Wall clock time and date at job start Wed Apr 1 2020 05:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39025 * 120.00103 * 2 1 4 4 N 1.32351 * 119.64502 * 0.24040 * 3 2 1 5 5 C 1.31890 * 121.94779 * 180.24464 * 4 3 2 6 6 C 1.37991 * 121.00055 * 359.77927 * 5 4 3 7 7 C 1.39980 * 119.17193 * 359.97438 * 6 5 4 8 8 C 1.48153 * 120.88162 * 180.02562 * 7 6 5 9 9 O 1.21515 * 120.00188 * 179.97438 * 8 7 6 10 10 N 1.34780 * 120.00239 * 359.97427 * 8 7 6 11 11 C 1.46497 * 120.00186 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.47380 * 325.00631 * 11 10 8 13 13 C 1.50700 * 109.47478 * 204.99778 * 11 10 8 14 14 H 1.08007 * 119.99733 * 0.02562 * 13 11 10 15 15 C 1.37876 * 120.00506 * 180.02562 * 13 11 10 16 16 N 1.31516 * 119.99380 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00188 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47037 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47309 * 120.00081 * 17 15 13 20 20 H 1.48497 * 109.46944 * 239.99968 * 17 15 13 21 21 C 1.53005 * 109.46753 * 85.00083 * 11 10 8 22 22 F 1.39906 * 109.46997 * 60.00215 * 21 11 10 23 23 F 1.39898 * 109.47205 * 179.97438 * 21 11 10 24 24 F 1.39895 * 109.47489 * 299.99944 * 21 11 10 25 25 C 1.39077 * 119.64919 * 180.02562 * 3 2 1 26 26 N 1.48029 * 120.52810 * 0.02562 * 25 3 2 27 27 O 1.21803 * 119.99705 * 269.71873 * 26 25 3 28 28 O 1.21799 * 120.00092 * 89.44769 * 26 25 3 29 29 H 1.08994 * 109.47110 * 60.00161 * 1 2 3 30 30 H 1.09002 * 109.46671 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46595 * 299.99753 * 1 2 3 32 32 H 0.97004 * 120.00030 * 179.97438 * 2 1 3 33 33 H 1.08002 * 119.49594 * 179.75346 * 5 4 3 34 34 H 1.07993 * 120.41432 * 180.02562 * 6 5 4 35 35 H 0.97003 * 119.99588 * 0.02562 * 10 8 7 36 36 H 0.97007 * 119.99204 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1602 1.2040 0.0000 4 7 1.4914 2.3461 0.0048 5 6 2.1044 3.5138 0.0003 6 6 3.4820 3.5933 -0.0053 7 6 4.2336 2.4124 -0.0055 8 6 5.7145 2.4536 -0.0107 9 8 6.3512 1.4186 -0.0104 10 7 6.3558 3.6391 -0.0159 11 6 7.8201 3.6798 -0.0206 12 1 8.2086 2.8500 0.5698 13 6 8.2884 4.9826 0.5748 14 1 7.5672 5.7076 0.9224 15 6 9.6374 5.2491 0.6759 16 7 10.5155 4.3664 0.2522 17 14 10.2178 6.8637 1.4146 18 1 9.0409 7.6780 1.8109 19 1 11.0551 6.5886 2.6097 20 1 11.0186 7.6081 0.4098 21 6 8.3289 3.5644 -1.4590 22 9 7.8303 4.6295 -2.2168 23 9 9.7273 3.6039 -1.4636 24 9 7.8943 2.3551 -2.0118 25 6 3.5509 1.1954 -0.0005 26 7 4.2950 -0.0842 -0.0017 27 8 4.6060 -0.6088 1.0527 28 8 4.5919 -0.6151 -1.0569 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.9500 -0.8401 0.0004 33 1 1.5192 4.4216 0.0005 34 1 3.9741 4.5546 -0.0085 35 1 5.8475 4.4653 -0.0159 36 1 11.4646 4.5541 0.3230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645009909.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:34 Heat of formation + Delta-G solvation = -138.956696 kcal Electronic energy + Delta-G solvation = -31920.810625 eV Core-core repulsion = 26801.156295 eV Total energy + Delta-G solvation = -5119.654329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.50928 -48.14638 -47.80945 -43.42264 -41.78158 -40.64901 -37.60237 -37.21558 -36.83086 -34.78908 -34.24445 -32.25000 -30.44108 -28.03624 -27.69923 -26.68099 -25.33419 -24.08087 -23.38471 -21.95302 -20.78252 -19.90393 -19.87075 -19.49905 -19.01121 -18.78531 -18.73285 -18.06317 -17.67423 -17.26737 -16.91378 -16.48744 -16.31101 -15.86031 -15.71638 -15.64340 -15.12117 -15.05116 -14.64504 -14.54283 -14.38061 -14.31165 -14.24574 -14.08204 -13.93787 -13.17612 -13.12398 -12.85474 -12.83832 -12.69149 -12.48021 -12.28684 -12.26257 -11.77575 -11.74261 -11.63275 -11.59010 -11.07326 -10.75711 -10.36825 -9.35359 -8.25634 -6.58407 -1.01997 -0.66812 -0.33780 0.26895 1.41737 1.44956 1.48359 1.51168 1.61570 1.79837 2.28004 2.35004 2.43511 2.89413 2.96520 3.10984 3.24160 3.46871 3.66296 3.74894 3.79304 4.03660 4.18527 4.30695 4.55982 4.59622 4.74264 4.85320 4.94125 5.08126 5.11548 5.41120 5.58287 5.59540 5.69238 6.26921 6.35836 6.46335 6.49468 6.85949 7.15049 8.67462 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.003541 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.235400 B = 7906.087800 C = 8526.103563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.720 5.720 3 C 0.449 3.551 4 N -0.504 5.504 5 C 0.214 3.786 6 C -0.177 4.177 7 C -0.011 4.011 8 C 0.531 3.469 9 O -0.559 6.559 10 N -0.677 5.677 11 C 0.252 3.748 12 H 0.048 0.952 13 C -0.561 4.561 14 H 0.103 0.897 15 C 0.014 3.986 16 N -0.875 5.875 17 Si 0.988 3.012 18 H -0.248 1.248 19 H -0.281 1.281 20 H -0.282 1.282 21 C 0.413 3.587 22 F -0.198 7.198 23 F -0.148 7.148 24 F -0.222 7.222 25 C -0.144 4.144 26 N 0.046 4.954 27 O -0.156 6.156 28 O -0.165 6.165 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.409 0.591 33 H 0.243 0.757 34 H 0.192 0.808 35 H 0.421 0.579 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.660 2.220 0.504 21.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.349 5.349 3 C 0.210 3.790 4 N -0.223 5.223 5 C 0.053 3.947 6 C -0.200 4.200 7 C -0.023 4.023 8 C 0.317 3.683 9 O -0.438 6.438 10 N -0.328 5.328 11 C 0.145 3.855 12 H 0.065 0.935 13 C -0.597 4.597 14 H 0.121 0.879 15 C -0.192 4.192 16 N -0.509 5.509 17 Si 0.811 3.189 18 H -0.171 1.171 19 H -0.206 1.206 20 H -0.208 1.208 21 C 0.357 3.643 22 F -0.180 7.180 23 F -0.129 7.129 24 F -0.204 7.204 25 C -0.234 4.234 26 N 0.572 4.428 27 O -0.379 6.379 28 O -0.384 6.384 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.089 0.911 32 H 0.244 0.756 33 H 0.259 0.741 34 H 0.210 0.790 35 H 0.261 0.739 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -22.511 2.020 0.446 22.606 hybrid contribution 2.384 -0.311 -0.216 2.414 sum -20.126 1.709 0.230 20.200 Atomic orbital electron populations 1.21860 0.75094 1.04511 1.03146 1.44833 1.09383 1.03208 1.77473 1.17857 0.82764 0.89819 0.88535 1.67652 1.37727 0.96696 1.20222 1.23839 0.91268 0.95855 0.83696 1.22653 0.95850 0.97342 1.04178 1.20024 0.92791 0.92941 0.96549 1.18722 0.87610 0.84621 0.77381 1.90891 1.68657 1.34163 1.50091 1.45668 1.07348 1.07950 1.71858 1.19484 0.77235 1.01774 0.87013 0.93474 1.21253 0.93396 1.01200 1.43848 0.87926 1.26066 0.96600 1.01759 0.94760 1.70552 1.02791 1.36308 1.41229 0.85040 0.78834 0.77516 0.77530 1.17122 1.20640 1.20782 1.23285 0.77646 0.71415 0.91982 1.92996 1.87856 1.57860 1.79318 1.93389 1.27655 1.95646 1.96242 1.93084 1.90137 1.48535 1.88641 1.21408 0.91994 0.83633 1.26382 1.43300 0.98002 1.01739 0.99727 1.94498 1.56293 1.65977 1.21094 1.94517 1.57247 1.65669 1.20998 0.91206 0.87884 0.91122 0.75608 0.74111 0.79047 0.73931 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.08 10.72 127.77 1.37 2.45 16 2 N -0.72 -14.17 5.85 -366.61 -2.15 -16.32 16 3 C 0.45 10.74 7.48 133.06 0.99 11.74 16 4 N -0.50 -8.96 9.53 -193.40 -1.84 -10.81 16 5 C 0.21 2.55 11.16 84.63 0.94 3.49 16 6 C -0.18 -3.11 9.61 22.63 0.22 -2.89 16 7 C -0.01 -0.34 5.90 -19.91 -0.12 -0.46 16 8 C 0.53 21.68 7.33 86.88 0.64 22.32 16 9 O -0.56 -28.63 13.30 8.92 0.12 -28.51 16 10 N -0.68 -26.22 4.94 -448.68 -2.22 -28.43 16 11 C 0.25 12.35 2.21 44.25 0.10 12.45 16 12 H 0.05 2.73 7.58 -2.39 -0.02 2.71 16 13 C -0.56 -26.89 8.46 25.60 0.22 -26.68 16 14 H 0.10 4.35 7.74 -2.91 -0.02 4.32 16 15 C 0.01 0.69 5.20 84.65 0.44 1.13 16 16 N -0.88 -47.89 9.50 21.45 0.20 -47.68 16 17 Si 0.99 38.85 29.54 68.60 2.03 40.88 16 18 H -0.25 -8.84 7.11 99.48 0.71 -8.14 16 19 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 20 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 21 C 0.41 21.30 2.81 71.98 0.20 21.50 16 22 F -0.20 -9.40 16.94 44.97 0.76 -8.64 16 23 F -0.15 -8.36 12.91 44.97 0.58 -7.78 16 24 F -0.22 -11.82 15.67 44.97 0.70 -11.11 16 25 C -0.14 -4.58 6.22 36.89 0.23 -4.35 16 26 N 0.05 1.78 1.72 -45.23 -0.08 1.70 16 27 O -0.16 -6.41 19.01 21.58 0.41 -6.00 16 28 O -0.16 -6.87 19.03 21.42 0.41 -6.47 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.41 8.54 8.06 -92.71 -0.75 7.79 16 33 H 0.24 0.06 8.06 -2.91 -0.02 0.04 16 34 H 0.19 2.09 6.53 -2.91 -0.02 2.07 16 35 H 0.42 12.34 6.68 -92.71 -0.62 11.73 16 36 H 0.27 13.98 8.31 -92.70 -0.77 13.21 16 Total: -1.00 -77.47 333.76 4.00 -73.47 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -0.16 Total: 15.01 kcal Atomic # 6 Polarization: 35.46 SS G_CDS: 5.23 Total: 40.69 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -6.08 Total: -101.54 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: 0.94 Total: -40.99 kcal Atomic # 9 Polarization: -29.58 SS G_CDS: 2.05 Total: -27.53 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -77.47 4.00 -73.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645009909.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.489 kcal (2) G-P(sol) polarization free energy of solvation -77.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds