Wall clock time and date at job start Wed Apr 1 2020 04:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86807 * 119.99903 * 2 1 4 4 H 1.48499 * 109.47285 * 270.00361 * 3 2 1 5 5 H 1.48500 * 109.46854 * 30.00538 * 3 2 1 6 6 H 1.48491 * 109.46829 * 150.00046 * 3 2 1 7 7 C 1.38794 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99725 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.81010 * 99.99881 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46757 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00486 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99816 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00189 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47442 * 180.02562 * 14 13 11 16 16 N 1.46497 * 109.47442 * 180.02562 * 15 14 13 17 17 C 1.34776 * 120.00189 * 179.97438 * 16 15 14 18 18 O 1.21704 * 119.99998 * 0.02562 * 17 16 15 19 19 C 1.46653 * 120.00321 * 180.02562 * 17 16 15 20 20 C 1.36544 * 125.98987 * 180.02562 * 19 17 16 21 21 C 1.40365 * 106.70793 * 180.02562 * 20 19 17 22 22 C 1.35130 * 107.11495 * 359.97438 * 21 20 19 23 23 C 1.50706 * 125.61365 * 180.02562 * 22 21 20 24 24 F 1.39897 * 109.47068 * 299.99651 * 23 22 21 25 25 F 1.39895 * 109.47042 * 59.99960 * 23 22 21 26 26 O 1.33928 * 108.76701 * 0.26306 * 22 21 20 27 27 H 0.97007 * 120.00122 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46735 * 60.00660 * 10 9 7 29 29 H 1.08999 * 109.47163 * 300.00191 * 10 9 7 30 30 H 0.97004 * 119.99955 * 0.02562 * 13 11 10 31 31 H 1.09005 * 109.47123 * 60.00454 * 14 13 11 32 32 H 1.08999 * 109.47235 * 300.00206 * 14 13 11 33 33 H 1.09006 * 109.47242 * 60.00189 * 15 14 13 34 34 H 1.09006 * 109.47496 * 300.00508 * 15 14 13 35 35 H 0.97000 * 120.00405 * 0.02562 * 16 15 14 36 36 H 1.07994 * 126.64880 * 359.97438 * 20 19 17 37 37 H 1.08006 * 126.44356 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.46953 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1292 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9873 -5.3026 -0.0012 12 8 0.7911 -5.5023 -0.0021 13 7 2.8441 -6.3431 -0.0018 14 6 2.3304 -7.7150 -0.0019 15 6 3.5024 -8.6985 -0.0020 16 7 2.9887 -10.0704 -0.0026 17 6 3.8454 -11.1108 -0.0034 18 8 5.0459 -10.9106 -0.0030 19 6 3.3312 -12.4843 -0.0046 20 6 4.0845 -13.6231 -0.0050 21 6 3.1859 -14.7014 -0.0068 22 6 1.9392 -14.1800 -0.0069 23 6 0.6569 -14.9718 -0.0081 24 9 0.6070 -15.7770 -1.1511 25 9 0.6061 -15.7788 1.1334 26 8 2.0309 -12.8439 -0.0111 27 1 -0.4851 0.8401 -0.0004 28 1 3.1244 -3.7313 0.8895 29 1 3.1245 -3.7313 -0.8905 30 1 3.8009 -6.1834 -0.0015 31 1 1.7214 -7.8749 -0.8917 32 1 1.7222 -7.8753 0.8883 33 1 4.1111 -8.5385 0.8880 34 1 4.1111 -8.5384 -0.8920 35 1 2.0319 -10.2301 -0.0033 36 1 5.1628 -13.6827 -0.0048 37 1 3.4426 -15.7505 -0.0072 38 1 -0.1922 -14.2883 -0.0075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001736672717.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:57 Heat of formation + Delta-G solvation = -154.662017 kcal Electronic energy + Delta-G solvation = -25716.196104 eV Core-core repulsion = 21129.781166 eV Total energy + Delta-G solvation = -4586.414938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.079 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.79179 -47.79441 -43.47958 -40.12296 -39.22978 -36.23459 -34.29638 -33.81020 -32.46007 -31.97650 -30.40858 -28.47408 -26.91519 -25.51379 -23.78414 -22.58472 -22.42604 -21.10012 -20.42786 -19.34083 -18.20667 -18.18078 -17.90601 -17.80785 -16.96644 -16.76029 -16.16513 -16.14454 -15.68904 -15.13028 -14.95417 -14.82969 -14.64511 -14.36203 -14.16456 -14.13707 -13.97644 -13.79817 -13.73441 -13.62876 -13.24397 -12.60700 -12.53138 -12.17520 -12.03817 -11.75854 -11.08808 -11.05497 -11.00148 -10.81809 -10.78850 -9.85558 -9.84143 -9.55771 -9.48101 -9.12107 -9.05873 -8.28682 -6.54316 -6.24835 -3.95957 0.17975 1.47209 1.48156 2.27402 2.53096 2.97639 3.00509 3.15591 3.20629 3.26749 3.30815 3.38485 3.68591 3.83049 4.12605 4.16218 4.16392 4.17702 4.35224 4.68334 4.84151 4.85989 5.03188 5.07126 5.10619 5.11223 5.47445 5.50579 5.54035 5.59392 5.74345 5.83139 5.97023 6.08475 6.40835 6.78016 7.41513 7.53468 7.57048 8.32129 8.47279 9.20692 10.82573 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.027190 B = 0.001406 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.538234 B =19911.417833 C =20750.555657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.535 3.465 12 O -0.515 6.515 13 N -0.737 5.737 14 C 0.110 3.890 15 C 0.107 3.893 16 N -0.713 5.713 17 C 0.605 3.395 18 O -0.509 6.509 19 C -0.047 4.047 20 C -0.121 4.121 21 C -0.158 4.158 22 C -0.076 4.076 23 C 0.360 3.640 24 F -0.182 7.182 25 F -0.181 7.181 26 O -0.146 6.146 27 H 0.269 0.731 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.402 0.598 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.410 0.590 36 H 0.171 0.829 37 H 0.166 0.834 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.336 -31.691 -0.010 32.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.389 6.389 13 N -0.393 5.393 14 C -0.015 4.015 15 C -0.016 4.016 16 N -0.364 5.364 17 C 0.390 3.610 18 O -0.386 6.386 19 C -0.100 4.100 20 C -0.142 4.142 21 C -0.177 4.177 22 C -0.129 4.129 23 C 0.306 3.694 24 F -0.163 7.163 25 F -0.162 7.162 26 O -0.042 6.042 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.236 0.764 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.246 0.754 36 H 0.188 0.812 37 H 0.184 0.816 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.761 -31.563 -0.008 31.920 hybrid contribution 2.131 0.961 -0.009 2.338 sum 6.891 -30.601 -0.017 31.368 Atomic orbital electron populations 1.70015 1.05965 1.27505 1.46787 1.24992 0.95032 0.99054 0.94470 0.86158 0.79410 0.81510 0.78370 1.20251 1.20737 1.19681 1.22865 0.94936 0.91591 1.59081 0.90859 1.85399 1.04809 0.96388 1.96746 1.23532 1.06715 0.95021 1.05146 1.20338 0.86418 0.86218 0.74934 1.90713 1.15343 1.85531 1.47283 1.45795 1.10304 1.04740 1.78442 1.21306 0.95355 0.81416 1.03399 1.21586 0.96676 0.79429 1.03934 1.45678 1.10576 1.05792 1.74389 1.16403 0.85899 0.81392 0.77273 1.90942 1.13920 1.83719 1.50005 1.22254 0.80600 0.95766 1.11387 1.22060 1.01866 0.89675 1.00588 1.21763 0.90898 1.01534 1.03527 1.22914 0.97610 0.81912 1.10469 1.19117 0.94226 0.84106 0.71994 1.93091 1.97084 1.75565 1.50516 1.93090 1.97077 1.75460 1.50622 1.83954 1.27778 1.21892 1.70535 0.92151 0.89015 0.89020 0.76411 0.90747 0.90758 0.89966 0.89976 0.75442 0.81173 0.81650 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -15.04 9.50 30.94 0.29 -14.74 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -2.95 6.16 36.00 0.22 -2.73 16 11 C 0.53 9.31 7.85 -10.99 -0.09 9.22 16 12 O -0.52 -11.06 15.86 5.56 0.09 -10.97 16 13 N -0.74 -8.62 5.56 -60.30 -0.33 -8.96 16 14 C 0.11 1.04 5.79 -4.05 -0.02 1.02 16 15 C 0.11 0.81 5.79 -4.05 -0.02 0.78 16 16 N -0.71 -5.16 5.55 -61.62 -0.34 -5.50 16 17 C 0.61 5.51 7.79 -12.86 -0.10 5.41 16 18 O -0.51 -6.12 16.87 5.19 0.09 -6.03 16 19 C -0.05 -0.38 7.13 -36.80 -0.26 -0.64 16 20 C -0.12 -0.86 10.62 -39.39 -0.42 -1.28 16 21 C -0.16 -0.96 10.77 -39.89 -0.43 -1.39 16 22 C -0.08 -0.47 6.75 -35.41 -0.24 -0.71 16 23 C 0.36 1.58 5.76 36.01 0.21 1.79 16 24 F -0.18 -1.07 17.32 2.25 0.04 -1.03 16 25 F -0.18 -1.07 17.32 2.25 0.04 -1.03 16 26 O -0.15 -1.01 10.40 5.00 0.05 -0.96 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 29 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 30 H 0.40 3.53 8.47 -40.82 -0.35 3.18 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.41 2.24 8.23 -40.82 -0.34 1.91 16 36 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 37 H 0.17 0.68 8.06 -52.48 -0.42 0.25 16 38 H 0.14 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 368.86 15.07 5.56 5.56 Total: -1.00 -36.50 368.86 -6.30 -42.80 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -4.03 Total: 0.21 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.96 Total: -1.28 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.06 Total: -39.56 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.23 Total: -17.96 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.08 Total: -2.07 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.50 -6.30 -42.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736672717.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.865 kcal (2) G-P(sol) polarization free energy of solvation -36.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds