Wall clock time and date at job start Wed Apr 1 2020 04:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86807 * 119.99903 * 2 1 4 4 H 1.48499 * 109.47285 * 270.00361 * 3 2 1 5 5 H 1.48500 * 109.46854 * 30.00538 * 3 2 1 6 6 H 1.48491 * 109.46829 * 150.00046 * 3 2 1 7 7 C 1.38794 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99725 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.81010 * 99.99881 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46757 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00486 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99816 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00189 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47442 * 180.02562 * 14 13 11 16 16 N 1.46497 * 109.47442 * 180.02562 * 15 14 13 17 17 C 1.34776 * 120.00189 * 179.97438 * 16 15 14 18 18 O 1.21704 * 119.99998 * 0.02562 * 17 16 15 19 19 C 1.46653 * 120.00321 * 180.02562 * 17 16 15 20 20 C 1.36544 * 125.98987 * 180.02562 * 19 17 16 21 21 C 1.40365 * 106.70793 * 180.02562 * 20 19 17 22 22 C 1.35130 * 107.11495 * 359.97438 * 21 20 19 23 23 C 1.50706 * 125.61365 * 180.02562 * 22 21 20 24 24 F 1.39897 * 109.47068 * 299.99651 * 23 22 21 25 25 F 1.39895 * 109.47042 * 59.99960 * 23 22 21 26 26 O 1.33928 * 108.76701 * 0.26306 * 22 21 20 27 27 H 0.97007 * 120.00122 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46735 * 60.00660 * 10 9 7 29 29 H 1.08999 * 109.47163 * 300.00191 * 10 9 7 30 30 H 0.97004 * 119.99955 * 0.02562 * 13 11 10 31 31 H 1.09005 * 109.47123 * 60.00454 * 14 13 11 32 32 H 1.08999 * 109.47235 * 300.00206 * 14 13 11 33 33 H 1.09006 * 109.47242 * 60.00189 * 15 14 13 34 34 H 1.09006 * 109.47496 * 300.00508 * 15 14 13 35 35 H 0.97000 * 120.00405 * 0.02562 * 16 15 14 36 36 H 1.07994 * 126.64880 * 359.97438 * 20 19 17 37 37 H 1.08006 * 126.44356 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.46953 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 16 1.1292 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9873 -5.3026 -0.0012 12 8 0.7911 -5.5023 -0.0021 13 7 2.8441 -6.3431 -0.0018 14 6 2.3304 -7.7150 -0.0019 15 6 3.5024 -8.6985 -0.0020 16 7 2.9887 -10.0704 -0.0026 17 6 3.8454 -11.1108 -0.0034 18 8 5.0459 -10.9106 -0.0030 19 6 3.3312 -12.4843 -0.0046 20 6 4.0845 -13.6231 -0.0050 21 6 3.1859 -14.7014 -0.0068 22 6 1.9392 -14.1800 -0.0069 23 6 0.6569 -14.9718 -0.0081 24 9 0.6070 -15.7770 -1.1511 25 9 0.6061 -15.7788 1.1334 26 8 2.0309 -12.8439 -0.0111 27 1 -0.4851 0.8401 -0.0004 28 1 3.1244 -3.7313 0.8895 29 1 3.1245 -3.7313 -0.8905 30 1 3.8009 -6.1834 -0.0015 31 1 1.7214 -7.8749 -0.8917 32 1 1.7222 -7.8753 0.8883 33 1 4.1111 -8.5385 0.8880 34 1 4.1111 -8.5384 -0.8920 35 1 2.0319 -10.2301 -0.0033 36 1 5.1628 -13.6827 -0.0048 37 1 3.4426 -15.7505 -0.0072 38 1 -0.1922 -14.2883 -0.0075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001736672717.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:57 Heat of formation + Delta-G solvation = -182.157108 kcal Electronic energy + Delta-G solvation = -25717.388381 eV Core-core repulsion = 21129.781166 eV Total energy + Delta-G solvation = -4587.607215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.079 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.18983 -48.20204 -43.99182 -40.92433 -40.46636 -37.11912 -35.24108 -34.57635 -34.39110 -32.55585 -31.57528 -29.50247 -27.71417 -27.41226 -24.48612 -23.23516 -22.94420 -21.96926 -21.43296 -20.00748 -19.75010 -18.61351 -18.60055 -18.28110 -17.94245 -17.52570 -17.19882 -16.99335 -16.87379 -16.84581 -16.19131 -15.72861 -15.58024 -15.16500 -15.03446 -14.84745 -14.70679 -14.55208 -14.44132 -14.29442 -14.26868 -14.05920 -13.70664 -13.15737 -12.94424 -12.94016 -12.85583 -12.60001 -12.40448 -11.77322 -11.70692 -11.32221 -11.13624 -11.02656 -10.51490 -10.27002 -10.19246 -10.01125 -8.65584 -8.34159 -6.11864 -0.38012 0.95997 0.96820 1.24921 1.43191 1.44428 1.55215 1.58932 1.74444 1.88678 2.27797 2.41798 2.75959 3.00300 3.02464 3.32679 3.46982 3.56071 3.64752 3.77428 3.80181 3.97961 4.00304 4.31268 4.32447 4.36560 4.37552 4.53893 4.64846 4.77868 4.79799 5.01985 5.06042 5.34164 5.43068 5.44219 6.17653 6.20595 6.44551 6.77521 7.07619 7.20027 8.74923 Molecular weight = 348.08amu Principal moments of inertia in cm(-1) A = 0.027190 B = 0.001406 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.538234 B =19911.417833 C =20750.555657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.131 4.131 11 C 0.538 3.462 12 O -0.562 6.562 13 N -0.711 5.711 14 C 0.114 3.886 15 C 0.118 3.882 16 N -0.704 5.704 17 C 0.608 3.392 18 O -0.544 6.544 19 C -0.067 4.067 20 C -0.122 4.122 21 C -0.166 4.166 22 C -0.077 4.077 23 C 0.361 3.639 24 F -0.190 7.190 25 F -0.190 7.190 26 O -0.145 6.145 27 H 0.271 0.729 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.420 0.580 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.419 0.581 36 H 0.178 0.822 37 H 0.183 0.817 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.899 -32.390 -0.010 33.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.102 0.898 9 S 0.076 5.924 10 C -0.282 4.282 11 C 0.323 3.677 12 O -0.440 6.440 13 N -0.366 5.366 14 C -0.011 4.011 15 C -0.006 4.006 16 N -0.355 5.355 17 C 0.394 3.606 18 O -0.423 6.423 19 C -0.119 4.119 20 C -0.142 4.142 21 C -0.185 4.185 22 C -0.130 4.130 23 C 0.307 3.693 24 F -0.171 7.171 25 F -0.171 7.171 26 O -0.041 6.041 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.257 0.743 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.256 0.744 36 H 0.195 0.805 37 H 0.201 0.799 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.355 -32.299 -0.008 32.918 hybrid contribution 1.678 0.994 -0.010 1.951 sum 8.034 -31.304 -0.018 32.319 Atomic orbital electron populations 1.70178 1.07943 1.28589 1.48025 1.26105 0.95946 1.03271 0.93757 0.84965 0.78213 0.76119 0.78760 1.19362 1.20379 1.18224 1.23217 0.95399 0.92052 1.58828 0.89848 1.85554 1.10533 0.99223 1.97068 1.23380 1.03610 0.94184 1.07058 1.20000 0.86120 0.86555 0.74975 1.90704 1.17328 1.86022 1.49949 1.45475 1.10650 1.04542 1.75956 1.21370 0.96099 0.80183 1.03407 1.21454 0.95659 0.78972 1.04505 1.45593 1.10995 1.05393 1.73546 1.16476 0.85524 0.81948 0.76681 1.90919 1.15230 1.84309 1.51874 1.22092 0.81208 0.95487 1.13150 1.22293 1.02464 0.89802 0.99661 1.22051 0.90772 1.02268 1.03384 1.23352 0.98553 0.81714 1.09383 1.19468 0.94547 0.84025 0.71230 1.93073 1.97082 1.75911 1.51044 1.93073 1.97075 1.75808 1.51146 1.83935 1.27225 1.22322 1.70619 0.92011 0.87001 0.86987 0.74286 0.90802 0.90810 0.89427 0.89440 0.74352 0.80500 0.79932 0.81035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.26 13.22 21.65 0.29 -54.98 16 2 C 0.01 0.79 5.49 84.86 0.47 1.25 16 3 Si 1.00 42.98 29.55 68.60 2.03 45.01 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 7 C -0.55 -30.67 9.50 67.95 0.65 -30.02 16 8 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 9 S -0.15 -8.15 20.57 -56.49 -1.16 -9.31 16 10 C -0.13 -4.88 6.16 71.23 0.44 -4.45 16 11 C 0.54 18.14 7.85 87.66 0.69 18.83 16 12 O -0.56 -24.28 15.86 -3.04 -0.05 -24.33 16 13 N -0.71 -15.08 5.56 -463.07 -2.57 -17.65 16 14 C 0.11 1.94 5.79 86.38 0.50 2.44 16 15 C 0.12 1.53 5.79 86.38 0.50 2.03 16 16 N -0.70 -9.14 5.55 -467.09 -2.59 -11.73 16 17 C 0.61 10.49 7.79 86.44 0.67 11.16 16 18 O -0.54 -12.72 16.87 -4.36 -0.07 -12.79 16 19 C -0.07 -1.00 7.13 24.07 0.17 -0.83 16 20 C -0.12 -1.62 10.62 22.39 0.24 -1.38 16 21 C -0.17 -1.80 10.77 22.07 0.24 -1.56 16 22 C -0.08 -0.84 6.75 24.97 0.17 -0.67 16 23 C 0.36 2.50 5.76 71.24 0.41 2.91 16 24 F -0.19 -1.96 17.32 44.97 0.78 -1.18 16 25 F -0.19 -1.95 17.32 44.97 0.78 -1.18 16 26 O -0.15 -1.82 10.40 -5.02 -0.05 -1.87 16 27 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 28 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 29 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 30 H 0.42 6.08 8.47 -92.71 -0.79 5.29 16 31 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.42 3.94 8.23 -92.71 -0.76 3.18 16 36 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 38 H 0.17 -0.02 8.14 -2.39 -0.02 -0.04 16 Total: -1.00 -80.97 368.86 2.10 -78.86 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -0.40 Total: 11.42 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 5.14 Total: -0.28 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -4.88 Total: -84.36 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -0.17 Total: -38.99 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 1.56 Total: -2.35 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -8.15 SS G_CDS: -1.16 Total: -9.31 kcal Total: -80.97 2.10 -78.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736672717.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.294 kcal (2) G-P(sol) polarization free energy of solvation -80.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds