Wall clock time and date at job start Wed Apr 1 2020 05:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21585 * 120.00300 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99711 * 180.02562 * 12 11 9 15 15 N 1.40099 * 120.00494 * 0.02562 * 14 12 11 16 16 C 1.39670 * 120.00334 * 180.02562 * 15 14 12 17 17 C 1.38913 * 120.07603 * 359.71588 * 16 15 14 18 18 C 1.38100 * 119.92445 * 179.77133 * 17 16 15 19 19 C 1.38289 * 120.07733 * 0.48863 * 18 17 16 20 20 N 1.48019 * 119.92732 * 179.76484 * 19 18 17 21 21 O 1.21798 * 120.00005 * 180.02562 * 20 19 18 22 22 O 1.21808 * 119.99795 * 0.02583 * 20 19 18 23 23 C 1.38280 * 120.14581 * 359.79138 * 19 18 17 24 24 C 1.38108 * 120.07723 * 359.95198 * 23 19 18 25 25 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 26 26 F 1.39903 * 109.47440 * 60.00123 * 25 9 7 27 27 F 1.39899 * 109.47255 * 180.02562 * 25 9 7 28 28 F 1.39900 * 109.47102 * 299.99874 * 25 9 7 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 31 31 H 0.97005 * 119.99633 * 180.02562 * 14 12 11 32 32 H 0.97001 * 119.99748 * 359.97438 * 15 14 12 33 33 H 1.08000 * 120.03430 * 0.02562 * 17 16 15 34 34 H 1.08000 * 119.96108 * 180.23607 * 18 17 16 35 35 H 1.08005 * 119.96412 * 179.97438 * 23 19 18 36 36 H 1.08001 * 120.03255 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7166 -4.9703 -0.9392 14 7 2.7125 -5.8369 -0.4933 15 7 4.0032 -5.6551 0.0204 16 6 4.9108 -6.7167 0.0204 17 6 4.5335 -7.9552 -0.4831 18 6 5.4349 -9.0014 -0.4859 19 6 6.7087 -8.8201 0.0211 20 7 7.6705 -9.9452 0.0212 21 8 8.7926 -9.7871 0.4678 22 8 7.3399 -11.0291 -0.4254 23 6 7.0857 -7.5902 0.5284 24 6 6.1909 -6.5381 0.5294 25 6 0.3719 -2.5805 1.2490 26 9 -0.5373 -1.5171 1.2496 27 9 -0.3272 -3.7922 1.2493 28 9 1.1766 -2.5067 2.3910 29 1 -0.4850 0.8401 0.0004 30 1 3.0969 -3.4866 0.3545 31 1 2.4491 -6.7002 -0.8486 32 1 4.2667 -4.7917 0.3754 33 1 3.5377 -8.0985 -0.8757 34 1 5.1435 -9.9634 -0.8808 35 1 8.0811 -7.4519 0.9240 36 1 6.4862 -5.5777 0.9254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680564339.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:10 Heat of formation + Delta-G solvation = -112.405237 kcal Electronic energy + Delta-G solvation = -30302.270205 eV Core-core repulsion = 25183.767234 eV Total energy + Delta-G solvation = -5118.502972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.42475 -48.05915 -47.73487 -43.07431 -41.56664 -40.44390 -37.59365 -37.52724 -36.67346 -34.52479 -33.52838 -32.35862 -30.51644 -29.92635 -26.71789 -26.61586 -24.69964 -23.69020 -23.16590 -21.97720 -20.66121 -20.28798 -19.71524 -19.51837 -18.95385 -18.79441 -18.65389 -18.44325 -17.85195 -17.14066 -16.84105 -16.46284 -16.35913 -15.79913 -15.52060 -15.14661 -14.98671 -14.85275 -14.74088 -14.56782 -14.46438 -14.37539 -14.29747 -14.04174 -13.90126 -13.22408 -13.02733 -12.78884 -12.63232 -12.61598 -12.40968 -12.26057 -12.19789 -12.19057 -11.67490 -11.64511 -10.90627 -10.69357 -10.41150 -10.23822 -8.71207 -8.22845 -6.54217 -1.05920 0.05198 0.43572 0.54923 0.68142 1.48782 1.49870 1.58389 1.81357 1.89031 2.36363 2.37853 2.52700 2.93661 3.34966 3.45382 3.63766 3.75355 3.82289 3.85754 3.99292 4.14782 4.30774 4.59859 4.69805 4.79240 4.86678 4.95103 5.08182 5.21675 5.23492 5.43502 5.51828 5.62146 5.93645 6.17442 6.50440 6.62503 6.97857 7.16490 7.31597 8.69347 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.018908 B = 0.002406 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.536784 B =11635.113015 C =12460.496309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.017 3.983 3 Si 0.981 3.019 4 H -0.289 1.289 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.562 4.562 8 H 0.097 0.903 9 C 0.270 3.730 10 H 0.053 0.947 11 N -0.713 5.713 12 C 0.708 3.292 13 O -0.602 6.602 14 N -0.525 5.525 15 N -0.514 5.514 16 C 0.273 3.727 17 C -0.199 4.199 18 C 0.002 3.998 19 C -0.127 4.127 20 N 0.044 4.956 21 O -0.196 6.196 22 O -0.208 6.208 23 C 0.003 3.997 24 C -0.176 4.176 25 C 0.411 3.589 26 F -0.151 7.151 27 F -0.219 7.219 28 F -0.203 7.203 29 H 0.269 0.731 30 H 0.407 0.593 31 H 0.442 0.558 32 H 0.439 0.561 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.168 0.832 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.860 -9.373 0.972 15.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.189 4.189 3 Si 0.805 3.195 4 H -0.215 1.215 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.599 4.599 8 H 0.115 0.885 9 C 0.162 3.838 10 H 0.071 0.929 11 N -0.369 5.369 12 C 0.407 3.593 13 O -0.478 6.478 14 N -0.281 5.281 15 N -0.240 5.240 16 C 0.163 3.837 17 C -0.223 4.223 18 C -0.018 4.018 19 C -0.214 4.214 20 N 0.552 4.448 21 O -0.406 6.406 22 O -0.415 6.415 23 C -0.018 4.018 24 C -0.200 4.200 25 C 0.355 3.645 26 F -0.132 7.132 27 F -0.201 7.201 28 F -0.184 7.184 29 H 0.079 0.921 30 H 0.245 0.755 31 H 0.290 0.710 32 H 0.285 0.715 33 H 0.173 0.827 34 H 0.178 0.822 35 H 0.186 0.814 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 10.151 -8.687 0.628 13.375 hybrid contribution 0.324 0.328 0.412 0.618 sum 10.475 -8.359 1.040 13.442 Atomic orbital electron populations 1.70513 1.07495 1.28318 1.44319 1.25958 0.95826 1.03608 0.93462 0.85236 0.77999 0.76874 0.79406 1.21466 1.18903 1.18691 1.21178 0.94701 0.87997 1.56032 0.88472 1.19273 0.88308 0.86257 0.89926 0.92910 1.44980 1.17437 1.09099 1.65361 1.15868 0.83343 0.80730 0.79342 1.91034 1.19915 1.82086 1.54732 1.44394 1.02456 1.14333 1.66917 1.43644 1.01633 1.13614 1.65148 1.18232 0.88445 0.86732 0.90262 1.20604 1.01893 0.91058 1.08763 1.20829 0.88999 1.00730 0.91278 1.21043 0.92027 0.88318 1.20041 1.43874 1.01542 1.02413 0.96949 1.94492 1.07335 1.89905 1.48887 1.94507 1.83287 1.14185 1.49485 1.20922 1.01317 0.88311 0.91243 1.20731 0.90448 1.01661 1.07167 1.23371 0.80934 0.72424 0.87800 1.93385 1.68968 1.54533 1.96303 1.93069 1.81652 1.48339 1.97013 1.92991 1.74047 1.96149 1.55255 0.92123 0.75535 0.71016 0.71527 0.82688 0.82197 0.81423 0.80151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.37 9.50 21.45 0.20 -45.16 16 2 C 0.02 0.83 5.20 84.66 0.44 1.27 16 3 Si 0.98 37.29 29.54 68.60 2.03 39.32 16 4 H -0.29 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 6 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.56 -25.38 8.46 25.60 0.22 -25.17 16 8 H 0.10 3.88 7.74 -2.91 -0.02 3.86 16 9 C 0.27 12.08 2.21 44.24 0.10 12.18 16 10 H 0.05 2.77 7.58 -2.39 -0.02 2.75 16 11 N -0.71 -23.91 4.95 -461.42 -2.28 -26.19 16 12 C 0.71 23.09 8.21 179.05 1.47 24.55 16 13 O -0.60 -25.40 15.75 -3.98 -0.06 -25.46 16 14 N -0.52 -10.98 6.22 -184.75 -1.15 -12.13 16 15 N -0.51 -7.34 6.45 -51.37 -0.33 -7.67 16 16 C 0.27 3.29 6.72 38.21 0.26 3.54 16 17 C -0.20 -2.45 9.48 22.40 0.21 -2.23 16 18 C 0.00 0.03 9.55 22.25 0.21 0.24 16 19 C -0.13 -2.22 6.85 36.40 0.25 -1.97 16 20 N 0.04 1.05 4.45 -46.41 -0.21 0.85 16 21 O -0.20 -4.96 18.44 18.89 0.35 -4.61 16 22 O -0.21 -5.43 18.44 18.88 0.35 -5.08 16 23 C 0.00 0.03 9.55 22.25 0.21 0.24 16 24 C -0.18 -1.64 9.90 22.40 0.22 -1.42 16 25 C 0.41 19.50 2.81 71.98 0.20 19.70 16 26 F -0.15 -7.96 12.91 44.97 0.58 -7.38 16 27 F -0.22 -10.40 15.67 44.97 0.70 -9.70 16 28 F -0.20 -8.98 16.94 44.97 0.76 -8.21 16 29 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 30 H 0.41 10.50 6.46 -92.70 -0.60 9.90 16 31 H 0.44 7.60 6.70 -213.32 -1.43 6.17 16 32 H 0.44 5.16 6.71 -213.32 -1.43 3.73 16 33 H 0.16 1.45 6.20 -2.91 -0.02 1.43 16 34 H 0.16 2.01 7.60 -2.91 -0.02 1.99 16 35 H 0.17 1.65 7.60 -2.91 -0.02 1.63 16 36 H 0.18 0.61 8.06 -2.91 -0.02 0.58 16 Total: -1.00 -66.55 332.50 2.50 -64.05 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -2.24 Total: 16.43 kcal Atomic # 6 Polarization: 27.15 SS G_CDS: 3.79 Total: 30.94 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -3.77 Total: -90.31 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: 0.63 Total: -35.15 kcal Atomic # 9 Polarization: -27.34 SS G_CDS: 2.05 Total: -25.29 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.32 kcal Total: -66.55 2.50 -64.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680564339.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.351 kcal (2) G-P(sol) polarization free energy of solvation -66.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds