Wall clock time and date at job start Wed Apr 1 2020 05:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86806 * 119.99838 * 2 1 4 4 H 1.48501 * 109.46941 * 269.99877 * 3 2 1 5 5 H 1.48500 * 109.46987 * 29.99804 * 3 2 1 6 6 H 1.48500 * 109.47033 * 149.99998 * 3 2 1 7 7 C 1.38811 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99737 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99615 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99452 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46915 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.47304 * 179.97438 * 11 10 9 13 13 C 1.46496 * 120.00271 * 270.00475 * 12 11 10 14 14 C 1.52998 * 109.46921 * 269.99859 * 13 12 11 15 15 O 1.42899 * 109.47283 * 64.99804 * 14 13 12 16 16 C 1.34777 * 119.99854 * 89.99731 * 12 11 10 17 17 O 1.21583 * 119.99947 * 0.02562 * 16 12 11 18 18 C 1.47617 * 120.00105 * 180.27889 * 16 12 11 19 19 C 1.39883 * 120.17151 * 89.44722 * 18 16 12 20 20 F 1.35105 * 120.07269 * 0.02562 * 19 18 16 21 21 C 1.38221 * 119.84928 * 179.78962 * 19 18 16 22 22 C 1.38289 * 120.17599 * 0.49416 * 21 19 18 23 23 C 1.38528 * 120.33677 * 359.73876 * 22 21 19 24 24 F 1.35100 * 119.92277 * 180.02562 * 23 22 21 25 25 C 1.38282 * 120.15498 * 0.02562 * 23 22 21 26 26 Cl 1.73600 * 120.09144 * 180.02562 * 25 23 22 27 27 H 0.96999 * 120.00165 * 0.02562 * 1 2 3 28 28 H 0.96991 * 120.00362 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47567 * 59.99808 * 10 9 7 30 30 H 1.09005 * 109.47076 * 299.99302 * 10 9 7 31 31 H 1.08994 * 109.47070 * 60.00052 * 11 10 9 32 32 H 1.08996 * 109.47306 * 299.99796 * 11 10 9 33 33 H 1.08997 * 109.47346 * 29.99460 * 13 12 11 34 34 H 1.09004 * 109.47612 * 149.99559 * 13 12 11 35 35 H 1.09003 * 109.46986 * 184.99989 * 14 13 12 36 36 H 1.09003 * 109.47039 * 304.99528 * 14 13 12 37 37 H 0.96701 * 113.99824 * 180.02562 * 15 14 13 38 38 H 1.07998 * 119.90910 * 180.20802 * 21 19 18 39 39 H 1.08000 * 119.82746 * 179.71778 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0638 -4.8196 0.0021 12 7 1.7963 -6.0884 0.0026 13 6 2.1627 -6.7233 -1.2658 14 6 1.0410 -7.6655 -1.7072 15 8 -0.1355 -6.9056 -1.9907 16 6 2.1332 -6.6715 1.1700 17 8 1.8288 -6.1448 2.2227 18 6 2.8766 -7.9468 1.1706 19 6 4.2754 -7.9452 1.1619 20 9 4.9510 -6.7752 1.1535 21 6 4.9648 -9.1432 1.1670 22 6 4.2754 -10.3419 1.1702 23 6 2.8901 -10.3524 1.1739 24 9 2.2250 -11.5283 1.1776 25 6 2.1865 -9.1620 1.1739 26 17 0.4506 -9.1769 1.1792 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.6841 -3.7141 0.8921 30 1 2.6853 -3.7149 -0.8879 31 1 0.4375 -4.7625 -0.8882 32 1 0.4368 -4.7613 0.8917 33 1 2.3132 -5.9565 -2.0258 34 1 3.0839 -7.2911 -1.1352 35 1 1.3503 -8.2041 -2.6030 36 1 0.8300 -8.3779 -0.9097 37 1 -0.8892 -7.4396 -2.2768 38 1 6.0448 -9.1430 1.1637 39 1 4.8197 -11.2747 1.1695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724680138.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:03 Heat of formation + Delta-G solvation = -152.515661 kcal Electronic energy + Delta-G solvation = -28864.807169 eV Core-core repulsion = 24276.441597 eV Total energy + Delta-G solvation = -4588.365572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.084 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.26882 -50.17445 -41.64032 -39.63587 -38.26795 -37.89762 -37.13147 -35.98700 -33.68278 -32.63163 -31.34634 -30.79602 -29.08848 -26.34215 -25.08098 -24.37697 -23.85164 -23.25199 -20.98571 -19.45687 -19.15395 -18.86964 -18.78200 -18.46952 -17.75635 -17.49014 -17.11698 -16.72514 -16.59826 -16.28726 -16.21180 -15.65698 -15.56407 -15.44144 -15.19305 -15.13187 -14.77162 -14.47430 -14.26692 -13.96717 -13.90619 -13.55013 -13.13815 -12.96720 -12.92764 -12.82656 -12.73630 -12.51691 -12.39941 -12.17350 -12.14660 -11.90148 -11.36110 -11.00389 -10.82617 -10.37655 -9.92915 -9.86454 -9.09648 -7.98822 -5.30608 -0.62526 -0.49550 0.55772 1.13967 1.44702 1.48390 1.56470 1.62044 1.90719 2.53705 2.69317 2.78334 3.04405 3.30440 3.33989 3.46419 3.59427 3.82823 3.97080 4.00731 4.07541 4.19834 4.27042 4.38112 4.40937 4.43463 4.50302 4.58734 4.67669 4.75150 4.78924 4.96071 5.00698 5.31703 5.34662 5.44442 6.10938 6.21786 6.78010 6.90010 7.27799 7.97951 8.24813 9.24675 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.016842 B = 0.003022 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.105025 B = 9262.885443 C =10085.578224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.981 3.019 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.253 4.253 8 H 0.073 0.927 9 N -0.742 5.742 10 C 0.151 3.849 11 C 0.132 3.868 12 N -0.579 5.579 13 C 0.097 3.903 14 C 0.050 3.950 15 O -0.585 6.585 16 C 0.556 3.444 17 O -0.562 6.562 18 C -0.139 4.139 19 C 0.117 3.883 20 F -0.131 7.131 21 C -0.091 4.091 22 C -0.070 4.070 23 C 0.105 3.895 24 F -0.118 7.118 25 C -0.039 4.039 26 Cl -0.031 7.031 27 H 0.254 0.746 28 H 0.375 0.625 29 H 0.000 1.000 30 H 0.030 0.970 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.052 0.948 37 H 0.394 0.606 38 H 0.201 0.799 39 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.221 -31.714 -3.688 33.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.809 3.191 4 H -0.207 1.207 5 H -0.218 1.218 6 H -0.196 1.196 7 C -0.384 4.384 8 H 0.091 0.909 9 N -0.385 5.385 10 C 0.023 3.977 11 C 0.009 3.991 12 N -0.310 5.310 13 C -0.025 4.025 14 C -0.028 4.028 15 O -0.393 6.393 16 C 0.343 3.657 17 O -0.440 6.440 18 C -0.144 4.144 19 C 0.097 3.903 20 F -0.110 7.110 21 C -0.110 4.110 22 C -0.088 4.088 23 C 0.084 3.916 24 F -0.096 7.096 25 C -0.068 4.068 26 Cl -0.002 7.002 27 H 0.063 0.937 28 H 0.207 0.793 29 H 0.018 0.982 30 H 0.048 0.952 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.243 0.757 38 H 0.218 0.782 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 10.428 -30.839 -2.988 32.692 hybrid contribution -1.064 0.985 0.109 1.454 sum 9.364 -29.854 -2.880 31.421 Atomic orbital electron populations 1.69833 1.06701 1.26383 1.58878 1.25667 0.96531 1.01321 1.03014 0.85044 0.77534 0.78816 0.77750 1.20666 1.21835 1.19607 1.19595 0.91426 0.85131 1.42297 0.90859 1.42367 1.05653 1.00882 1.89593 1.20918 0.94186 0.85389 0.97184 1.21334 0.93580 0.81148 1.03065 1.47761 1.55028 1.22029 1.06144 1.22065 0.97879 0.98001 0.84533 1.22908 0.85945 0.93242 1.00722 1.86521 1.23451 1.38897 1.90426 1.18331 0.79184 0.84305 0.83911 1.90847 1.55461 1.65213 1.32507 1.19507 0.93563 0.92486 1.08806 1.17852 0.86941 0.83412 1.02110 1.91603 1.79295 1.46622 1.93444 1.21530 1.03741 0.87635 0.98069 1.21625 0.89654 1.01461 0.96102 1.17352 0.91001 0.79114 1.04095 1.91598 1.80805 1.43609 1.93608 1.20739 0.86568 0.92528 1.06939 1.98429 1.07181 1.98633 1.95962 0.93727 0.79269 0.98224 0.95242 0.88384 0.92422 0.88611 0.87270 0.89421 0.92974 0.75706 0.78170 0.77459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.88 13.06 21.65 0.28 -61.59 16 2 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 3 Si 0.98 48.06 29.55 68.60 2.03 50.09 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.25 -15.23 9.99 84.03 0.84 -14.40 16 8 H 0.07 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.74 -41.80 5.60 -343.45 -1.92 -43.72 16 10 C 0.15 7.04 6.58 86.38 0.57 7.60 16 11 C 0.13 5.21 5.34 86.38 0.46 5.68 16 12 N -0.58 -18.41 2.44 -825.49 -2.01 -20.42 16 13 C 0.10 2.17 5.64 86.38 0.49 2.65 16 14 C 0.05 0.91 7.39 71.98 0.53 1.44 16 15 O -0.58 -12.85 12.48 -148.98 -1.86 -14.71 16 16 C 0.56 18.81 5.81 86.72 0.50 19.31 16 17 O -0.56 -24.74 16.69 -3.98 -0.07 -24.81 16 18 C -0.14 -3.32 3.93 -20.04 -0.08 -3.40 16 19 C 0.12 2.19 6.83 22.66 0.15 2.34 16 20 F -0.13 -3.21 16.83 44.97 0.76 -2.45 16 21 C -0.09 -0.70 10.01 22.28 0.22 -0.47 16 22 C -0.07 -0.38 10.01 22.35 0.22 -0.15 16 23 C 0.10 1.34 7.26 22.35 0.16 1.51 16 24 F -0.12 -1.60 16.83 44.97 0.76 -0.84 16 25 C -0.04 -0.78 5.78 22.64 0.13 -0.64 16 26 Cl -0.03 -0.72 25.12 -2.72 -0.07 -0.78 16 27 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 28 H 0.38 22.18 7.67 -92.72 -0.71 21.47 16 29 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.10 3.75 7.11 -2.39 -0.02 3.74 16 32 H 0.06 2.58 7.42 -2.39 -0.02 2.56 16 33 H 0.10 2.19 8.07 -2.39 -0.02 2.18 16 34 H 0.11 1.86 6.52 -2.38 -0.02 1.84 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 0.96 4.45 -2.39 -0.01 0.95 16 37 H 0.39 5.21 9.12 -74.06 -0.68 4.54 16 38 H 0.20 0.03 8.06 -2.91 -0.02 0.01 16 39 H 0.21 -0.68 8.06 -2.91 -0.02 -0.71 16 Total: -1.00 -84.22 357.03 2.32 -81.89 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -0.24 Total: 19.82 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: 4.67 Total: 17.53 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -3.65 Total: -125.74 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -1.93 Total: -39.52 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 1.51 Total: -3.29 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.07 Total: -0.78 kcal Total: -84.22 2.32 -81.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724680138.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.623 kcal (2) G-P(sol) polarization free energy of solvation -84.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds