Wall clock time and date at job start Wed Apr 1 2020 05:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47612 * 2 1 4 4 N 1.46904 * 109.46742 * 120.00252 * 2 1 3 5 5 C 1.46904 * 110.99785 * 274.99324 * 4 2 1 6 6 C 1.50698 * 109.46976 * 180.02562 * 5 4 2 7 7 O 1.21293 * 119.99980 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99779 * 180.02562 * 6 5 4 9 9 C 1.37094 * 119.99580 * 180.02562 * 8 6 5 10 10 H 1.07995 * 120.00560 * 0.02562 * 9 8 6 11 11 C 1.38951 * 119.99789 * 179.97438 * 9 8 6 12 12 N 1.31414 * 120.00411 * 179.97438 * 11 9 8 13 13 Si 1.86798 * 120.00019 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47594 * 89.99456 * 13 11 9 15 15 H 1.48501 * 109.47167 * 210.00033 * 13 11 9 16 16 H 1.48502 * 109.47066 * 329.99451 * 13 11 9 17 17 C 1.50709 * 109.46834 * 239.99757 * 2 1 3 18 18 C 1.38164 * 120.01993 * 264.99944 * 17 2 1 19 19 C 1.38349 * 120.04000 * 180.02562 * 18 17 2 20 20 Cl 1.73597 * 119.95734 * 180.02562 * 19 18 17 21 21 C 1.38384 * 120.08266 * 359.97438 * 19 18 17 22 22 C 1.38126 * 120.04585 * 0.02562 * 21 19 18 23 23 C 1.38695 * 120.01617 * 85.28040 * 17 2 1 24 24 O 1.35921 * 120.05059 * 359.97438 * 23 17 2 25 25 C 1.42892 * 117.00534 * 180.25157 * 24 23 17 26 26 F 1.39904 * 109.47001 * 300.00210 * 25 24 23 27 27 F 1.39907 * 109.47234 * 59.99410 * 25 24 23 28 28 H 1.08996 * 109.46822 * 300.00040 * 1 2 3 29 29 H 1.09000 * 109.46748 * 60.00235 * 1 2 3 30 30 H 1.09000 * 109.47307 * 179.97438 * 1 2 3 31 31 H 1.00900 * 111.00284 * 38.95554 * 4 2 1 32 32 H 1.08997 * 109.47331 * 300.00634 * 5 4 2 33 33 H 1.08995 * 109.46639 * 60.00499 * 5 4 2 34 34 H 0.96994 * 120.00122 * 0.02562 * 8 6 5 35 35 H 0.97000 * 120.00188 * 179.97438 * 12 11 9 36 36 H 1.07998 * 119.98371 * 0.02562 * 18 17 2 37 37 H 1.07999 * 119.97597 * 179.97438 * 21 19 18 38 38 H 1.08002 * 120.01935 * 179.97438 * 22 21 19 39 39 H 1.08996 * 109.47681 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5885 -0.5216 3.5557 7 8 2.8695 -1.6984 3.4697 8 7 2.7287 0.1205 4.7324 9 6 3.1894 -0.5563 5.8319 10 1 3.4405 -1.6039 5.7552 11 6 3.3345 0.1057 7.0449 12 7 3.7757 -0.5431 8.0991 13 14 2.9010 1.9179 7.1776 14 1 1.4718 2.0587 7.5551 15 1 3.7520 2.5559 8.2139 16 1 3.1349 2.5798 5.8690 17 6 2.0323 -0.7105 -1.2305 18 6 2.3610 -2.0511 -1.1689 19 6 2.8227 -2.7036 -2.2981 20 17 3.2344 -4.3881 -2.2184 21 6 2.9556 -2.0154 -3.4913 22 6 2.6280 -0.6751 -3.5569 23 6 2.1704 -0.0176 -2.4240 24 8 1.8525 1.3025 -2.4853 25 6 2.0142 1.9508 -3.7484 26 9 3.3525 1.8676 -4.1474 27 9 1.2038 1.3243 -4.7014 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.4495 -1.4980 1.4100 32 1 2.7589 1.0461 2.1182 33 1 1.0872 0.6163 2.5525 34 1 2.5036 1.0615 4.8012 35 1 3.8773 -0.0808 8.9458 36 1 2.2575 -2.5899 -0.2387 37 1 3.3165 -2.5264 -4.3717 38 1 2.7323 -0.1383 -4.4882 39 1 1.7258 2.9981 -3.6589 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001616661191.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:30 Heat of formation + Delta-G solvation = -177.483942 kcal Electronic energy + Delta-G solvation = -27923.806771 eV Core-core repulsion = 23334.358493 eV Total energy + Delta-G solvation = -4589.448278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.28372 -48.27869 -41.41462 -40.27733 -38.81205 -37.82675 -36.95414 -35.94124 -33.75305 -32.88775 -31.31733 -30.15987 -28.11586 -27.03699 -25.75435 -24.75874 -23.32810 -21.84079 -21.29861 -20.39131 -19.91395 -19.09875 -18.85355 -18.05456 -17.45449 -17.09845 -16.86093 -16.49589 -16.34612 -15.85056 -15.67876 -15.17763 -15.04774 -15.02945 -14.92590 -14.66919 -14.62253 -14.45869 -14.16764 -14.03679 -13.91014 -13.86131 -13.64121 -13.24721 -13.05036 -12.81705 -12.74006 -12.39799 -12.30105 -12.20936 -11.96966 -11.96717 -11.68745 -11.49177 -10.43381 -10.23153 -10.02622 -9.44260 -9.25885 -8.39679 -6.00613 0.03643 0.13485 1.13644 1.31831 1.37232 1.46339 1.59844 1.98247 2.24852 2.42220 2.57937 2.69906 3.17028 3.32297 3.48801 3.63537 3.71920 3.72718 3.97274 4.08392 4.13909 4.19536 4.29557 4.43952 4.46469 4.58921 4.66149 4.75219 4.90714 4.97558 5.03441 5.17703 5.24837 5.40171 5.54869 5.86886 5.92489 6.05570 6.34366 6.61471 6.90116 7.41836 7.98843 8.78142 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.012157 B = 0.002694 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.575542 B =10391.012707 C =12069.162715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.134 3.866 3 H 0.105 0.895 4 N -0.681 5.681 5 C 0.064 3.936 6 C 0.449 3.551 7 O -0.613 6.613 8 N -0.591 5.591 9 C -0.328 4.328 10 H 0.054 0.946 11 C -0.017 4.017 12 N -0.936 5.936 13 Si 0.966 3.034 14 H -0.256 1.256 15 H -0.277 1.277 16 H -0.229 1.229 17 C -0.079 4.079 18 C -0.065 4.065 19 C -0.070 4.070 20 Cl -0.073 7.073 21 C -0.078 4.078 22 C -0.182 4.182 23 C 0.111 3.889 24 O -0.317 6.317 25 C 0.404 3.596 26 F -0.210 7.210 27 F -0.207 7.207 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.347 0.653 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.390 0.610 35 H 0.279 0.721 36 H 0.136 0.864 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.390 10.781 -28.806 31.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.024 3.976 3 H 0.123 0.877 4 N -0.313 5.313 5 C -0.068 4.068 6 C 0.237 3.763 7 O -0.498 6.498 8 N -0.233 5.233 9 C -0.457 4.457 10 H 0.072 0.928 11 C -0.215 4.215 12 N -0.577 5.577 13 Si 0.786 3.214 14 H -0.180 1.180 15 H -0.202 1.202 16 H -0.153 1.153 17 C -0.081 4.081 18 C -0.084 4.084 19 C -0.097 4.097 20 Cl -0.044 7.044 21 C -0.096 4.096 22 C -0.201 4.201 23 C 0.067 3.933 24 O -0.235 6.235 25 C 0.315 3.685 26 F -0.192 7.192 27 F -0.189 7.189 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.167 0.833 32 H 0.131 0.869 33 H 0.102 0.898 34 H 0.226 0.774 35 H 0.088 0.912 36 H 0.154 0.846 37 H 0.173 0.827 38 H 0.170 0.830 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -7.499 10.017 -28.687 31.298 hybrid contribution -0.510 0.003 0.701 0.867 sum -8.009 10.020 -27.986 30.786 Atomic orbital electron populations 1.22405 0.94307 1.02642 1.03537 1.20315 0.93948 0.97375 0.85928 0.87728 1.60118 1.58726 1.09408 1.03042 1.21647 1.02145 0.95245 0.87768 1.20988 0.82489 0.87954 0.84896 1.90553 1.55241 1.18752 1.85217 1.42011 1.60629 1.11850 1.08770 1.19004 1.42383 0.96054 0.88299 0.92791 1.26139 0.96407 1.05096 0.93844 1.69812 1.46417 1.39669 1.01824 0.85352 0.79402 0.76406 0.80274 1.18034 1.20213 1.15265 1.19154 1.02789 0.92828 0.93316 1.20822 0.96388 0.93660 0.97540 1.20987 1.06306 0.86342 0.96056 1.98370 1.92324 1.15029 1.98687 1.21024 0.98088 0.93562 0.96941 1.21557 1.04460 0.95779 0.98313 1.18676 0.97564 0.82839 0.94199 1.86637 1.81899 1.21010 1.33946 1.24318 0.72929 0.97522 0.73683 1.93089 1.37965 1.97245 1.90861 1.93086 1.73472 1.85852 1.66522 0.91030 0.90548 0.92654 0.83338 0.86851 0.89833 0.77418 0.91187 0.84610 0.82657 0.83026 0.74897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 9.14 71.98 0.66 -2.26 16 2 C 0.13 2.84 2.53 44.17 0.11 2.95 16 3 H 0.10 2.02 7.34 -2.39 -0.02 2.00 16 4 N -0.68 -19.35 4.88 -499.45 -2.44 -21.79 16 5 C 0.06 1.86 5.97 85.56 0.51 2.37 16 6 C 0.45 19.91 7.82 87.66 0.69 20.59 16 7 O -0.61 -33.77 15.78 -3.07 -0.05 -33.82 16 8 N -0.59 -27.48 5.09 -306.99 -1.56 -29.05 16 9 C -0.33 -19.21 10.16 84.04 0.85 -18.36 16 10 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 11 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 12 N -0.94 -56.68 13.96 21.66 0.30 -56.38 16 13 Si 0.97 38.37 27.74 68.60 1.90 40.27 16 14 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 15 H -0.28 -11.00 7.11 99.48 0.71 -10.30 16 16 H -0.23 -7.59 6.52 99.48 0.65 -6.94 16 17 C -0.08 -1.81 5.07 -19.77 -0.10 -1.91 16 18 C -0.07 -1.66 9.10 22.28 0.20 -1.46 16 19 C -0.07 -1.66 6.32 22.33 0.14 -1.51 16 20 Cl -0.07 -1.73 28.95 -2.72 -0.08 -1.81 16 21 C -0.08 -1.53 9.82 22.28 0.22 -1.31 16 22 C -0.18 -3.44 8.26 22.36 0.18 -3.25 16 23 C 0.11 2.22 6.46 22.50 0.15 2.37 16 24 O -0.32 -4.72 9.56 -92.66 -0.89 -5.61 16 25 C 0.40 3.55 5.98 113.37 0.68 4.22 16 26 F -0.21 -2.78 15.58 44.97 0.70 -2.08 16 27 F -0.21 -2.49 15.58 44.97 0.70 -1.79 16 28 H 0.07 1.11 7.45 -2.39 -0.02 1.09 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 31 H 0.35 10.52 7.60 -89.69 -0.68 9.84 16 32 H 0.11 2.81 8.05 -2.39 -0.02 2.79 16 33 H 0.08 1.89 7.44 -2.39 -0.02 1.87 16 34 H 0.39 14.84 5.76 -92.71 -0.53 14.31 16 35 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.14 3.85 6.89 -2.91 -0.02 3.83 16 37 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 38 H 0.15 2.42 5.10 -2.91 -0.01 2.41 16 39 H 0.24 -0.52 8.14 -2.39 -0.02 -0.54 16 Total: -1.00 -78.93 353.76 3.22 -75.71 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: -0.13 Total: 34.32 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 4.76 Total: 2.00 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -3.70 Total: -107.21 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -0.93 Total: -39.42 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 1.40 Total: -3.87 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 1.90 Total: 40.27 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.81 kcal Total: -78.93 3.22 -75.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001616661191.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.773 kcal (2) G-P(sol) polarization free energy of solvation -78.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds