Wall clock time and date at job start Wed Apr 1 2020 05:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47612 * 2 1 4 4 N 1.46904 * 109.46742 * 120.00252 * 2 1 3 5 5 C 1.46904 * 110.99785 * 274.99324 * 4 2 1 6 6 C 1.50698 * 109.46976 * 180.02562 * 5 4 2 7 7 O 1.21293 * 119.99980 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99779 * 180.02562 * 6 5 4 9 9 C 1.37094 * 119.99580 * 180.02562 * 8 6 5 10 10 H 1.07995 * 120.00560 * 0.02562 * 9 8 6 11 11 C 1.38951 * 119.99789 * 179.97438 * 9 8 6 12 12 N 1.31414 * 120.00411 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00019 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47594 * 89.99456 * 13 11 9 15 15 H 1.48501 * 109.47167 * 210.00033 * 13 11 9 16 16 H 1.48502 * 109.47066 * 329.99451 * 13 11 9 17 17 C 1.50709 * 109.46834 * 239.99757 * 2 1 3 18 18 C 1.38164 * 120.01993 * 264.99944 * 17 2 1 19 19 C 1.38349 * 120.04000 * 180.02562 * 18 17 2 20 20 Cl 1.73597 * 119.95734 * 180.02562 * 19 18 17 21 21 C 1.38384 * 120.08266 * 359.97438 * 19 18 17 22 22 C 1.38126 * 120.04585 * 0.02562 * 21 19 18 23 23 C 1.38695 * 120.01617 * 85.28040 * 17 2 1 24 24 O 1.35921 * 120.05059 * 359.97438 * 23 17 2 25 25 C 1.42892 * 117.00534 * 180.25157 * 24 23 17 26 26 F 1.39904 * 109.47001 * 300.00210 * 25 24 23 27 27 F 1.39907 * 109.47234 * 59.99410 * 25 24 23 28 28 H 1.08996 * 109.46822 * 300.00040 * 1 2 3 29 29 H 1.09000 * 109.46748 * 60.00235 * 1 2 3 30 30 H 1.09000 * 109.47307 * 179.97438 * 1 2 3 31 31 H 1.00900 * 111.00284 * 38.95554 * 4 2 1 32 32 H 1.08997 * 109.47331 * 300.00634 * 5 4 2 33 33 H 1.08995 * 109.46639 * 60.00499 * 5 4 2 34 34 H 0.96994 * 120.00122 * 0.02562 * 8 6 5 35 35 H 0.97000 * 120.00188 * 179.97438 * 12 11 9 36 36 H 1.07998 * 119.98371 * 0.02562 * 18 17 2 37 37 H 1.07999 * 119.97597 * 179.97438 * 21 19 18 38 38 H 1.08002 * 120.01935 * 179.97438 * 22 21 19 39 39 H 1.08996 * 109.47681 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5885 -0.5216 3.5557 7 8 2.8695 -1.6984 3.4697 8 7 2.7287 0.1205 4.7324 9 6 3.1894 -0.5563 5.8319 10 1 3.4405 -1.6039 5.7552 11 6 3.3345 0.1057 7.0449 12 7 3.7757 -0.5431 8.0991 13 14 2.9010 1.9179 7.1776 14 1 1.4718 2.0587 7.5551 15 1 3.7520 2.5559 8.2139 16 1 3.1349 2.5798 5.8690 17 6 2.0323 -0.7105 -1.2305 18 6 2.3610 -2.0511 -1.1689 19 6 2.8227 -2.7036 -2.2981 20 17 3.2344 -4.3881 -2.2184 21 6 2.9556 -2.0154 -3.4913 22 6 2.6280 -0.6751 -3.5569 23 6 2.1704 -0.0176 -2.4240 24 8 1.8525 1.3025 -2.4853 25 6 2.0142 1.9508 -3.7484 26 9 3.3525 1.8676 -4.1474 27 9 1.2038 1.3243 -4.7014 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.4495 -1.4980 1.4100 32 1 2.7589 1.0461 2.1182 33 1 1.0872 0.6163 2.5525 34 1 2.5036 1.0615 4.8012 35 1 3.8773 -0.0808 8.9458 36 1 2.2575 -2.5899 -0.2387 37 1 3.3165 -2.5264 -4.3717 38 1 2.7323 -0.1383 -4.4882 39 1 1.7258 2.9981 -3.6589 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001616661191.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:31 Heat of formation + Delta-G solvation = -153.437011 kcal Electronic energy + Delta-G solvation = -27922.764017 eV Core-core repulsion = 23334.358493 eV Total energy + Delta-G solvation = -4588.405524 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.77134 -47.75698 -40.60812 -38.59406 -37.99453 -36.77980 -35.98726 -33.96525 -31.93576 -31.57119 -30.48510 -29.25657 -26.70856 -26.37312 -24.32988 -23.65012 -22.48862 -20.95628 -19.53763 -19.23866 -18.61539 -18.32929 -18.28705 -16.89381 -16.52993 -15.79951 -15.68086 -15.34968 -15.07127 -14.85768 -14.49234 -14.38748 -14.19995 -14.09346 -13.97017 -13.57951 -13.47323 -13.35834 -13.13981 -13.07321 -12.82393 -12.56550 -12.32389 -12.16305 -11.98397 -11.72819 -11.40007 -11.34924 -11.17263 -11.10784 -10.81617 -10.59758 -9.97467 -9.57209 -9.15610 -8.63458 -8.51785 -8.20888 -8.15698 -6.30845 -3.82300 0.88850 0.99702 2.00165 2.18730 3.02544 3.04128 3.06235 3.14896 3.28847 3.73946 3.85949 3.94399 4.10315 4.20249 4.38485 4.53453 4.73832 4.81513 4.94006 5.05570 5.10248 5.21471 5.30561 5.45993 5.51140 5.59074 5.66742 5.76933 5.82880 5.87883 5.92016 6.01842 6.06715 6.29475 6.64629 7.04382 7.49565 7.58222 8.14740 8.59801 8.95261 9.42584 9.82600 10.82312 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.012157 B = 0.002694 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.575542 B =10391.012707 C =12069.162715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.128 3.872 3 H 0.095 0.905 4 N -0.663 5.663 5 C 0.049 3.951 6 C 0.450 3.550 7 O -0.563 6.563 8 N -0.590 5.590 9 C -0.305 4.305 10 H 0.120 0.880 11 C 0.041 3.959 12 N -0.882 5.882 13 Si 0.880 3.120 14 H -0.271 1.271 15 H -0.277 1.277 16 H -0.269 1.269 17 C -0.067 4.067 18 C -0.050 4.050 19 C -0.058 4.058 20 Cl -0.067 7.067 21 C -0.080 4.080 22 C -0.181 4.181 23 C 0.109 3.891 24 O -0.314 6.314 25 C 0.411 3.589 26 F -0.198 7.198 27 F -0.199 7.199 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.353 0.647 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.153 0.847 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.023 6.707 -26.705 28.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.017 3.983 3 H 0.113 0.887 4 N -0.295 5.295 5 C -0.084 4.084 6 C 0.236 3.764 7 O -0.445 6.445 8 N -0.230 5.230 9 C -0.433 4.433 10 H 0.137 0.863 11 C -0.162 4.162 12 N -0.522 5.522 13 Si 0.706 3.294 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.195 1.195 17 C -0.068 4.068 18 C -0.069 4.069 19 C -0.084 4.084 20 Cl -0.038 7.038 21 C -0.099 4.099 22 C -0.200 4.200 23 C 0.066 3.934 24 O -0.232 6.232 25 C 0.320 3.680 26 F -0.180 7.180 27 F -0.181 7.181 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.173 0.827 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.203 0.797 35 H 0.084 0.916 36 H 0.171 0.829 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -6.120 5.926 -26.543 27.877 hybrid contribution -0.966 1.389 0.147 1.698 sum -7.086 7.316 -26.396 28.293 Atomic orbital electron populations 1.22473 0.95868 1.02671 1.02570 1.20289 0.92790 0.97535 0.87642 0.88748 1.60155 1.57706 1.09217 1.02415 1.21728 1.00131 0.95783 0.90714 1.19682 0.84790 0.88265 0.83696 1.90571 1.53757 1.16003 1.84187 1.42197 1.60159 1.11080 1.09555 1.19433 1.40256 0.97978 0.85664 0.86264 1.25040 0.97484 0.98387 0.95259 1.69622 1.45106 1.36596 1.00834 0.86671 0.79239 0.84984 0.78491 1.19677 1.20189 1.19462 1.19102 1.02169 0.93012 0.92545 1.20885 0.95225 0.92987 0.97825 1.20892 1.05508 0.86454 0.95575 1.98377 1.92234 1.14530 1.98647 1.20783 0.98839 0.93361 0.96877 1.21355 1.04923 0.95832 0.97878 1.18647 0.98365 0.81823 0.94611 1.86636 1.82213 1.22273 1.32060 1.23396 0.73671 0.95908 0.74994 1.93111 1.36850 1.97178 1.90818 1.93102 1.73323 1.85455 1.66234 0.91847 0.91804 0.92043 0.82687 0.89360 0.93461 0.79703 0.91618 0.82917 0.84583 0.84316 0.80163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 9.14 37.16 0.34 -1.41 16 2 C 0.13 1.50 2.53 -68.86 -0.17 1.33 16 3 H 0.09 1.08 7.34 -51.93 -0.38 0.70 16 4 N -0.66 -9.80 4.88 -109.21 -0.53 -10.33 16 5 C 0.05 0.78 5.97 -4.97 -0.03 0.75 16 6 C 0.45 10.00 7.82 -10.99 -0.09 9.92 16 7 O -0.56 -14.87 15.78 5.55 0.09 -14.78 16 8 N -0.59 -13.88 5.09 -10.97 -0.06 -13.93 16 9 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 10 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 11 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 12 N -0.88 -25.74 13.96 55.50 0.77 -24.97 16 13 Si 0.88 19.21 27.74 -169.99 -4.71 14.50 16 14 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 15 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 17 C -0.07 -0.80 5.07 -104.48 -0.53 -1.33 16 18 C -0.05 -0.64 9.10 -39.57 -0.36 -1.00 16 19 C -0.06 -0.68 6.32 -39.49 -0.25 -0.93 16 20 Cl -0.07 -0.78 28.95 -51.86 -1.50 -2.28 16 21 C -0.08 -0.83 9.82 -39.57 -0.39 -1.22 16 22 C -0.18 -1.87 8.26 -39.43 -0.33 -2.20 16 23 C 0.11 1.20 6.46 -39.22 -0.25 0.95 16 24 O -0.31 -2.85 9.56 -19.49 -0.19 -3.03 16 25 C 0.41 2.52 5.98 101.05 0.60 3.13 16 26 F -0.20 -1.59 15.58 2.25 0.04 -1.55 16 27 F -0.20 -1.49 15.58 2.25 0.04 -1.45 16 28 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 31 H 0.35 5.33 7.60 -39.29 -0.30 5.03 16 32 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 33 H 0.05 0.64 7.44 -51.93 -0.39 0.25 16 34 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.15 2.05 6.89 -52.49 -0.36 1.69 16 37 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.14 1.27 5.10 -52.49 -0.27 1.00 16 39 H 0.18 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 353.76 15.07 5.33 5.33 Total: -1.00 -33.38 353.76 -6.41 -39.79 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -3.98 Total: 12.43 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.70 Total: 0.28 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.19 Total: -49.23 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.10 Total: -17.81 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.07 Total: -3.01 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -4.71 Total: 14.50 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.38 -6.41 -39.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001616661191.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.646 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds