Wall clock time and date at job start Wed Apr 1 2020 05:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39025 * 120.00103 * 2 1 4 4 N 1.32351 * 119.64502 * 0.24040 * 3 2 1 5 5 C 1.31890 * 121.94779 * 180.24464 * 4 3 2 6 6 C 1.37991 * 121.00055 * 359.77927 * 5 4 3 7 7 C 1.39980 * 119.17193 * 359.97438 * 6 5 4 8 8 C 1.48153 * 120.88162 * 180.02562 * 7 6 5 9 9 O 1.21515 * 120.00188 * 179.97438 * 8 7 6 10 10 N 1.34780 * 120.00239 * 359.97427 * 8 7 6 11 11 C 1.46497 * 120.00186 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47380 * 325.00631 * 11 10 8 13 13 C 1.50700 * 109.47478 * 204.99778 * 11 10 8 14 14 H 1.08007 * 119.99733 * 0.02562 * 13 11 10 15 15 C 1.37876 * 120.00506 * 180.02562 * 13 11 10 16 16 N 1.31516 * 119.99380 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00188 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47037 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47309 * 120.00081 * 17 15 13 20 20 H 1.48497 * 109.46944 * 239.99968 * 17 15 13 21 21 C 1.53005 * 109.46753 * 85.00083 * 11 10 8 22 22 F 1.39906 * 109.46997 * 60.00215 * 21 11 10 23 23 F 1.39898 * 109.47205 * 179.97438 * 21 11 10 24 24 F 1.39895 * 109.47489 * 299.99944 * 21 11 10 25 25 C 1.39077 * 119.64919 * 180.02562 * 3 2 1 26 26 N 1.48029 * 120.52810 * 0.02562 * 25 3 2 27 27 O 1.21803 * 119.99705 * 269.71873 * 26 25 3 28 28 O 1.21799 * 120.00092 * 89.44769 * 26 25 3 29 29 H 1.08994 * 109.47110 * 60.00161 * 1 2 3 30 30 H 1.09002 * 109.46671 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46595 * 299.99753 * 1 2 3 32 32 H 0.97004 * 120.00030 * 179.97438 * 2 1 3 33 33 H 1.08002 * 119.49594 * 179.75346 * 5 4 3 34 34 H 1.07993 * 120.41432 * 180.02562 * 6 5 4 35 35 H 0.97003 * 119.99588 * 0.02562 * 10 8 7 36 36 H 0.97007 * 119.99204 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2040 0.0000 4 7 1.4914 2.3461 0.0048 5 6 2.1044 3.5138 0.0003 6 6 3.4820 3.5933 -0.0053 7 6 4.2336 2.4124 -0.0055 8 6 5.7145 2.4536 -0.0107 9 8 6.3512 1.4186 -0.0104 10 7 6.3558 3.6391 -0.0159 11 6 7.8201 3.6798 -0.0206 12 1 8.2086 2.8500 0.5698 13 6 8.2884 4.9826 0.5748 14 1 7.5672 5.7076 0.9224 15 6 9.6374 5.2491 0.6759 16 7 10.5155 4.3664 0.2522 17 14 10.2178 6.8637 1.4146 18 1 9.0409 7.6780 1.8109 19 1 11.0551 6.5886 2.6097 20 1 11.0186 7.6081 0.4098 21 6 8.3289 3.5644 -1.4590 22 9 7.8303 4.6295 -2.2168 23 9 9.7273 3.6039 -1.4636 24 9 7.8943 2.3551 -2.0118 25 6 3.5509 1.1954 -0.0005 26 7 4.2950 -0.0842 -0.0017 27 8 4.6060 -0.6088 1.0527 28 8 4.5919 -0.6151 -1.0569 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.9500 -0.8401 0.0004 33 1 1.5192 4.4216 0.0005 34 1 3.9741 4.5546 -0.0085 35 1 5.8475 4.4653 -0.0159 36 1 11.4646 4.5541 0.3230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645009909.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:35 Heat of formation + Delta-G solvation = -116.532450 kcal Electronic energy + Delta-G solvation = -31919.838236 eV Core-core repulsion = 26801.156295 eV Total energy + Delta-G solvation = -5118.681941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.46892 -46.12282 -45.72565 -42.15518 -40.63418 -39.19679 -36.36209 -36.18349 -35.06472 -33.38383 -32.74729 -31.24109 -28.74074 -26.98940 -26.72792 -24.74701 -24.07444 -23.02265 -21.70878 -20.40343 -19.52380 -18.69975 -18.50908 -18.15856 -17.27948 -16.94849 -16.78605 -16.69291 -16.23251 -15.85017 -15.49097 -15.26464 -14.96352 -14.80303 -14.56175 -14.33261 -13.59904 -13.44810 -13.16582 -13.03636 -12.65601 -12.60662 -12.51275 -12.40245 -12.11364 -11.93244 -11.39904 -11.31871 -11.17282 -11.03420 -10.96396 -10.92061 -10.79711 -10.59624 -10.49360 -10.37427 -9.82284 -9.78253 -8.88041 -8.58690 -8.50415 -6.35170 -4.61301 0.06621 0.57198 0.78324 1.47453 2.40855 2.74439 3.09586 3.11798 3.19850 3.23130 3.38105 3.89115 4.09606 4.20633 4.28671 4.40298 4.45733 4.70617 4.79101 4.81707 5.11386 5.17026 5.35631 5.37280 5.66054 5.68069 5.72917 6.03947 6.29055 6.44983 6.60693 6.68254 6.79252 7.25053 7.37371 7.49561 7.83796 7.87968 8.25112 8.44399 9.07122 10.56351 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.003541 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.235400 B = 7906.087800 C = 8526.103563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.721 5.721 3 C 0.449 3.551 4 N -0.512 5.512 5 C 0.186 3.814 6 C -0.196 4.196 7 C 0.016 3.984 8 C 0.535 3.465 9 O -0.506 6.506 10 N -0.688 5.688 11 C 0.244 3.756 12 H 0.090 0.910 13 C -0.556 4.556 14 H 0.080 0.920 15 C 0.066 3.934 16 N -0.836 5.836 17 Si 0.919 3.081 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.279 1.279 21 C 0.417 3.583 22 F -0.208 7.208 23 F -0.133 7.133 24 F -0.215 7.215 25 C -0.109 4.109 26 N 0.039 4.961 27 O -0.134 6.134 28 O -0.132 6.132 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.412 0.588 33 H 0.183 0.817 34 H 0.161 0.839 35 H 0.402 0.598 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.329 -1.013 -0.016 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.352 5.352 3 C 0.210 3.790 4 N -0.231 5.231 5 C 0.027 3.973 6 C -0.219 4.219 7 C 0.004 3.996 8 C 0.318 3.682 9 O -0.381 6.381 10 N -0.338 5.338 11 C 0.139 3.861 12 H 0.108 0.892 13 C -0.593 4.593 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.468 5.468 17 Si 0.745 3.255 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.205 1.205 21 C 0.361 3.639 22 F -0.190 7.190 23 F -0.114 7.114 24 F -0.197 7.197 25 C -0.199 4.199 26 N 0.570 4.430 27 O -0.357 6.357 28 O -0.356 6.356 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.248 0.752 33 H 0.200 0.800 34 H 0.179 0.821 35 H 0.237 0.763 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.107 -1.191 -0.059 19.144 hybrid contribution 1.504 0.656 -0.038 1.641 sum -17.603 -0.535 -0.097 17.612 Atomic orbital electron populations 1.21604 0.77416 1.02583 1.02749 1.44529 1.07955 1.03881 1.78875 1.17672 0.83916 0.88407 0.88987 1.67413 1.38374 0.96706 1.20652 1.22824 0.91839 0.94842 0.87794 1.22199 0.95042 0.98160 1.06544 1.20280 0.95568 0.91050 0.92751 1.18061 0.85543 0.85584 0.79040 1.90923 1.66854 1.32430 1.47902 1.45944 1.09070 1.06854 1.71924 1.19919 0.74717 1.03072 0.88376 0.89218 1.20856 0.92838 1.01143 1.44464 0.90185 1.25093 0.96334 0.98412 0.94534 1.70410 1.02560 1.34194 1.39662 0.86103 0.78946 0.81673 0.78803 1.19342 1.20429 1.20454 1.23052 0.78205 0.71444 0.91215 1.92996 1.88086 1.58436 1.79487 1.93418 1.26340 1.95573 1.96116 1.93096 1.90158 1.48001 1.88485 1.21244 0.90984 0.85521 1.22113 1.42905 0.98662 1.00935 1.00500 1.94541 1.55520 1.64755 1.20867 1.94554 1.56026 1.64276 1.20699 0.91698 0.90338 0.91693 0.75207 0.80038 0.82150 0.76270 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 10.72 59.85 0.64 1.33 16 2 N -0.72 -7.56 5.85 -67.23 -0.39 -7.95 16 3 C 0.45 5.75 7.48 -155.06 -1.16 4.60 16 4 N -0.51 -5.59 9.53 -12.48 -0.12 -5.71 16 5 C 0.19 1.63 11.16 -17.62 -0.20 1.43 16 6 C -0.20 -2.11 9.61 -39.02 -0.37 -2.49 16 7 C 0.02 0.24 5.90 -104.69 -0.62 -0.37 16 8 C 0.53 10.70 7.33 -12.19 -0.09 10.61 16 9 O -0.51 -12.22 13.30 -7.91 -0.11 -12.33 16 10 N -0.69 -13.44 4.94 -55.78 -0.28 -13.71 16 11 C 0.24 5.87 2.21 -69.08 -0.15 5.72 16 12 H 0.09 2.44 7.58 -51.93 -0.39 2.05 16 13 C -0.56 -13.55 8.46 -34.44 -0.29 -13.84 16 14 H 0.08 1.80 7.74 -52.48 -0.41 1.40 16 15 C 0.07 1.66 5.20 -17.82 -0.09 1.56 16 16 N -0.84 -22.36 9.50 55.43 0.53 -21.84 16 17 Si 0.92 19.38 29.54 -169.99 -5.02 14.36 16 18 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 C 0.42 10.51 2.81 37.16 0.10 10.62 16 22 F -0.21 -4.97 16.94 2.25 0.04 -4.93 16 23 F -0.13 -3.64 12.91 2.25 0.03 -3.61 16 24 F -0.22 -5.52 15.67 2.25 0.04 -5.48 16 25 C -0.11 -1.73 6.22 -79.14 -0.49 -2.22 16 26 N 0.04 0.72 1.72 34.35 0.06 0.78 16 27 O -0.13 -2.57 19.01 -32.29 -0.61 -3.18 16 28 O -0.13 -2.58 19.03 -32.11 -0.61 -3.19 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.41 4.30 8.06 -40.82 -0.33 3.97 16 33 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.16 1.31 6.53 -52.49 -0.34 0.97 16 35 H 0.40 6.35 6.68 -40.82 -0.27 6.07 16 36 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 333.76 15.07 5.03 5.03 Total: -1.00 -32.90 333.76 -6.71 -39.61 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -2.57 Total: 5.22 kcal Atomic # 6 Polarization: 19.66 SS G_CDS: -2.72 Total: 16.94 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.20 Total: -48.43 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -1.33 Total: -18.70 kcal Atomic # 9 Polarization: -14.13 SS G_CDS: 0.10 Total: -14.02 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.90 -6.71 -39.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645009909.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.924 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds