Wall clock time and date at job start Wed Apr 1 2020 05:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99838 * 2 1 4 4 H 1.48501 * 109.46941 * 269.99877 * 3 2 1 5 5 H 1.48500 * 109.46987 * 29.99804 * 3 2 1 6 6 H 1.48500 * 109.47033 * 149.99998 * 3 2 1 7 7 C 1.38811 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99737 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99615 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99452 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46915 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47304 * 179.97438 * 11 10 9 13 13 C 1.46496 * 120.00271 * 270.00475 * 12 11 10 14 14 C 1.52998 * 109.46921 * 269.99859 * 13 12 11 15 15 O 1.42899 * 109.47283 * 64.99804 * 14 13 12 16 16 C 1.34777 * 119.99854 * 89.99731 * 12 11 10 17 17 O 1.21583 * 119.99947 * 0.02562 * 16 12 11 18 18 C 1.47617 * 120.00105 * 180.27889 * 16 12 11 19 19 C 1.39883 * 120.17151 * 89.44722 * 18 16 12 20 20 F 1.35105 * 120.07269 * 0.02562 * 19 18 16 21 21 C 1.38221 * 119.84928 * 179.78962 * 19 18 16 22 22 C 1.38289 * 120.17599 * 0.49416 * 21 19 18 23 23 C 1.38528 * 120.33677 * 359.73876 * 22 21 19 24 24 F 1.35100 * 119.92277 * 180.02562 * 23 22 21 25 25 C 1.38282 * 120.15498 * 0.02562 * 23 22 21 26 26 Cl 1.73600 * 120.09144 * 180.02562 * 25 23 22 27 27 H 0.96999 * 120.00165 * 0.02562 * 1 2 3 28 28 H 0.96991 * 120.00362 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47567 * 59.99808 * 10 9 7 30 30 H 1.09005 * 109.47076 * 299.99302 * 10 9 7 31 31 H 1.08994 * 109.47070 * 60.00052 * 11 10 9 32 32 H 1.08996 * 109.47306 * 299.99796 * 11 10 9 33 33 H 1.08997 * 109.47346 * 29.99460 * 13 12 11 34 34 H 1.09004 * 109.47612 * 149.99559 * 13 12 11 35 35 H 1.09003 * 109.46986 * 184.99989 * 14 13 12 36 36 H 1.09003 * 109.47039 * 304.99528 * 14 13 12 37 37 H 0.96701 * 113.99824 * 180.02562 * 15 14 13 38 38 H 1.07998 * 119.90910 * 180.20802 * 21 19 18 39 39 H 1.08000 * 119.82746 * 179.71778 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0638 -4.8196 0.0021 12 7 1.7963 -6.0884 0.0026 13 6 2.1627 -6.7233 -1.2658 14 6 1.0410 -7.6655 -1.7072 15 8 -0.1355 -6.9056 -1.9907 16 6 2.1332 -6.6715 1.1700 17 8 1.8288 -6.1448 2.2227 18 6 2.8766 -7.9468 1.1706 19 6 4.2754 -7.9452 1.1619 20 9 4.9510 -6.7752 1.1535 21 6 4.9648 -9.1432 1.1670 22 6 4.2754 -10.3419 1.1702 23 6 2.8901 -10.3524 1.1739 24 9 2.2250 -11.5283 1.1776 25 6 2.1865 -9.1620 1.1739 26 17 0.4506 -9.1769 1.1792 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.6841 -3.7141 0.8921 30 1 2.6853 -3.7149 -0.8879 31 1 0.4375 -4.7625 -0.8882 32 1 0.4368 -4.7613 0.8917 33 1 2.3132 -5.9565 -2.0258 34 1 3.0839 -7.2911 -1.1352 35 1 1.3503 -8.2041 -2.6030 36 1 0.8300 -8.3779 -0.9097 37 1 -0.8892 -7.4396 -2.2768 38 1 6.0448 -9.1430 1.1637 39 1 4.8197 -11.2747 1.1695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724680138.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:04 Heat of formation + Delta-G solvation = -124.940774 kcal Electronic energy + Delta-G solvation = -28863.611432 eV Core-core repulsion = 24276.441597 eV Total energy + Delta-G solvation = -4587.169835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.54746 -49.43097 -40.55823 -38.77150 -37.27581 -37.09822 -35.60487 -34.31494 -32.23907 -31.25639 -30.63606 -29.52083 -27.55985 -25.03508 -23.62848 -23.47296 -22.95969 -21.53329 -19.87554 -18.41943 -18.09657 -18.04909 -17.64694 -17.16813 -16.73862 -16.53932 -16.10381 -15.83466 -15.47912 -15.22914 -14.96311 -14.70897 -14.44542 -14.05458 -13.87210 -13.60879 -13.45813 -13.30693 -13.06700 -13.03672 -12.77964 -12.49831 -12.23325 -12.04276 -11.64179 -11.49907 -11.19275 -10.90392 -10.84608 -10.60166 -10.19789 -10.05248 -10.02392 -9.67399 -9.61481 -9.18999 -8.80552 -8.58718 -6.85965 -5.69278 -2.98264 0.05465 0.15645 1.31428 2.32992 2.46678 2.80916 3.42652 3.48893 3.49227 3.53679 3.56116 3.83304 4.03860 4.11741 4.21864 4.52542 4.67148 4.86226 4.93930 5.02246 5.06954 5.11601 5.19081 5.27377 5.29842 5.57273 5.60545 5.77151 5.91178 5.93594 6.10012 6.23974 6.53732 6.77981 6.96532 7.33430 7.51707 7.76684 8.01863 8.49126 9.60018 10.16740 10.52214 11.53686 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.016842 B = 0.003022 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.105025 B = 9262.885443 C =10085.578224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.143 3.857 11 C 0.112 3.888 12 N -0.581 5.581 13 C 0.106 3.894 14 C 0.048 3.952 15 O -0.558 6.558 16 C 0.557 3.443 17 O -0.502 6.502 18 C -0.116 4.116 19 C 0.135 3.865 20 F -0.111 7.111 21 C -0.118 4.118 22 C -0.101 4.101 23 C 0.101 3.899 24 F -0.118 7.118 25 C -0.029 4.029 26 Cl -0.012 7.012 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.022 0.978 30 H 0.018 0.982 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.377 0.623 38 H 0.161 0.839 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.525 -29.186 -2.636 30.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.374 5.374 10 C 0.014 3.986 11 C -0.009 4.009 12 N -0.313 5.313 13 C -0.018 4.018 14 C -0.032 4.032 15 O -0.363 6.363 16 C 0.342 3.658 17 O -0.377 6.377 18 C -0.122 4.122 19 C 0.114 3.886 20 F -0.089 7.089 21 C -0.137 4.137 22 C -0.120 4.120 23 C 0.081 3.919 24 F -0.096 7.096 25 C -0.058 4.058 26 Cl 0.017 6.983 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.223 0.777 38 H 0.179 0.821 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.707 -28.247 -1.890 29.340 hybrid contribution -0.275 0.339 -0.209 0.484 sum 7.432 -27.908 -2.100 28.957 Atomic orbital electron populations 1.69668 1.05082 1.25601 1.57844 1.24744 0.95548 0.97650 1.03082 0.86167 0.78665 0.83795 0.77443 1.21748 1.21757 1.20764 1.19208 0.91003 0.83981 1.42553 0.91218 1.42188 1.05890 0.99704 1.89583 1.20914 0.93877 0.85771 0.98046 1.21824 0.94545 0.80358 1.04218 1.47714 1.55819 1.23284 1.04440 1.21717 0.95825 0.97585 0.86671 1.22889 0.86962 0.93985 0.99315 1.86576 1.22218 1.37335 1.90171 1.17700 0.80029 0.83262 0.84856 1.90896 1.53092 1.63133 1.30552 1.19877 0.92852 0.94286 1.05144 1.17486 0.87666 0.82628 1.00809 1.91651 1.79112 1.45102 1.93076 1.21109 1.02054 0.89498 1.01011 1.21100 0.91107 0.99980 0.99789 1.17179 0.90057 0.80123 1.04573 1.91587 1.80504 1.43886 1.93672 1.20689 0.87437 0.92058 1.05583 1.98439 1.05488 1.98599 1.95759 0.93530 0.78191 0.96040 0.96432 0.88895 0.89762 0.88264 0.89796 0.92808 0.92970 0.77677 0.82096 0.82108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.21 13.06 55.49 0.72 -28.49 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 23.19 29.55 -169.99 -5.02 18.17 16 4 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.73 -19.78 5.60 -59.91 -0.34 -20.12 16 10 C 0.14 3.18 6.58 -4.04 -0.03 3.15 16 11 C 0.11 2.09 5.34 -4.04 -0.02 2.07 16 12 N -0.58 -8.91 2.44 -174.89 -0.43 -9.33 16 13 C 0.11 1.21 5.64 -4.04 -0.02 1.19 16 14 C 0.05 0.46 7.39 37.16 0.27 0.73 16 15 O -0.56 -6.23 12.48 -35.23 -0.44 -6.67 16 16 C 0.56 9.02 5.81 -12.43 -0.07 8.95 16 17 O -0.50 -10.30 16.69 5.29 0.09 -10.21 16 18 C -0.12 -1.42 3.93 -104.89 -0.41 -1.83 16 19 C 0.13 1.38 6.83 -38.97 -0.27 1.11 16 20 F -0.11 -1.39 16.83 2.25 0.04 -1.35 16 21 C -0.12 -0.72 10.01 -39.57 -0.40 -1.12 16 22 C -0.10 -0.54 10.01 -39.46 -0.39 -0.93 16 23 C 0.10 0.81 7.26 -39.46 -0.29 0.53 16 24 F -0.12 -0.98 16.83 2.25 0.04 -0.94 16 25 C -0.03 -0.30 5.78 -39.00 -0.23 -0.53 16 26 Cl -0.01 -0.14 25.12 -51.86 -1.30 -1.44 16 27 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 28 H 0.38 10.84 7.67 -40.82 -0.31 10.53 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 1.70 7.11 -51.93 -0.37 1.33 16 32 H 0.08 1.73 7.42 -51.93 -0.39 1.35 16 33 H 0.10 1.16 8.07 -51.93 -0.42 0.75 16 34 H 0.08 0.78 6.52 -51.93 -0.34 0.44 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.51 4.45 -51.93 -0.23 0.27 16 37 H 0.38 2.60 9.12 45.56 0.42 3.01 16 38 H 0.16 0.51 8.06 -52.49 -0.42 0.09 16 39 H 0.16 0.34 8.06 -52.49 -0.42 -0.08 16 LS Contribution 357.03 15.07 5.38 5.38 Total: -1.00 -36.64 357.03 -6.66 -43.29 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -3.30 Total: 6.05 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -2.10 Total: 5.67 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: -0.04 Total: -57.94 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.35 Total: -16.88 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.08 Total: -2.30 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.30 Total: -1.44 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.64 -6.66 -43.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724680138.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.649 kcal (2) G-P(sol) polarization free energy of solvation -36.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds