Wall clock time and date at job start Wed Apr 1 2020 05:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21585 * 120.00300 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99711 * 180.02562 * 12 11 9 15 15 N 1.40099 * 120.00494 * 0.02562 * 14 12 11 16 16 C 1.39670 * 120.00334 * 180.02562 * 15 14 12 17 17 C 1.38913 * 120.07603 * 359.71588 * 16 15 14 18 18 C 1.38100 * 119.92445 * 179.77133 * 17 16 15 19 19 C 1.38289 * 120.07733 * 0.48863 * 18 17 16 20 20 N 1.48019 * 119.92732 * 179.76484 * 19 18 17 21 21 O 1.21798 * 120.00005 * 180.02562 * 20 19 18 22 22 O 1.21808 * 119.99795 * 0.02583 * 20 19 18 23 23 C 1.38280 * 120.14581 * 359.79138 * 19 18 17 24 24 C 1.38108 * 120.07723 * 359.95198 * 23 19 18 25 25 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 26 26 F 1.39903 * 109.47440 * 60.00123 * 25 9 7 27 27 F 1.39899 * 109.47255 * 180.02562 * 25 9 7 28 28 F 1.39900 * 109.47102 * 299.99874 * 25 9 7 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 31 31 H 0.97005 * 119.99633 * 180.02562 * 14 12 11 32 32 H 0.97001 * 119.99748 * 359.97438 * 15 14 12 33 33 H 1.08000 * 120.03430 * 0.02562 * 17 16 15 34 34 H 1.08000 * 119.96108 * 180.23607 * 18 17 16 35 35 H 1.08005 * 119.96412 * 179.97438 * 23 19 18 36 36 H 1.08001 * 120.03255 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7166 -4.9703 -0.9392 14 7 2.7125 -5.8369 -0.4933 15 7 4.0032 -5.6551 0.0204 16 6 4.9108 -6.7167 0.0204 17 6 4.5335 -7.9552 -0.4831 18 6 5.4349 -9.0014 -0.4859 19 6 6.7087 -8.8201 0.0211 20 7 7.6705 -9.9452 0.0212 21 8 8.7926 -9.7871 0.4678 22 8 7.3399 -11.0291 -0.4254 23 6 7.0857 -7.5902 0.5284 24 6 6.1909 -6.5381 0.5294 25 6 0.3719 -2.5805 1.2490 26 9 -0.5373 -1.5171 1.2496 27 9 -0.3272 -3.7922 1.2493 28 9 1.1766 -2.5067 2.3910 29 1 -0.4850 0.8401 0.0004 30 1 3.0969 -3.4866 0.3545 31 1 2.4491 -6.7002 -0.8486 32 1 4.2667 -4.7917 0.3754 33 1 3.5377 -8.0985 -0.8757 34 1 5.1435 -9.9634 -0.8808 35 1 8.0811 -7.4519 0.9240 36 1 6.4862 -5.5777 0.9254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680564339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:10 Heat of formation + Delta-G solvation = -93.375097 kcal Electronic energy + Delta-G solvation = -30301.444997 eV Core-core repulsion = 25183.767234 eV Total energy + Delta-G solvation = -5117.677763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.53437 -46.18968 -45.79263 -42.20981 -40.53108 -39.47064 -36.62933 -36.60533 -35.05872 -32.97316 -32.49133 -31.71132 -29.51898 -28.41927 -25.88224 -24.78698 -23.87361 -22.39906 -22.22670 -20.53749 -19.53876 -19.43582 -18.80211 -18.58645 -17.56675 -17.26244 -16.99792 -16.83768 -16.55623 -15.79953 -15.47067 -15.31851 -14.99888 -14.91385 -14.55885 -14.17649 -14.04414 -13.70158 -13.50138 -13.11056 -12.74583 -12.58457 -12.46514 -12.28737 -12.17392 -11.99903 -11.88607 -11.62267 -11.36275 -11.27606 -11.22132 -11.06906 -11.01442 -10.62211 -10.17753 -9.98038 -9.91616 -9.82142 -8.94029 -8.65713 -7.89035 -6.41760 -4.67972 -0.22256 0.63320 1.23565 1.35726 1.55514 2.96834 3.05327 3.07909 3.14115 3.16554 3.25804 4.00432 4.04172 4.13862 4.32162 4.39025 4.49953 4.67286 4.75409 4.91678 5.24596 5.32133 5.47669 5.51796 5.61136 5.66165 5.79062 5.98015 6.02334 6.33734 6.50549 6.71868 6.93487 7.05534 7.35642 7.43719 7.58623 8.13932 8.30004 8.59061 9.00924 10.49681 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.018908 B = 0.002406 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.536784 B =11635.113015 C =12460.496309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.067 3.933 3 Si 0.917 3.083 4 H -0.282 1.282 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.558 4.558 8 H 0.077 0.923 9 C 0.261 3.739 10 H 0.089 0.911 11 N -0.720 5.720 12 C 0.708 3.292 13 O -0.556 6.556 14 N -0.543 5.543 15 N -0.518 5.518 16 C 0.275 3.725 17 C -0.201 4.201 18 C 0.004 3.996 19 C -0.114 4.114 20 N 0.043 4.957 21 O -0.179 6.179 22 O -0.180 6.180 23 C 0.003 3.997 24 C -0.192 4.192 25 C 0.415 3.585 26 F -0.135 7.135 27 F -0.217 7.217 28 F -0.209 7.209 29 H 0.271 0.729 30 H 0.390 0.610 31 H 0.431 0.569 32 H 0.432 0.568 33 H 0.142 0.858 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.981 -9.991 0.553 14.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.143 4.143 3 Si 0.744 3.256 4 H -0.207 1.207 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.595 4.595 8 H 0.095 0.905 9 C 0.155 3.845 10 H 0.107 0.893 11 N -0.374 5.374 12 C 0.407 3.593 13 O -0.427 6.427 14 N -0.301 5.301 15 N -0.242 5.242 16 C 0.164 3.836 17 C -0.225 4.225 18 C -0.016 4.016 19 C -0.201 4.201 20 N 0.557 4.443 21 O -0.391 6.391 22 O -0.392 6.392 23 C -0.017 4.017 24 C -0.217 4.217 25 C 0.359 3.641 26 F -0.116 7.116 27 F -0.199 7.199 28 F -0.191 7.191 29 H 0.082 0.918 30 H 0.224 0.776 31 H 0.276 0.724 32 H 0.277 0.723 33 H 0.160 0.840 34 H 0.171 0.829 35 H 0.172 0.828 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.174 -9.205 0.206 12.312 hybrid contribution 0.889 0.577 0.523 1.182 sum 9.063 -8.628 0.729 12.534 Atomic orbital electron populations 1.70373 1.05895 1.27834 1.42777 1.25076 0.95195 1.00194 0.93822 0.86230 0.79354 0.81102 0.78959 1.20721 1.19747 1.19715 1.20777 0.93698 0.87915 1.57121 0.90482 1.19740 0.88099 0.84624 0.92001 0.89308 1.45357 1.17402 1.09777 1.64865 1.15888 0.83341 0.80323 0.79737 1.91061 1.17557 1.81116 1.52995 1.44890 1.01701 1.15380 1.68090 1.43693 1.03020 1.12819 1.64650 1.18079 0.88269 0.87074 0.90221 1.20429 1.01431 0.91335 1.09306 1.20698 0.89416 1.00056 0.91450 1.20773 0.92038 0.88566 1.18702 1.43513 1.01333 1.01978 0.97498 1.94516 1.06421 1.89753 1.48411 1.94521 1.83142 1.13042 1.48471 1.20686 1.00403 0.88969 0.91664 1.20448 0.91593 1.00866 1.08780 1.23149 0.80950 0.72929 0.87070 1.93417 1.68293 1.53687 1.96174 1.93078 1.81503 1.48332 1.96963 1.92992 1.74375 1.96190 1.55559 0.91788 0.77607 0.72354 0.72345 0.84050 0.82949 0.82793 0.83181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.52 9.50 55.43 0.53 -20.99 16 2 C 0.07 1.62 5.20 -17.82 -0.09 1.53 16 3 Si 0.92 18.71 29.54 -169.99 -5.02 13.69 16 4 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.56 -12.95 8.46 -34.44 -0.29 -13.25 16 8 H 0.08 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.26 5.87 2.21 -69.09 -0.15 5.71 16 10 H 0.09 2.26 7.58 -51.93 -0.39 1.86 16 11 N -0.72 -12.59 4.95 -59.82 -0.30 -12.88 16 12 C 0.71 11.95 8.21 -86.92 -0.71 11.24 16 13 O -0.56 -11.68 15.75 5.29 0.08 -11.60 16 14 N -0.54 -6.30 6.22 27.63 0.17 -6.13 16 15 N -0.52 -4.56 6.45 32.41 0.21 -4.36 16 16 C 0.28 2.13 6.72 -83.79 -0.56 1.56 16 17 C -0.20 -1.51 9.48 -39.38 -0.37 -1.88 16 18 C 0.00 0.03 9.55 -39.61 -0.38 -0.35 16 19 C -0.11 -1.09 6.85 -79.91 -0.55 -1.64 16 20 N 0.04 0.52 4.45 33.98 0.15 0.67 16 21 O -0.18 -2.30 18.44 -29.46 -0.54 -2.85 16 22 O -0.18 -2.34 18.44 -29.46 -0.54 -2.89 16 23 C 0.00 0.02 9.55 -39.61 -0.38 -0.35 16 24 C -0.19 -1.27 9.90 -39.38 -0.39 -1.66 16 25 C 0.42 9.85 2.81 37.16 0.10 9.96 16 26 F -0.13 -3.50 12.91 2.25 0.03 -3.47 16 27 F -0.22 -5.13 15.67 2.25 0.04 -5.09 16 28 F -0.21 -4.75 16.94 2.25 0.04 -4.71 16 29 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 30 H 0.39 5.54 6.46 -40.82 -0.26 5.28 16 31 H 0.43 4.20 6.70 -182.59 -1.22 2.98 16 32 H 0.43 3.36 6.71 -182.60 -1.23 2.13 16 33 H 0.14 0.86 6.20 -52.49 -0.33 0.53 16 34 H 0.15 1.05 7.60 -52.49 -0.40 0.65 16 35 H 0.15 0.97 7.60 -52.48 -0.40 0.57 16 36 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 332.50 15.07 5.01 5.01 Total: -1.00 -30.35 332.50 -8.12 -38.47 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -4.19 Total: 6.26 kcal Atomic # 6 Polarization: 14.65 SS G_CDS: -3.78 Total: 10.88 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.76 Total: -43.69 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -1.00 Total: -17.33 kcal Atomic # 9 Polarization: -13.38 SS G_CDS: 0.10 Total: -13.28 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.02 Total: 13.69 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.35 -8.12 -38.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680564339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.910 kcal (2) G-P(sol) polarization free energy of solvation -30.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds