Wall clock time and date at job start Wed Apr 1 2020 05:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 119.99562 * 2 1 4 4 H 1.48497 * 109.47341 * 85.19305 * 3 2 1 5 5 H 1.48498 * 109.47109 * 205.19346 * 3 2 1 6 6 H 1.48496 * 109.47346 * 325.19509 * 3 2 1 7 7 C 1.39941 * 120.00323 * 179.72019 * 2 1 3 8 8 H 1.08003 * 120.00004 * 196.85065 * 7 2 1 9 9 C 1.41400 * 119.99928 * 16.85381 * 7 2 1 10 10 C 1.40732 * 120.24189 * 25.74582 * 9 7 2 11 11 C 1.37597 * 119.74358 * 179.71971 * 10 9 7 12 12 C 1.38655 * 120.24631 * 0.57589 * 11 10 9 13 13 C 1.38609 * 120.50433 * 359.67363 * 12 11 10 14 14 C 1.37648 * 120.24564 * 0.04601 * 13 12 11 15 15 C 1.50701 * 120.12506 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47092 * 264.97499 * 15 14 13 17 17 N 1.31129 * 126.55381 * 89.71262 * 16 15 14 18 18 C 1.34490 * 105.62005 * 179.97438 * 17 16 15 19 19 C 1.50698 * 126.29309 * 180.12702 * 18 17 16 20 20 H 1.09007 * 109.63690 * 0.66986 * 19 18 17 21 21 C 1.53877 * 109.64431 * 120.96030 * 19 18 17 22 22 C 1.55051 * 106.62174 * 167.03742 * 21 19 18 23 23 S 1.83289 * 102.56435 * 317.56668 * 22 21 19 24 24 O 1.42102 * 109.35434 * 269.81147 * 23 22 21 25 25 O 1.42108 * 109.35266 * 136.61032 * 23 22 21 26 26 C 1.54161 * 109.65007 * 240.23945 * 19 18 17 27 27 N 1.29950 * 107.41917 * 0.34986 * 18 17 16 28 28 O 1.21295 * 110.25489 * 359.77953 * 27 18 17 29 29 H 0.96999 * 120.00297 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.13018 * 359.97438 * 10 9 7 31 31 H 1.07996 * 119.87835 * 180.29501 * 11 10 9 32 32 H 1.08000 * 119.75222 * 179.69731 * 12 11 10 33 33 H 1.08000 * 119.88082 * 180.02562 * 13 12 11 34 34 H 1.08997 * 109.47061 * 24.97708 * 15 14 13 35 35 H 1.09000 * 109.46890 * 144.97836 * 15 14 13 36 36 H 1.08996 * 110.02930 * 286.32687 * 21 19 18 37 37 H 1.09000 * 110.02794 * 47.74926 * 21 19 18 38 38 H 1.09003 * 110.79243 * 199.30028 * 22 21 19 39 39 H 1.09004 * 110.95282 * 75.91105 * 22 21 19 40 40 H 1.09003 * 110.31685 * 331.14332 * 26 19 18 41 41 H 1.09002 * 110.31677 * 93.33230 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3880 2.1052 1.3951 5 1 3.5868 1.4131 -0.5960 6 1 1.4940 2.6212 -0.7991 7 6 2.0080 -1.2119 0.0059 8 1 3.0533 -1.2306 0.2771 9 6 1.3466 -2.4119 -0.3433 10 6 0.2196 -2.3808 -1.1856 11 6 -0.4127 -3.5553 -1.5235 12 6 0.0494 -4.7649 -1.0278 13 6 1.1553 -4.8070 -0.1932 14 6 1.8069 -3.6451 0.1534 15 6 3.0094 -3.6940 1.0605 16 6 2.5759 -3.4490 2.4829 17 7 2.2027 -4.3564 3.3529 18 6 1.9097 -3.6804 4.4780 19 6 1.4330 -4.2757 5.7777 20 1 1.3675 -5.3596 5.6820 21 6 2.4190 -3.9172 6.9034 22 6 1.7124 -4.2642 8.2392 23 16 0.0090 -3.6472 7.9611 24 8 -0.0781 -2.2953 8.3901 25 8 -0.9234 -4.6059 8.4416 26 6 0.0470 -3.7020 6.1332 27 7 2.1087 -2.4190 4.2370 28 8 2.4916 -2.2647 3.0965 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1451 -1.4392 -1.5687 31 1 -1.2748 -3.5344 -2.1735 32 1 -0.4559 -5.6815 -1.2942 33 1 1.5069 -5.7548 0.1868 34 1 3.4797 -4.6745 0.9877 35 1 3.7222 -2.9259 0.7605 36 1 3.3320 -4.5037 6.8008 37 1 2.6527 -2.8531 6.8701 38 1 2.1819 -3.7414 9.0725 39 1 1.7108 -5.3405 8.4112 40 1 -0.0641 -2.6987 5.7220 41 1 -0.7407 -4.3552 5.7576 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647140038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:53 Heat of formation + Delta-G solvation = 12.052234 kcal Electronic energy + Delta-G solvation = -28048.449159 eV Core-core repulsion = 24023.493022 eV Total energy + Delta-G solvation = -4024.956136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.09446 -37.93951 -37.62632 -37.24373 -36.22811 -34.97805 -33.77647 -33.21140 -30.87988 -30.01939 -29.61640 -26.87249 -26.20129 -25.16732 -23.47940 -22.79102 -21.14192 -20.60144 -19.62653 -19.09960 -17.61788 -17.49072 -17.25202 -17.00893 -16.36936 -15.88050 -15.55639 -14.79018 -14.77999 -14.57883 -14.42688 -14.07922 -13.84062 -13.71119 -12.82379 -12.72024 -12.68248 -12.62597 -12.38431 -12.34599 -12.23574 -12.11740 -11.67511 -11.51971 -11.33470 -11.26703 -11.12395 -11.05930 -10.97938 -10.86570 -10.62069 -10.59626 -10.50913 -9.83507 -9.62657 -9.29947 -9.20707 -7.57572 -7.50886 -6.88579 -4.51612 -0.24434 1.61470 2.19651 2.50700 2.68996 2.83298 3.03214 3.05634 3.16203 3.30219 3.42914 3.59576 3.85469 3.87555 3.95749 4.25354 4.30513 4.49504 4.52931 4.60451 4.68058 5.11593 5.17587 5.31636 5.40622 5.55991 5.58381 5.72859 5.80424 5.89267 6.07543 6.15986 6.25592 6.37327 6.40680 6.60790 6.96293 7.10808 7.22447 7.45229 7.73078 7.85492 7.95824 8.12229 8.46879 8.61628 8.72750 8.80301 10.05546 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012023 B = 0.003285 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.265107 B = 8521.807589 C = 9412.649973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.081 3.919 3 Si 0.903 3.097 4 H -0.268 1.268 5 H -0.258 1.258 6 H -0.275 1.275 7 C -0.458 4.458 8 H 0.083 0.917 9 C 0.126 3.874 10 C -0.161 4.161 11 C -0.100 4.100 12 C -0.245 4.245 13 C -0.067 4.067 14 C -0.222 4.222 15 C 0.037 3.963 16 C 0.229 3.771 17 N -0.498 5.498 18 C 0.160 3.840 19 C 0.019 3.981 20 H 0.121 0.879 21 C -0.115 4.115 22 C -0.585 4.585 23 S 2.394 3.606 24 O -0.931 6.931 25 O -0.937 6.937 26 C -0.591 4.591 27 N -0.390 5.390 28 O 0.097 5.903 29 H 0.282 0.718 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.413 -6.320 10.126 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.138 4.138 3 Si 0.727 3.273 4 H -0.193 1.193 5 H -0.182 1.182 6 H -0.200 1.200 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.123 3.877 10 C -0.181 4.181 11 C -0.118 4.118 12 C -0.264 4.264 13 C -0.085 4.085 14 C -0.225 4.225 15 C -0.002 4.002 16 C 0.010 3.990 17 N -0.232 5.232 18 C -0.113 4.113 19 C -0.003 4.003 20 H 0.139 0.861 21 C -0.154 4.154 22 C -0.715 4.715 23 S 2.576 3.424 24 O -0.928 6.928 25 O -0.934 6.934 26 C -0.721 4.721 27 N -0.098 5.098 28 O 0.037 5.963 29 H 0.093 0.907 30 H 0.137 0.863 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.163 0.837 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.258 -5.656 11.532 13.532 hybrid contribution 0.660 0.583 -0.816 1.201 sum 4.918 -5.073 10.716 12.836 Atomic orbital electron populations 1.69805 1.07706 1.29519 1.34115 1.25885 0.94667 1.01414 0.91879 0.86358 0.80824 0.80739 0.79349 1.19281 1.18171 1.20026 1.19590 0.97759 0.90869 1.40407 0.89936 1.17418 0.90846 0.91243 0.88178 1.21329 0.99200 0.96784 1.00738 1.20751 0.98407 0.93425 0.99257 1.20354 1.01646 0.96354 1.08036 1.20388 0.95237 0.95879 0.97015 1.19074 1.02236 0.94447 1.06735 1.18909 0.97783 1.03110 0.80417 1.29241 0.92682 0.78823 0.98262 1.71838 1.19956 1.31525 0.99866 1.25009 1.02699 0.87041 0.96597 1.19718 0.90676 1.01721 0.88136 0.86095 1.22298 0.99665 1.04838 0.88611 1.30615 1.22513 1.13018 1.05319 1.08982 0.78633 0.75888 0.78875 1.93643 1.85985 1.33750 1.79398 1.93620 1.59144 1.62619 1.78001 1.30724 1.03993 1.11950 1.25395 1.74505 1.18137 1.19369 0.97773 1.85382 1.59902 1.34063 1.16908 0.90673 0.86335 0.89380 0.89397 0.89043 0.88647 0.88067 0.87739 0.88582 0.84023 0.84031 0.83721 0.83468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.41 10.98 55.55 0.61 -18.80 16 2 C 0.08 1.90 5.15 -17.34 -0.09 1.81 16 3 Si 0.90 17.77 29.59 -169.99 -5.03 12.74 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 6 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -10.83 8.46 -37.74 -0.32 -11.15 16 8 H 0.08 1.82 6.37 -52.48 -0.33 1.49 16 9 C 0.13 3.02 5.56 -106.83 -0.59 2.43 16 10 C -0.16 -3.93 8.69 -38.87 -0.34 -4.27 16 11 C -0.10 -2.23 10.02 -39.66 -0.40 -2.63 16 12 C -0.24 -5.19 10.05 -39.29 -0.39 -5.59 16 13 C -0.07 -1.39 9.66 -39.66 -0.38 -1.77 16 14 C -0.22 -4.75 5.17 -103.91 -0.54 -5.29 16 15 C 0.04 0.65 5.50 -29.03 -0.16 0.49 16 16 C 0.23 4.29 7.75 -13.06 -0.10 4.19 16 17 N -0.50 -8.92 11.55 -9.87 -0.11 -9.04 16 18 C 0.16 2.61 6.65 -156.37 -1.04 1.57 16 19 C 0.02 0.21 3.08 -90.71 -0.28 -0.07 16 20 H 0.12 1.10 8.14 -51.92 -0.42 0.68 16 21 C -0.11 -0.98 5.79 -25.19 -0.15 -1.13 16 22 C -0.59 -3.74 7.31 38.24 0.28 -3.46 16 23 S 2.39 23.59 6.11 -107.50 -0.66 22.93 16 24 O -0.93 -12.78 18.15 -57.71 -1.05 -13.82 16 25 O -0.94 -11.83 18.15 -57.71 -1.05 -12.87 16 26 C -0.59 -6.41 6.74 37.76 0.25 -6.15 16 27 N -0.39 -7.22 11.92 30.90 0.37 -6.85 16 28 O 0.10 1.93 11.31 18.10 0.20 2.14 16 29 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 30 H 0.12 3.00 6.22 -52.48 -0.33 2.67 16 31 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 33 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.10 1.42 8.05 -51.93 -0.42 1.00 16 35 H 0.10 1.67 6.49 -51.93 -0.34 1.33 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 0.90 8.06 -51.93 -0.42 0.49 16 38 H 0.14 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.14 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.14 1.83 7.73 -51.93 -0.40 1.43 16 41 H 0.15 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -32.59 360.74 -10.27 -42.86 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -4.75 Total: 6.30 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: -4.25 Total: -31.02 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.86 Total: -34.68 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -1.89 Total: -24.56 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Atomic # 16 Polarization: 23.59 SS G_CDS: -0.66 Total: 22.93 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.59 -10.27 -42.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647140038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.912 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds