Wall clock time and date at job start Wed Apr 1 2020 05:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99894 * 2 1 4 4 H 1.48499 * 109.47023 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47018 * 120.00267 * 3 2 1 6 6 H 1.48498 * 109.46880 * 239.99650 * 3 2 1 7 7 C 1.37879 * 119.99619 * 180.27282 * 2 1 3 8 8 H 1.08000 * 119.99747 * 200.75664 * 7 2 1 9 9 C 1.50694 * 120.00510 * 20.76255 * 7 2 1 10 10 H 1.09002 * 109.46712 * 305.39262 * 9 7 2 11 11 N 1.46497 * 109.47320 * 185.39297 * 9 7 2 12 12 C 1.34783 * 119.99988 * 154.99785 * 11 9 7 13 13 O 1.21583 * 119.99880 * 0.02562 * 12 11 9 14 14 N 1.34774 * 119.99680 * 179.97438 * 12 11 9 15 15 N 1.40100 * 120.00111 * 0.02562 * 14 12 11 16 16 C 1.39684 * 119.99672 * 179.97438 * 15 14 12 17 17 C 1.38910 * 120.07270 * 359.72492 * 16 15 14 18 18 C 1.38110 * 119.91968 * 179.76784 * 17 16 15 19 19 C 1.38287 * 120.07327 * 0.48985 * 18 17 16 20 20 N 1.48028 * 119.92200 * 179.76769 * 19 18 17 21 21 O 1.21801 * 119.99791 * 180.02562 * 20 19 18 22 22 O 1.21792 * 120.00144 * 0.02562 * 20 19 18 23 23 C 1.38286 * 120.15341 * 359.78007 * 19 18 17 24 24 C 1.38109 * 120.07239 * 359.96801 * 23 19 18 25 25 C 1.52999 * 109.47389 * 65.38984 * 9 7 2 26 26 F 1.39895 * 109.47124 * 54.83140 * 25 9 7 27 27 F 1.39896 * 109.47342 * 174.83935 * 25 9 7 28 28 F 1.39903 * 109.47058 * 294.83544 * 25 9 7 29 29 H 0.97007 * 120.00535 * 175.54333 * 1 2 3 30 30 H 0.96998 * 120.00026 * 334.99640 * 11 9 7 31 31 H 0.97006 * 119.99868 * 180.02562 * 14 12 11 32 32 H 0.96996 * 119.99942 * 359.97438 * 15 14 12 33 33 H 1.07992 * 120.04241 * 359.97438 * 17 16 15 34 34 H 1.07997 * 119.96010 * 180.22625 * 18 17 16 35 35 H 1.07993 * 119.96420 * 179.97438 * 23 19 18 36 36 H 1.08000 * 120.03844 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7464 -0.0006 5 1 3.1028 1.6964 1.2125 6 1 3.1028 1.6963 -1.2125 7 6 2.0044 -1.1941 -0.0057 8 1 3.0318 -1.2260 0.3256 9 6 1.3244 -2.4546 -0.4743 10 1 0.4045 -2.6029 0.0913 11 7 2.2163 -3.5976 -0.2645 12 6 1.7029 -4.8354 -0.1198 13 8 0.4995 -5.0033 -0.1638 14 7 2.5235 -5.8870 0.0727 15 7 3.9102 -5.6935 0.1229 16 6 4.7606 -6.7834 0.3229 17 6 4.2327 -8.0589 0.4779 18 6 5.0767 -9.1350 0.6707 19 6 6.4452 -8.9423 0.7196 20 7 7.3465 -10.0973 0.9316 21 8 8.5520 -9.9291 0.9753 22 8 6.8825 -11.2158 1.0622 23 6 6.9737 -7.6731 0.5712 24 6 6.1357 -6.5933 0.3729 25 6 0.9935 -2.3324 -1.9631 26 9 2.1574 -2.0249 -2.6758 27 9 0.4699 -3.5444 -2.4255 28 9 0.0505 -1.3158 -2.1493 29 1 -0.4851 -0.8375 -0.0653 30 1 3.1764 -3.4637 -0.2298 31 1 2.1540 -6.7779 0.1765 32 1 4.2796 -4.8028 0.0187 33 1 3.1639 -8.2095 0.4444 34 1 4.6672 -10.1275 0.7877 35 1 8.0429 -7.5260 0.6103 36 1 6.5490 -5.6022 0.2575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680564340.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:13 Heat of formation + Delta-G solvation = -132.630871 kcal Electronic energy + Delta-G solvation = -30308.880038 eV Core-core repulsion = 25189.500017 eV Total energy + Delta-G solvation = -5119.380021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.088 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.82358 -48.35681 -48.29921 -43.09747 -41.65826 -40.50515 -37.67203 -37.54840 -36.94677 -34.66350 -33.56573 -32.38760 -30.49787 -29.84313 -26.74834 -26.54314 -24.77407 -23.87166 -23.20418 -22.17421 -20.79602 -20.31528 -19.82671 -19.57210 -19.34607 -19.19093 -18.98760 -18.46404 -18.23206 -17.31955 -16.79139 -16.49215 -15.97147 -15.65510 -15.61826 -15.36040 -15.25255 -14.97610 -14.85925 -14.79583 -14.74692 -14.63604 -14.50475 -14.41369 -14.34149 -13.44996 -13.14559 -13.01686 -12.65236 -12.55526 -12.44048 -12.21529 -12.21225 -11.94126 -11.82269 -11.44624 -10.96676 -10.49552 -10.44086 -10.39592 -8.85843 -8.76742 -6.64524 -1.08389 0.02029 0.40729 0.50554 0.63008 1.56004 1.62686 1.68482 1.77371 1.84319 2.19432 2.34735 2.48955 2.89704 3.26222 3.38586 3.41763 3.55090 3.59024 3.68363 3.82281 3.97278 4.26252 4.47215 4.60085 4.69488 4.82191 4.90473 4.99764 5.04523 5.19853 5.25355 5.48099 5.80557 6.00666 6.10929 6.28967 6.60446 6.86452 7.11975 7.21630 8.50003 Molecular weight = 348.09amu Principal moments of inertia in cm(-1) A = 0.019195 B = 0.002404 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.401056 B =11645.760165 C =12419.259586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C -0.004 4.004 3 Si 1.113 2.887 4 H -0.290 1.290 5 H -0.258 1.258 6 H -0.268 1.268 7 C -0.641 4.641 8 H 0.092 0.908 9 C 0.257 3.743 10 H 0.050 0.950 11 N -0.708 5.708 12 C 0.708 3.292 13 O -0.603 6.603 14 N -0.523 5.523 15 N -0.515 5.515 16 C 0.272 3.728 17 C -0.199 4.199 18 C 0.002 3.998 19 C -0.126 4.126 20 N 0.044 4.956 21 O -0.195 6.195 22 O -0.207 6.207 23 C 0.003 3.997 24 C -0.175 4.175 25 C 0.413 3.587 26 F -0.187 7.187 27 F -0.204 7.204 28 F -0.190 7.190 29 H 0.264 0.736 30 H 0.409 0.591 31 H 0.443 0.557 32 H 0.439 0.561 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.169 0.831 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.543 -10.472 0.790 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.211 4.211 3 Si 0.933 3.067 4 H -0.215 1.215 5 H -0.183 1.183 6 H -0.193 1.193 7 C -0.676 4.676 8 H 0.110 0.890 9 C 0.148 3.852 10 H 0.068 0.932 11 N -0.364 5.364 12 C 0.408 3.592 13 O -0.479 6.479 14 N -0.279 5.279 15 N -0.242 5.242 16 C 0.163 3.837 17 C -0.223 4.223 18 C -0.018 4.018 19 C -0.213 4.213 20 N 0.552 4.448 21 O -0.405 6.405 22 O -0.414 6.414 23 C -0.018 4.018 24 C -0.199 4.199 25 C 0.357 3.643 26 F -0.169 7.169 27 F -0.186 7.186 28 F -0.171 7.171 29 H 0.075 0.925 30 H 0.247 0.753 31 H 0.291 0.709 32 H 0.284 0.716 33 H 0.173 0.827 34 H 0.178 0.822 35 H 0.186 0.814 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 10.782 -8.298 0.667 13.622 hybrid contribution 0.210 -2.159 -0.431 2.211 sum 10.992 -10.457 0.236 15.173 Atomic orbital electron populations 1.70878 1.08378 1.31618 1.40611 1.27339 0.95886 1.06531 0.91314 0.82987 0.74407 0.70721 0.78569 1.21536 1.18263 1.19271 1.21936 1.02350 0.91430 1.51920 0.89028 1.19300 0.93749 0.87035 0.85091 0.93192 1.44806 1.10700 1.04542 1.76327 1.15856 0.84411 0.80884 0.78084 1.91029 1.13288 1.83449 1.60087 1.44345 0.93907 1.10208 1.79413 1.43641 0.92931 1.09638 1.78003 1.18234 0.89810 0.86610 0.89074 1.20601 1.01279 0.89871 1.10538 1.20835 0.89457 1.01405 0.90136 1.21052 0.90438 0.86190 1.23620 1.43869 1.01638 1.02751 0.96533 1.94495 0.98413 1.91909 1.55717 1.94506 1.80159 1.11318 1.55407 1.20929 1.02709 0.88190 0.89936 1.20734 0.89062 1.01257 1.08876 1.23118 0.73741 0.72249 0.95241 1.93035 1.49342 1.93104 1.81372 1.93098 1.87466 1.46609 1.91437 1.93132 1.66409 1.61345 1.96249 0.92473 0.75315 0.70899 0.71553 0.82711 0.82154 0.81356 0.80139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.93 12.43 21.45 0.27 -47.67 16 2 C 0.00 -0.18 4.72 84.66 0.40 0.21 16 3 Si 1.11 42.61 29.95 68.60 2.05 44.67 16 4 H -0.29 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 6 H -0.27 -9.63 7.11 99.48 0.71 -8.93 16 7 C -0.64 -29.12 8.21 25.60 0.21 -28.91 16 8 H 0.09 3.76 7.81 -2.91 -0.02 3.74 16 9 C 0.26 11.28 1.92 44.24 0.09 11.37 16 10 H 0.05 2.56 6.61 -2.39 -0.02 2.55 16 11 N -0.71 -23.47 4.99 -461.42 -2.30 -25.77 16 12 C 0.71 22.76 8.09 179.05 1.45 24.21 16 13 O -0.60 -24.98 15.79 -3.98 -0.06 -25.04 16 14 N -0.52 -10.74 6.22 -184.75 -1.15 -11.89 16 15 N -0.52 -7.22 6.45 -51.36 -0.33 -7.55 16 16 C 0.27 3.20 6.72 38.21 0.26 3.46 16 17 C -0.20 -2.38 9.48 22.40 0.21 -2.17 16 18 C 0.00 0.03 9.55 22.25 0.21 0.24 16 19 C -0.13 -2.16 6.85 36.40 0.25 -1.91 16 20 N 0.04 1.03 4.45 -46.40 -0.21 0.82 16 21 O -0.19 -4.88 18.44 18.89 0.35 -4.53 16 22 O -0.21 -5.34 18.44 18.90 0.35 -4.99 16 23 C 0.00 0.03 9.55 22.25 0.21 0.25 16 24 C -0.18 -1.58 9.90 22.40 0.22 -1.36 16 25 C 0.41 18.76 2.82 71.98 0.20 18.96 16 26 F -0.19 -7.95 16.87 44.97 0.76 -7.19 16 27 F -0.20 -9.17 15.54 44.97 0.70 -8.47 16 28 F -0.19 -9.57 14.13 44.97 0.64 -8.93 16 29 H 0.26 14.82 6.04 -92.70 -0.56 14.26 16 30 H 0.41 10.49 6.45 -92.71 -0.60 9.89 16 31 H 0.44 7.44 6.70 -213.31 -1.43 6.01 16 32 H 0.44 5.06 6.71 -213.32 -1.43 3.63 16 33 H 0.16 1.39 6.20 -2.91 -0.02 1.38 16 34 H 0.16 1.97 7.60 -2.91 -0.02 1.94 16 35 H 0.17 1.60 7.60 -2.91 -0.02 1.58 16 36 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 Total: -1.00 -67.36 332.63 2.75 -64.61 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -2.02 Total: 17.59 kcal Atomic # 6 Polarization: 20.62 SS G_CDS: 3.71 Total: 24.34 kcal Atomic # 7 Polarization: -88.33 SS G_CDS: -3.72 Total: -92.05 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: 0.63 Total: -34.56 kcal Atomic # 9 Polarization: -26.68 SS G_CDS: 2.09 Total: -24.59 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.05 Total: 44.67 kcal Total: -67.36 2.75 -64.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680564340.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.022 kcal (2) G-P(sol) polarization free energy of solvation -67.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds