Wall clock time and date at job start Wed Apr 1 2020 04:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 119.99967 * 2 1 4 4 H 1.48509 * 109.46878 * 269.99910 * 3 2 1 5 5 H 1.48498 * 109.47117 * 29.99842 * 3 2 1 6 6 H 1.48500 * 109.47171 * 150.00392 * 3 2 1 7 7 C 1.38986 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99396 * 182.47091 * 7 2 1 9 9 N 1.36933 * 120.00338 * 2.46791 * 7 2 1 10 10 C 1.46505 * 120.00201 * 313.13041 * 9 7 2 11 11 C 1.52991 * 109.46870 * 264.28123 * 10 9 7 12 12 C 1.50701 * 109.47016 * 179.97438 * 11 10 9 13 13 O 1.20830 * 120.00082 * 0.02562 * 12 11 10 14 14 O 1.34231 * 120.00412 * 179.97438 * 12 11 10 15 15 C 1.34781 * 120.00104 * 133.12598 * 9 7 2 16 16 O 1.21653 * 120.00184 * 185.24686 * 15 9 7 17 17 C 1.47250 * 119.99962 * 5.24526 * 15 9 7 18 18 C 1.36417 * 122.56875 * 174.43788 * 17 15 9 19 19 S 1.71011 * 108.98290 * 180.02562 * 18 17 15 20 20 C 1.75964 * 90.63367 * 359.97438 * 19 18 17 21 21 C 1.47894 * 125.21900 * 180.02562 * 20 19 18 22 22 C 1.39642 * 120.12189 * 359.74382 * 21 20 19 23 23 N 1.31956 * 119.84970 * 180.29718 * 22 21 20 24 24 C 1.32234 * 120.10967 * 359.96034 * 23 22 21 25 25 C 1.38462 * 120.24279 * 0.04408 * 24 23 22 26 26 N 1.31985 * 120.15356 * 359.97438 * 25 24 23 27 27 N 1.29788 * 109.56660 * 0.26557 * 20 19 18 28 28 H 0.96997 * 120.00233 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47079 * 24.28226 * 10 9 7 30 30 H 1.09002 * 109.46910 * 144.28192 * 10 9 7 31 31 H 1.08999 * 109.47354 * 299.99935 * 11 10 9 32 32 H 1.09002 * 109.47297 * 60.00306 * 11 10 9 33 33 H 0.96699 * 117.00610 * 180.02562 * 14 12 11 34 34 H 1.08005 * 125.50336 * 0.04103 * 18 17 15 35 35 H 1.08001 * 120.07457 * 0.25985 * 22 21 20 36 36 H 1.07990 * 119.87542 * 180.02562 * 24 23 22 37 37 H 1.08000 * 119.92066 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4002 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.6999 7 6 2.0090 -1.2037 -0.0005 8 1 3.0883 -1.2041 0.0398 9 7 1.3253 -2.3890 -0.0521 10 6 0.1742 -2.6096 0.8268 11 6 0.6260 -3.3630 2.0794 12 6 -0.5580 -3.5894 2.9838 13 8 -1.6512 -3.1895 2.6596 14 8 -0.3985 -4.2362 4.1492 15 6 1.7113 -3.3528 -0.9116 16 8 1.0487 -4.3666 -1.0262 17 6 2.9349 -3.1786 -1.7120 18 6 3.4343 -4.1628 -2.5138 19 16 4.8548 -3.5921 -3.2761 20 6 4.6921 -2.0408 -2.4615 21 6 5.6179 -0.8973 -2.6118 22 6 6.7298 -1.0014 -3.4501 23 7 7.5555 0.0202 -3.5757 24 6 7.3307 1.1405 -2.9102 25 6 6.2295 1.2483 -2.0779 26 7 5.3973 0.2326 -1.9445 27 7 3.6379 -2.0558 -1.7045 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2524 -1.6488 1.1149 30 1 -0.5775 -3.1977 0.3004 31 1 1.0525 -4.3238 1.7913 32 1 1.3777 -2.7749 2.6059 33 1 -1.1871 -4.3578 4.6954 34 1 3.0021 -5.1437 -2.6460 35 1 6.9140 -1.9162 -3.9938 36 1 8.0087 1.9744 -3.0162 37 1 6.0511 2.1656 -1.5365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608186549.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:39 Heat of formation + Delta-G solvation = -7.872699 kcal Electronic energy + Delta-G solvation = -27625.721423 eV Core-core repulsion = 23496.360934 eV Total energy + Delta-G solvation = -4129.360489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.07296 -39.89225 -39.56196 -37.72059 -35.77495 -34.99640 -34.38508 -32.53581 -31.88547 -30.57518 -29.44573 -26.24607 -25.18424 -24.98793 -24.50536 -22.92279 -21.02499 -20.10765 -19.10473 -18.55720 -17.73857 -17.17742 -17.09206 -16.75673 -16.36689 -16.02372 -15.60515 -15.23098 -15.02644 -14.68385 -14.37599 -14.19005 -13.99319 -13.35668 -13.26213 -12.93512 -12.80620 -12.60200 -12.46846 -11.79843 -11.64082 -11.62422 -11.36139 -11.13520 -11.05423 -11.00162 -10.79685 -10.26327 -10.09666 -10.04485 -9.96884 -9.39048 -9.21904 -9.19743 -9.03304 -8.55714 -8.25927 -7.45387 -6.24693 -4.05700 0.10505 0.93928 1.27681 1.34951 1.81628 2.69854 2.71192 3.26835 3.32216 3.37814 3.46682 3.70420 3.73086 4.08888 4.20094 4.26284 4.36355 4.44115 4.72945 4.94854 5.10268 5.10950 5.29315 5.39913 5.59253 5.62410 5.78480 5.84831 6.04518 6.16832 6.33444 6.46590 6.84242 6.91930 7.13072 7.41818 7.64183 7.72734 7.89429 8.03750 8.33460 8.54407 9.12846 9.37073 9.80751 10.75040 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.003987 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.189525 B = 7021.856082 C = 8638.981958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.044 3.956 3 Si 0.928 3.072 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.264 1.264 7 C -0.312 4.312 8 H 0.117 0.883 9 N -0.412 5.412 10 C 0.121 3.879 11 C -0.125 4.125 12 C 0.484 3.516 13 O -0.512 6.512 14 O -0.525 6.525 15 C 0.530 3.470 16 O -0.597 6.597 17 C 0.052 3.948 18 C -0.218 4.218 19 S 0.140 5.860 20 C 0.051 3.949 21 C 0.165 3.835 22 C 0.063 3.937 23 N -0.432 5.432 24 C 0.044 3.956 25 C 0.061 3.939 26 N -0.394 5.394 27 N -0.334 5.334 28 H 0.269 0.731 29 H 0.132 0.868 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.401 0.599 34 H 0.189 0.811 35 H 0.169 0.831 36 H 0.173 0.827 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.770 -1.281 -2.393 13.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.160 4.160 3 Si 0.755 3.245 4 H -0.201 1.201 5 H -0.220 1.220 6 H -0.188 1.188 7 C -0.441 4.441 8 H 0.134 0.866 9 N -0.128 5.128 10 C -0.003 4.003 11 C -0.164 4.164 12 C 0.326 3.674 13 O -0.399 6.399 14 O -0.337 6.337 15 C 0.316 3.684 16 O -0.483 6.483 17 C -0.085 4.085 18 C -0.360 4.360 19 S 0.395 5.605 20 C -0.225 4.225 21 C 0.023 3.977 22 C -0.099 4.099 23 N -0.146 5.146 24 C -0.116 4.116 25 C -0.101 4.101 26 N -0.109 5.109 27 N -0.048 5.048 28 H 0.080 0.920 29 H 0.149 0.851 30 H 0.082 0.918 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.259 0.741 34 H 0.206 0.794 35 H 0.186 0.814 36 H 0.190 0.810 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 12.864 -1.421 -3.137 13.317 hybrid contribution -1.041 0.732 0.847 1.529 sum 11.823 -0.690 -2.290 12.062 Atomic orbital electron populations 1.69704 1.06220 1.27715 1.47483 1.25566 0.95223 1.00082 0.95170 0.85892 0.79340 0.80682 0.78625 1.20134 1.21956 1.18823 1.20021 0.92747 0.81181 1.50171 0.86621 1.43353 1.26706 1.13448 1.29259 1.21489 0.88610 1.02994 0.87197 1.21867 0.94571 1.03765 0.96223 1.23723 0.91062 0.73115 0.79504 1.90711 1.28176 1.47589 1.73445 1.84588 1.44175 1.72086 1.32852 1.17469 0.84270 0.85671 0.80975 1.90665 1.56051 1.31499 1.70131 1.20857 0.98885 0.87894 1.00852 1.26896 1.00449 1.05976 1.02711 1.83284 1.22920 1.09891 1.44382 1.25668 0.98814 0.96043 1.01975 1.19591 0.92475 0.91135 0.94531 1.23577 0.90876 0.98639 0.96829 1.68433 1.27193 0.99737 1.19231 1.23863 0.97470 0.96479 0.93800 1.23937 0.91165 0.98208 0.96751 1.68636 1.26382 0.98443 1.17464 1.67699 1.01279 1.22136 1.13669 0.92018 0.85062 0.91759 0.88670 0.87781 0.74147 0.79432 0.81419 0.81017 0.80972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.83 10.94 55.50 0.61 -23.23 16 2 C 0.04 1.15 5.34 -17.45 -0.09 1.06 16 3 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.26 -5.72 7.11 56.52 0.40 -5.31 16 7 C -0.31 -8.00 7.65 -15.00 -0.11 -8.12 16 8 H 0.12 2.96 5.95 -52.48 -0.31 2.65 16 9 N -0.41 -10.42 2.52 -116.09 -0.29 -10.72 16 10 C 0.12 2.92 4.18 -4.04 -0.02 2.91 16 11 C -0.13 -2.49 6.09 -27.89 -0.17 -2.66 16 12 C 0.48 8.98 8.33 36.01 0.30 9.28 16 13 O -0.51 -11.06 16.74 -18.75 -0.31 -11.37 16 14 O -0.53 -7.56 13.42 -39.26 -0.53 -8.09 16 15 C 0.53 13.03 7.56 -12.60 -0.10 12.94 16 16 O -0.60 -15.41 16.34 5.23 0.09 -15.32 16 17 C 0.05 1.11 6.53 -84.59 -0.55 0.56 16 18 C -0.22 -3.67 10.64 30.08 0.32 -3.35 16 19 S 0.14 1.83 22.11 -107.50 -2.38 -0.55 16 20 C 0.05 0.88 7.39 -14.46 -0.11 0.77 16 21 C 0.16 2.56 6.75 -82.86 -0.56 2.00 16 22 C 0.06 0.78 10.78 -16.97 -0.18 0.60 16 23 N -0.43 -5.14 10.49 -12.73 -0.13 -5.27 16 24 C 0.04 0.45 11.22 -17.30 -0.19 0.26 16 25 C 0.06 0.75 11.22 -17.40 -0.20 0.56 16 26 N -0.39 -6.60 10.41 -9.66 -0.10 -6.70 16 27 N -0.33 -7.02 6.92 -7.89 -0.05 -7.08 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.13 3.48 5.41 -51.93 -0.28 3.20 16 30 H 0.06 1.67 7.49 -51.93 -0.39 1.28 16 31 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 32 H 0.10 1.97 8.14 -51.93 -0.42 1.54 16 33 H 0.40 3.82 9.10 45.56 0.41 4.23 16 34 H 0.19 2.87 8.02 -52.48 -0.42 2.45 16 35 H 0.17 1.59 7.28 -52.49 -0.38 1.21 16 36 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -34.54 348.39 -6.74 -41.28 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -2.20 Total: 9.17 kcal Atomic # 6 Polarization: 18.46 SS G_CDS: -1.66 Total: 16.80 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.03 Total: -53.00 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.76 Total: -34.79 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.38 Total: -0.55 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.54 -6.74 -41.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186549.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.404 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds