 0.12 1.92 6.44 -2.39 -0.02 1.91 16 32 H 0.10 2.32 6.33 -2.39 -0.02 2.30 16 33 H 0.17 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.24 2.46 6.82 -2.91 -0.02 2.44 16 35 H 0.44 1.57 9.11 -74.06 -0.67 0.90 16 36 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -72.22 344.11 2.20 -70.03 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.51 Total: 16.52 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 5.58 Total: 2.37 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -4.31 Total: -76.12 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -0.48 Total: -51.93 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -1.13 Total: -0.05 kcal Total: -72.22 2.20 -70.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078877.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.637 kcal (2) G-P(sol) polarization free energy of solvation -72.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds