Wall clock time and date at job start Wed Apr 1 2020 05:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99894 * 2 1 4 4 H 1.48499 * 109.47023 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47018 * 120.00267 * 3 2 1 6 6 H 1.48498 * 109.46880 * 239.99650 * 3 2 1 7 7 C 1.37879 * 119.99619 * 180.27282 * 2 1 3 8 8 H 1.08000 * 119.99747 * 200.75664 * 7 2 1 9 9 C 1.50694 * 120.00510 * 20.76255 * 7 2 1 10 10 H 1.09002 * 109.46712 * 305.39262 * 9 7 2 11 11 N 1.46497 * 109.47320 * 185.39297 * 9 7 2 12 12 C 1.34783 * 119.99988 * 154.99785 * 11 9 7 13 13 O 1.21583 * 119.99880 * 0.02562 * 12 11 9 14 14 N 1.34774 * 119.99680 * 179.97438 * 12 11 9 15 15 N 1.40100 * 120.00111 * 0.02562 * 14 12 11 16 16 C 1.39684 * 119.99672 * 179.97438 * 15 14 12 17 17 C 1.38910 * 120.07270 * 359.72492 * 16 15 14 18 18 C 1.38110 * 119.91968 * 179.76784 * 17 16 15 19 19 C 1.38287 * 120.07327 * 0.48985 * 18 17 16 20 20 N 1.48028 * 119.92200 * 179.76769 * 19 18 17 21 21 O 1.21801 * 119.99791 * 180.02562 * 20 19 18 22 22 O 1.21792 * 120.00144 * 0.02562 * 20 19 18 23 23 C 1.38286 * 120.15341 * 359.78007 * 19 18 17 24 24 C 1.38109 * 120.07239 * 359.96801 * 23 19 18 25 25 C 1.52999 * 109.47389 * 65.38984 * 9 7 2 26 26 F 1.39895 * 109.47124 * 54.83140 * 25 9 7 27 27 F 1.39896 * 109.47342 * 174.83935 * 25 9 7 28 28 F 1.39903 * 109.47058 * 294.83544 * 25 9 7 29 29 H 0.97007 * 120.00535 * 175.54333 * 1 2 3 30 30 H 0.96998 * 120.00026 * 334.99640 * 11 9 7 31 31 H 0.97006 * 119.99868 * 180.02562 * 14 12 11 32 32 H 0.96996 * 119.99942 * 359.97438 * 15 14 12 33 33 H 1.07992 * 120.04241 * 359.97438 * 17 16 15 34 34 H 1.07997 * 119.96010 * 180.22625 * 18 17 16 35 35 H 1.07993 * 119.96420 * 179.97438 * 23 19 18 36 36 H 1.08000 * 120.03844 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1028 1.6963 -1.2125 7 6 2.0044 -1.1941 -0.0057 8 1 3.0318 -1.2260 0.3256 9 6 1.3244 -2.4546 -0.4743 10 1 0.4045 -2.6029 0.0913 11 7 2.2163 -3.5976 -0.2645 12 6 1.7029 -4.8354 -0.1198 13 8 0.4995 -5.0033 -0.1638 14 7 2.5235 -5.8870 0.0727 15 7 3.9102 -5.6935 0.1229 16 6 4.7606 -6.7834 0.3229 17 6 4.2327 -8.0589 0.4779 18 6 5.0767 -9.1350 0.6707 19 6 6.4452 -8.9423 0.7196 20 7 7.3465 -10.0973 0.9316 21 8 8.5520 -9.9291 0.9753 22 8 6.8825 -11.2158 1.0622 23 6 6.9737 -7.6731 0.5712 24 6 6.1357 -6.5933 0.3729 25 6 0.9935 -2.3324 -1.9631 26 9 2.1574 -2.0249 -2.6758 27 9 0.4699 -3.5444 -2.4255 28 9 0.0505 -1.3158 -2.1493 29 1 -0.4851 -0.8375 -0.0653 30 1 3.1764 -3.4637 -0.2298 31 1 2.1540 -6.7779 0.1765 32 1 4.2796 -4.8028 0.0187 33 1 3.1639 -8.2095 0.4444 34 1 4.6672 -10.1275 0.7877 35 1 8.0429 -7.5260 0.6103 36 1 6.5490 -5.6022 0.2575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680564340.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:13 Heat of formation + Delta-G solvation = -113.241666 kcal Electronic energy + Delta-G solvation = -30308.039259 eV Core-core repulsion = 25189.500017 eV Total energy + Delta-G solvation = -5118.539242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.98029 -46.52085 -46.44024 -42.24407 -40.60999 -39.56136 -36.71341 -36.63864 -35.31453 -33.10670 -32.54965 -31.75092 -29.56163 -28.28316 -25.92515 -24.68517 -23.93763 -22.44928 -22.39410 -20.79954 -19.58280 -19.52468 -18.88674 -18.63096 -17.73392 -17.59864 -17.42011 -17.17634 -16.78143 -16.20654 -15.56246 -15.40314 -15.03939 -14.79606 -14.22781 -14.13214 -14.05095 -13.75970 -13.68894 -13.43252 -13.18629 -12.94789 -12.80515 -12.64861 -12.50974 -12.36396 -11.93006 -11.65372 -11.59080 -11.31337 -11.29794 -11.24969 -10.97255 -10.40263 -10.31297 -10.04948 -9.86217 -9.72330 -8.88753 -8.64124 -7.96238 -6.94168 -4.73364 -0.25932 0.59082 1.19790 1.31512 1.48632 2.91180 2.95725 3.12445 3.18644 3.25870 3.42065 3.94895 3.97861 4.08971 4.14825 4.28699 4.44852 4.61843 4.72713 4.85901 5.20046 5.21533 5.27230 5.35371 5.42444 5.45455 5.51108 5.73418 5.95412 6.27988 6.30149 6.52894 6.76206 6.90975 7.21256 7.55518 7.84340 8.02466 8.23150 8.46080 8.97871 10.42633 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.002404 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.401056 B =11645.760165 C =12419.259586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.042 3.958 3 Si 1.072 2.928 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.643 4.643 8 H 0.074 0.926 9 C 0.250 3.750 10 H 0.083 0.917 11 N -0.714 5.714 12 C 0.708 3.292 13 O -0.558 6.558 14 N -0.541 5.541 15 N -0.520 5.520 16 C 0.274 3.726 17 C -0.201 4.201 18 C 0.004 3.996 19 C -0.113 4.113 20 N 0.043 4.957 21 O -0.178 6.178 22 O -0.179 6.179 23 C 0.003 3.997 24 C -0.192 4.192 25 C 0.413 3.587 26 F -0.194 7.194 27 F -0.206 7.206 28 F -0.175 7.175 29 H 0.279 0.721 30 H 0.392 0.608 31 H 0.432 0.568 32 H 0.432 0.568 33 H 0.142 0.858 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.479 -10.933 0.746 15.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.172 4.172 3 Si 0.898 3.102 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.678 4.678 8 H 0.092 0.908 9 C 0.143 3.857 10 H 0.101 0.899 11 N -0.368 5.368 12 C 0.408 3.592 13 O -0.430 6.430 14 N -0.299 5.299 15 N -0.243 5.243 16 C 0.163 3.837 17 C -0.225 4.225 18 C -0.016 4.016 19 C -0.200 4.200 20 N 0.557 4.443 21 O -0.390 6.390 22 O -0.391 6.391 23 C -0.017 4.017 24 C -0.216 4.216 25 C 0.357 3.643 26 F -0.176 7.176 27 F -0.188 7.188 28 F -0.157 7.157 29 H 0.091 0.909 30 H 0.227 0.773 31 H 0.278 0.722 32 H 0.276 0.724 33 H 0.159 0.841 34 H 0.171 0.829 35 H 0.173 0.827 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.624 -8.648 0.601 12.227 hybrid contribution 0.812 -1.944 -0.403 2.145 sum 9.435 -10.592 0.198 14.186 Atomic orbital electron populations 1.70764 1.07160 1.32507 1.37558 1.26030 0.95935 1.03069 0.92147 0.83486 0.75205 0.74437 0.77095 1.20203 1.20925 1.20611 1.21618 1.01747 0.91342 1.53125 0.90800 1.19738 0.94228 0.85640 0.86063 0.89935 1.45154 1.10407 1.05250 1.76010 1.15874 0.84603 0.80467 0.78259 1.91054 1.11017 1.82572 1.58322 1.44821 0.92586 1.11188 1.81263 1.43683 0.94650 1.08855 1.77159 1.18080 0.89481 0.86962 0.89152 1.20426 1.00586 0.90117 1.11341 1.20704 0.89902 1.00676 0.90337 1.20785 0.90289 0.86524 1.22359 1.43508 1.01493 1.02260 0.97076 1.94519 0.97556 1.91786 1.55164 1.94520 1.80191 1.10178 1.54210 1.20692 1.01720 0.88866 0.90429 1.20452 0.89924 1.00279 1.10943 1.23086 0.73842 0.72567 0.94809 1.93031 1.49911 1.93150 1.81487 1.93099 1.87426 1.46798 1.91430 1.93158 1.65730 1.60639 1.96142 0.90860 0.77312 0.72242 0.72355 0.84076 0.82908 0.82736 0.83159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.74 12.43 55.43 0.69 -22.05 16 2 C 0.04 1.03 4.72 -17.82 -0.08 0.94 16 3 Si 1.07 21.91 29.95 -169.99 -5.09 16.82 16 4 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.64 -15.04 8.21 -34.44 -0.28 -15.32 16 8 H 0.07 1.62 7.81 -52.49 -0.41 1.22 16 9 C 0.25 5.54 1.92 -69.09 -0.13 5.40 16 10 H 0.08 2.05 6.61 -51.93 -0.34 1.71 16 11 N -0.71 -12.40 4.99 -59.82 -0.30 -12.70 16 12 C 0.71 11.84 8.09 -86.91 -0.70 11.14 16 13 O -0.56 -11.56 15.79 5.29 0.08 -11.47 16 14 N -0.54 -6.21 6.22 27.63 0.17 -6.04 16 15 N -0.52 -4.52 6.45 32.41 0.21 -4.31 16 16 C 0.27 2.09 6.72 -83.78 -0.56 1.53 16 17 C -0.20 -1.48 9.48 -39.38 -0.37 -1.85 16 18 C 0.00 0.03 9.55 -39.61 -0.38 -0.35 16 19 C -0.11 -1.06 6.85 -79.91 -0.55 -1.61 16 20 N 0.04 0.51 4.45 33.98 0.15 0.66 16 21 O -0.18 -2.27 18.44 -29.46 -0.54 -2.81 16 22 O -0.18 -2.30 18.44 -29.46 -0.54 -2.85 16 23 C 0.00 0.03 9.55 -39.61 -0.38 -0.35 16 24 C -0.19 -1.24 9.90 -39.38 -0.39 -1.63 16 25 C 0.41 9.45 2.82 37.16 0.10 9.56 16 26 F -0.19 -4.28 16.87 2.25 0.04 -4.24 16 27 F -0.21 -4.64 15.54 2.25 0.04 -4.60 16 28 F -0.18 -4.36 14.13 2.25 0.03 -4.33 16 29 H 0.28 7.57 6.04 -40.82 -0.25 7.33 16 30 H 0.39 5.58 6.45 -40.82 -0.26 5.31 16 31 H 0.43 4.15 6.70 -182.59 -1.22 2.92 16 32 H 0.43 3.33 6.71 -182.60 -1.23 2.10 16 33 H 0.14 0.84 6.20 -52.49 -0.33 0.51 16 34 H 0.15 1.04 7.60 -52.49 -0.40 0.64 16 35 H 0.16 0.95 7.60 -52.49 -0.40 0.55 16 36 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 LS Contribution 332.63 15.07 5.01 5.01 Total: -1.00 -30.67 332.63 -7.84 -38.50 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -4.05 Total: 6.94 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -3.73 Total: 7.46 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.92 Total: -44.43 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -1.00 Total: -17.13 kcal Atomic # 9 Polarization: -13.27 SS G_CDS: 0.10 Total: -13.17 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.09 Total: 16.82 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.67 -7.84 -38.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680564340.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.739 kcal (2) G-P(sol) polarization free energy of solvation -30.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds