Wall clock time and date at job start Wed Apr 1 2020 04:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 119.99967 * 2 1 4 4 H 1.48509 * 109.46878 * 269.99910 * 3 2 1 5 5 H 1.48498 * 109.47117 * 29.99842 * 3 2 1 6 6 H 1.48500 * 109.47171 * 150.00392 * 3 2 1 7 7 C 1.38986 * 119.99742 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99396 * 182.47091 * 7 2 1 9 9 N 1.36933 * 120.00338 * 2.46791 * 7 2 1 10 10 C 1.46505 * 120.00201 * 313.13041 * 9 7 2 11 11 C 1.52991 * 109.46870 * 264.28123 * 10 9 7 12 12 C 1.50701 * 109.47016 * 179.97438 * 11 10 9 13 13 O 1.20830 * 120.00082 * 0.02562 * 12 11 10 14 14 O 1.34231 * 120.00412 * 179.97438 * 12 11 10 15 15 C 1.34781 * 120.00104 * 133.12598 * 9 7 2 16 16 O 1.21653 * 120.00184 * 185.24686 * 15 9 7 17 17 C 1.47250 * 119.99962 * 5.24526 * 15 9 7 18 18 C 1.36417 * 122.56875 * 174.43788 * 17 15 9 19 19 S 1.71011 * 108.98290 * 180.02562 * 18 17 15 20 20 C 1.75964 * 90.63367 * 359.97438 * 19 18 17 21 21 C 1.47894 * 125.21900 * 180.02562 * 20 19 18 22 22 C 1.39642 * 120.12189 * 359.74382 * 21 20 19 23 23 N 1.31956 * 119.84970 * 180.29718 * 22 21 20 24 24 C 1.32234 * 120.10967 * 359.96034 * 23 22 21 25 25 C 1.38462 * 120.24279 * 0.04408 * 24 23 22 26 26 N 1.31985 * 120.15356 * 359.97438 * 25 24 23 27 27 N 1.29788 * 109.56660 * 0.26557 * 20 19 18 28 28 H 0.96997 * 120.00233 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47079 * 24.28226 * 10 9 7 30 30 H 1.09002 * 109.46910 * 144.28192 * 10 9 7 31 31 H 1.08999 * 109.47354 * 299.99935 * 11 10 9 32 32 H 1.09002 * 109.47297 * 60.00306 * 11 10 9 33 33 H 0.96699 * 117.00610 * 180.02562 * 14 12 11 34 34 H 1.08005 * 125.50336 * 0.04103 * 18 17 15 35 35 H 1.08001 * 120.07457 * 0.25985 * 22 21 20 36 36 H 1.07990 * 119.87542 * 180.02562 * 24 23 22 37 37 H 1.08000 * 119.92066 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4002 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4402 0.6999 7 6 2.0090 -1.2037 -0.0005 8 1 3.0883 -1.2041 0.0398 9 7 1.3253 -2.3890 -0.0521 10 6 0.1742 -2.6096 0.8268 11 6 0.6260 -3.3630 2.0794 12 6 -0.5580 -3.5894 2.9838 13 8 -1.6512 -3.1895 2.6596 14 8 -0.3985 -4.2362 4.1492 15 6 1.7113 -3.3528 -0.9116 16 8 1.0487 -4.3666 -1.0262 17 6 2.9349 -3.1786 -1.7120 18 6 3.4343 -4.1628 -2.5138 19 16 4.8548 -3.5921 -3.2761 20 6 4.6921 -2.0408 -2.4615 21 6 5.6179 -0.8973 -2.6118 22 6 6.7298 -1.0014 -3.4501 23 7 7.5555 0.0202 -3.5757 24 6 7.3307 1.1405 -2.9102 25 6 6.2295 1.2483 -2.0779 26 7 5.3973 0.2326 -1.9445 27 7 3.6379 -2.0558 -1.7045 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2524 -1.6488 1.1149 30 1 -0.5775 -3.1977 0.3004 31 1 1.0525 -4.3238 1.7913 32 1 1.3777 -2.7749 2.6059 33 1 -1.1871 -4.3578 4.6954 34 1 3.0021 -5.1437 -2.6460 35 1 6.9140 -1.9162 -3.9938 36 1 8.0087 1.9744 -3.0162 37 1 6.0511 2.1656 -1.5365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608186549.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:38 Heat of formation + Delta-G solvation = -34.166737 kcal Electronic energy + Delta-G solvation = -27626.861618 eV Core-core repulsion = 23496.360934 eV Total energy + Delta-G solvation = -4130.500684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.04223 -41.45652 -41.04963 -39.37192 -37.24650 -36.83872 -35.36733 -33.80135 -33.57026 -32.33645 -30.72320 -27.56440 -26.97594 -26.47346 -25.52007 -24.35458 -22.43762 -21.69152 -20.73666 -19.98511 -19.22398 -18.39497 -18.16811 -18.02735 -17.60525 -17.54920 -17.12902 -16.81511 -16.34622 -16.22377 -16.01727 -15.71565 -15.32901 -14.81222 -14.63892 -14.37095 -14.28401 -14.04050 -13.81110 -13.58181 -13.11511 -12.90300 -12.83681 -12.61226 -12.56539 -12.52473 -12.37227 -12.02519 -11.91628 -11.66197 -11.12112 -11.07763 -10.85363 -10.38892 -10.27250 -10.11849 -9.54379 -9.28993 -8.19226 -6.05113 -0.97682 -0.07255 0.15598 0.16530 0.52197 1.18710 1.24588 1.44253 1.52498 1.61476 2.01540 2.38055 2.54245 2.65149 2.80295 3.00449 3.16413 3.27771 3.36792 3.51275 3.92834 3.98426 4.11777 4.19694 4.24267 4.28645 4.40771 4.47608 4.50342 4.70876 4.86058 5.03159 5.32218 5.42244 5.58274 5.75010 6.01455 6.22330 6.53887 6.65450 6.81677 7.00481 7.18996 7.47990 7.89434 8.80672 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.003987 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.189525 B = 7021.856082 C = 8638.981958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.003 4.003 3 Si 0.985 3.015 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.251 1.251 7 C -0.304 4.304 8 H 0.116 0.884 9 N -0.430 5.430 10 C 0.126 3.874 11 C -0.116 4.116 12 C 0.497 3.503 13 O -0.548 6.548 14 O -0.506 6.506 15 C 0.523 3.477 16 O -0.622 6.622 17 C 0.010 3.990 18 C -0.223 4.223 19 S 0.282 5.718 20 C 0.032 3.968 21 C 0.132 3.868 22 C 0.077 3.923 23 N -0.442 5.442 24 C 0.070 3.930 25 C 0.050 3.950 26 N -0.444 5.444 27 N -0.385 5.385 28 H 0.266 0.734 29 H 0.108 0.892 30 H 0.034 0.966 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.427 0.573 34 H 0.200 0.800 35 H 0.195 0.805 36 H 0.218 0.782 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.517 -1.253 -3.384 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.203 4.203 3 Si 0.810 3.190 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.175 1.175 7 C -0.433 4.433 8 H 0.133 0.867 9 N -0.145 5.145 10 C 0.003 3.997 11 C -0.155 4.155 12 C 0.340 3.660 13 O -0.438 6.438 14 O -0.320 6.320 15 C 0.311 3.689 16 O -0.510 6.510 17 C -0.128 4.128 18 C -0.367 4.367 19 S 0.539 5.461 20 C -0.244 4.244 21 C -0.009 4.009 22 C -0.084 4.084 23 N -0.156 5.156 24 C -0.091 4.091 25 C -0.112 4.112 26 N -0.160 5.160 27 N -0.099 5.099 28 H 0.076 0.924 29 H 0.126 0.874 30 H 0.052 0.948 31 H 0.119 0.881 32 H 0.133 0.867 33 H 0.289 0.711 34 H 0.217 0.783 35 H 0.211 0.789 36 H 0.235 0.765 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 16.642 -1.435 -4.108 17.201 hybrid contribution -1.996 0.634 1.036 2.337 sum 14.645 -0.801 -3.072 14.986 Atomic orbital electron populations 1.69860 1.07534 1.27932 1.49786 1.26299 0.95789 1.02877 0.95318 0.85019 0.78647 0.77152 0.78179 1.20680 1.21942 1.17451 1.20108 0.92723 0.81320 1.49104 0.86655 1.43533 1.26910 1.13881 1.30226 1.21208 0.88247 1.01692 0.88588 1.21605 0.95354 1.03538 0.94992 1.23259 0.89746 0.72737 0.80209 1.90710 1.29254 1.49310 1.74538 1.84497 1.45644 1.70557 1.31309 1.18017 0.85297 0.84834 0.80761 1.90610 1.57312 1.32121 1.70960 1.20414 0.99122 0.90005 1.03226 1.27253 1.02097 1.05772 1.01536 1.82670 1.18323 1.04948 1.40172 1.26045 0.98045 0.98545 1.01782 1.19675 0.93709 0.90887 0.96599 1.23847 0.89406 0.99657 0.95519 1.68585 1.27035 1.00228 1.19737 1.24548 0.96620 0.96821 0.91097 1.24431 0.91302 0.98039 0.97447 1.68488 1.28592 0.99925 1.19034 1.67531 1.03132 1.22868 1.16377 0.92445 0.87437 0.94769 0.88099 0.86706 0.71115 0.78281 0.78867 0.76533 0.78829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.46 10.94 21.67 0.24 -52.22 16 2 C 0.00 -0.14 5.34 84.94 0.45 0.31 16 3 Si 0.98 44.13 29.55 68.60 2.03 46.16 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.25 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.30 -16.24 7.65 84.08 0.64 -15.60 16 8 H 0.12 6.14 5.95 -2.91 -0.02 6.12 16 9 N -0.43 -22.89 2.52 -639.43 -1.61 -24.50 16 10 C 0.13 6.53 4.18 86.38 0.36 6.89 16 11 C -0.12 -4.78 6.09 29.85 0.18 -4.59 16 12 C 0.50 18.66 8.33 71.24 0.59 19.25 16 13 O -0.55 -24.43 16.74 21.95 0.37 -24.06 16 14 O -0.51 -13.82 13.42 -51.42 -0.69 -14.51 16 15 C 0.52 26.93 7.56 86.61 0.65 27.58 16 16 O -0.62 -33.57 16.34 -4.20 -0.07 -33.63 16 17 C 0.01 0.43 6.53 40.99 0.27 0.69 16 18 C -0.22 -7.29 10.64 67.39 0.72 -6.57 16 19 S 0.28 6.48 22.11 -56.49 -1.25 5.23 16 20 C 0.03 1.05 7.39 87.55 0.65 1.70 16 21 C 0.13 3.89 6.75 41.86 0.28 4.17 16 22 C 0.08 1.65 10.78 85.01 0.92 2.57 16 23 N -0.44 -8.83 10.49 -194.20 -2.04 -10.87 16 24 C 0.07 1.15 11.22 84.69 0.95 2.10 16 25 C 0.05 1.11 11.22 84.72 0.95 2.06 16 26 N -0.44 -14.41 10.41 -184.46 -1.92 -16.33 16 27 N -0.38 -16.39 6.92 -178.88 -1.24 -17.62 16 28 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 29 H 0.11 6.10 5.41 -2.39 -0.01 6.09 16 30 H 0.03 1.91 7.49 -2.39 -0.02 1.89 16 31 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 32 H 0.11 4.44 8.14 -2.39 -0.02 4.42 16 33 H 0.43 7.22 9.10 -74.06 -0.67 6.55 16 34 H 0.20 5.84 8.02 -2.91 -0.02 5.82 16 35 H 0.19 2.83 7.28 -2.91 -0.02 2.81 16 36 H 0.22 1.45 8.06 -2.92 -0.02 1.43 16 37 H 0.19 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -81.59 348.39 1.94 -79.66 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.50 Total: 22.15 kcal Atomic # 6 Polarization: 32.94 SS G_CDS: 7.62 Total: 40.55 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -6.57 Total: -121.54 kcal Atomic # 8 Polarization: -71.81 SS G_CDS: -0.39 Total: -72.21 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 6.48 SS G_CDS: -1.25 Total: 5.23 kcal Total: -81.59 1.94 -79.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608186549.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.491 kcal (2) G-P(sol) polarization free energy of solvation -81.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds