Wall clock time and date at job start Wed Apr 1 2020 05:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47364 * 335.42997 * 3 2 1 5 5 N 1.46500 * 109.47157 * 180.02562 * 4 3 2 6 6 C 1.46493 * 120.00083 * 270.00026 * 5 4 3 7 7 C 1.50696 * 109.47152 * 269.99816 * 6 5 4 8 8 H 1.08002 * 120.00200 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00113 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99917 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00011 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.46818 * 89.99951 * 11 9 7 13 13 H 1.48501 * 109.47228 * 209.99719 * 11 9 7 14 14 H 1.48499 * 109.47136 * 330.00093 * 11 9 7 15 15 C 1.34780 * 119.99710 * 89.99887 * 5 4 3 16 16 O 1.21285 * 119.99806 * 179.97438 * 15 5 4 17 17 C 1.50701 * 120.00119 * 0.02562 * 15 5 4 18 18 O 1.42896 * 109.46890 * 179.97438 * 17 15 5 19 19 C 1.34974 * 116.99910 * 180.02562 * 18 17 15 20 20 O 1.21693 * 119.99968 * 359.97438 * 19 18 17 21 21 C 1.41407 * 120.00095 * 180.27418 * 19 18 17 22 22 C 1.35375 * 120.00263 * 179.72522 * 21 19 18 23 23 C 1.46623 * 120.00095 * 180.02562 * 22 21 19 24 24 C 1.44546 * 123.50505 * 179.72716 * 23 22 21 25 25 C 1.32728 * 113.09126 * 179.76175 * 24 23 22 26 26 S 1.75484 * 110.65329 * 0.48348 * 25 24 23 27 27 C 1.36343 * 123.50968 * 0.02562 * 23 22 21 28 28 H 1.09003 * 109.47064 * 215.42757 * 3 2 1 29 29 H 1.09000 * 109.47229 * 95.43222 * 3 2 1 30 30 H 1.09003 * 109.47225 * 59.99859 * 4 3 2 31 31 H 1.09000 * 109.47131 * 300.00285 * 4 3 2 32 32 H 1.08994 * 109.47289 * 30.00052 * 6 5 4 33 33 H 1.08997 * 109.47287 * 149.99864 * 6 5 4 34 34 H 0.97004 * 119.99397 * 179.97438 * 10 9 7 35 35 H 1.08998 * 109.47259 * 59.99634 * 17 15 5 36 36 H 1.08996 * 109.46995 * 299.99687 * 17 15 5 37 37 H 1.08001 * 119.99649 * 359.71886 * 21 19 18 38 38 H 1.08002 * 119.99558 * 359.97438 * 22 21 19 39 39 H 1.07994 * 123.45809 * 359.97438 * 24 23 22 40 40 H 1.08006 * 124.67398 * 180.19785 * 25 24 23 41 41 H 1.08001 * 124.60568 * 359.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.3110 0.5998 5 7 4.5836 -1.3100 0.6003 6 6 5.3169 -1.8369 -0.5533 7 6 5.5690 -3.3097 -0.3583 8 1 5.2178 -3.8041 0.5354 9 6 6.2472 -4.0265 -1.3212 10 7 6.4667 -5.3121 -1.1512 11 14 6.8541 -3.1718 -2.8674 12 1 8.2272 -2.6540 -2.6400 13 1 6.8701 -4.1391 -3.9940 14 1 5.9476 -2.0427 -3.1971 15 6 5.2568 -0.8243 1.6622 16 8 6.4696 -0.8240 1.6629 17 6 4.5024 -0.2829 2.8492 18 8 5.4304 0.1688 3.8375 19 6 4.9137 0.6859 4.9722 20 8 3.7072 0.7514 5.1168 21 6 5.7744 1.1575 5.9902 22 6 5.2562 1.6813 7.1259 23 6 6.1487 2.1708 8.1813 24 6 5.6780 2.7485 9.4199 25 6 6.6629 3.1177 10.2294 26 16 8.2230 2.7837 9.4985 27 6 7.5088 2.1337 8.0941 28 1 2.9710 0.8382 0.5957 29 1 2.9713 0.0981 -1.0230 30 1 2.7557 -2.1485 0.0041 31 1 2.7553 -1.4084 1.6228 32 1 4.7281 -1.6857 -1.4580 33 1 6.2690 -1.3147 -0.6480 34 1 6.9435 -5.8164 -1.8289 35 1 3.8764 -1.0690 3.2713 36 1 3.8751 0.5500 2.5318 37 1 6.8452 1.0997 5.8618 38 1 4.1854 1.7393 7.2542 39 1 4.6323 2.8645 9.6632 40 1 6.5235 3.5665 11.2019 41 1 8.0589 1.7448 7.2499 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028312428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:49 Heat of formation + Delta-G solvation = -34.137644 kcal Electronic energy + Delta-G solvation = -26186.224158 eV Core-core repulsion = 22159.265078 eV Total energy + Delta-G solvation = -4026.959079 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.77575 -39.32746 -38.34140 -37.00127 -36.52698 -35.36235 -33.59137 -32.86350 -31.09472 -29.98734 -29.25480 -27.40891 -25.88958 -24.13958 -23.17754 -22.18798 -20.41018 -19.13239 -18.87372 -18.67766 -17.84118 -17.57065 -16.91787 -16.68985 -16.62740 -16.18280 -15.63624 -15.39534 -14.80474 -14.66646 -14.12812 -13.93295 -13.77898 -13.70272 -13.55839 -13.08388 -13.01963 -12.79093 -12.70807 -12.53656 -12.50397 -12.32240 -12.10573 -11.87116 -11.63965 -11.27574 -11.13514 -11.03518 -10.74560 -10.66357 -10.61564 -10.59816 -10.25399 -9.63467 -9.39023 -9.23669 -8.65200 -8.43939 -8.02649 -6.14534 -4.14838 0.02636 0.97507 1.14638 1.53474 2.24915 2.48853 2.67630 2.76017 3.00261 3.07239 3.24824 3.29969 3.33035 3.56394 4.06377 4.29095 4.33539 4.52837 4.65875 4.73123 4.83297 4.87417 4.96293 5.05206 5.10741 5.12041 5.18170 5.21203 5.26210 5.38239 5.50998 5.67718 5.78103 5.90114 5.96453 6.07125 6.29877 6.52521 6.79585 7.07786 7.50408 7.52177 7.66651 7.92585 8.37105 8.67618 8.88949 9.44135 10.98553 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.011548 B = 0.002098 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.063950 B =13344.283014 C =15297.520249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.215 3.785 3 C -0.051 4.051 4 C 0.112 3.888 5 N -0.588 5.588 6 C 0.216 3.784 7 C -0.534 4.534 8 H 0.076 0.924 9 C 0.073 3.927 10 N -0.894 5.894 11 Si 0.876 3.124 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.512 3.488 16 O -0.509 6.509 17 C 0.047 3.953 18 O -0.322 6.322 19 C 0.503 3.497 20 O -0.519 6.519 21 C -0.203 4.203 22 C 0.029 3.971 23 C -0.110 4.110 24 C -0.109 4.109 25 C -0.235 4.235 26 S 0.181 5.819 27 C -0.220 4.220 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.036 0.964 33 H 0.041 0.959 34 H 0.265 0.735 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.151 0.849 40 H 0.168 0.832 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.527 18.503 19.158 26.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.117 5.117 2 C -0.103 4.103 3 C -0.093 4.093 4 C -0.014 4.014 5 N -0.321 5.321 6 C 0.096 3.904 7 C -0.572 4.572 8 H 0.094 0.906 9 C -0.129 4.129 10 N -0.532 5.532 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.189 1.189 15 C 0.297 3.703 16 O -0.383 6.383 17 C -0.031 4.031 18 O -0.237 6.237 19 C 0.351 3.649 20 O -0.411 6.411 21 C -0.224 4.224 22 C 0.008 3.992 23 C -0.124 4.124 24 C -0.138 4.138 25 C -0.370 4.370 26 S 0.448 5.552 27 C -0.357 4.357 28 H 0.125 0.875 29 H 0.136 0.864 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.168 0.832 40 H 0.185 0.815 41 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.285 18.566 19.568 26.976 hybrid contribution -0.877 -0.100 -1.444 1.693 sum -1.163 18.466 18.124 25.900 Atomic orbital electron populations 1.81223 1.12974 1.08480 1.09003 1.28988 0.95001 0.93258 0.93062 1.19881 0.81674 1.01670 1.06040 1.21428 0.81433 0.96163 1.02365 1.47799 1.05118 1.60508 1.18645 1.19780 0.92580 0.95553 0.82439 1.21291 1.37442 0.91462 1.07050 0.90567 1.24861 0.95163 0.94731 0.98194 1.69896 1.41091 1.07063 1.35146 0.86866 0.80190 0.79666 0.83031 1.19854 1.21084 1.18943 1.19780 0.88128 0.79161 0.83217 1.90737 1.13321 1.54695 1.79519 1.22535 0.91554 1.00853 0.88178 1.86275 1.39534 1.71704 1.26186 1.19858 0.87628 0.75363 0.82061 1.90897 1.16366 1.53827 1.79986 1.21159 1.01009 1.06416 0.93795 1.22058 0.99595 0.88116 0.89413 1.19316 0.91895 1.05219 0.95944 1.21330 1.00645 0.99403 0.92388 1.25523 0.96091 1.10125 1.05258 1.83173 1.08109 1.56171 1.07785 1.25852 0.98391 1.06628 1.04801 0.87534 0.86423 0.87970 0.90218 0.94593 0.94059 0.92458 0.88517 0.88872 0.84194 0.84042 0.83155 0.81491 0.80845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.42 18.54 42.15 0.78 -5.64 16 2 C 0.22 2.53 15.43 -20.76 -0.32 2.21 16 3 C -0.05 -0.50 6.03 -29.52 -0.18 -0.67 16 4 C 0.11 1.43 5.17 -4.04 -0.02 1.41 16 5 N -0.59 -10.29 2.46 -175.07 -0.43 -10.72 16 6 C 0.22 4.67 4.23 -5.20 -0.02 4.65 16 7 C -0.53 -14.29 9.94 -34.44 -0.34 -14.63 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 9 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 10 N -0.89 -26.61 13.96 55.43 0.77 -25.83 16 11 Si 0.88 20.35 27.47 -169.99 -4.67 15.69 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 14 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 15 C 0.51 9.39 7.75 -10.98 -0.09 9.31 16 16 O -0.51 -11.72 16.08 -14.36 -0.23 -11.95 16 17 C 0.05 0.67 4.41 36.01 0.16 0.83 16 18 O -0.32 -4.96 9.64 -48.01 -0.46 -5.42 16 19 C 0.50 6.74 7.68 31.94 0.25 6.99 16 20 O -0.52 -7.66 15.88 -19.41 -0.31 -7.96 16 21 C -0.20 -2.11 9.39 -39.40 -0.37 -2.48 16 22 C 0.03 0.26 9.57 -37.22 -0.36 -0.10 16 23 C -0.11 -0.86 5.97 -104.71 -0.62 -1.49 16 24 C -0.11 -0.70 10.38 -38.98 -0.40 -1.10 16 25 C -0.24 -1.29 11.11 28.85 0.32 -0.97 16 26 S 0.18 1.03 23.02 -107.50 -2.47 -1.44 16 27 C -0.22 -1.58 10.26 30.05 0.31 -1.27 16 28 H 0.11 0.83 7.22 -51.93 -0.38 0.46 16 29 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.10 1.37 8.07 -51.93 -0.42 0.95 16 31 H 0.08 0.87 6.44 -51.93 -0.33 0.54 16 32 H 0.04 0.71 7.13 -51.93 -0.37 0.34 16 33 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.10 1.28 7.39 -51.93 -0.38 0.89 16 36 H 0.09 1.06 7.17 -51.93 -0.37 0.69 16 37 H 0.14 1.27 6.53 -52.49 -0.34 0.92 16 38 H 0.14 1.19 7.45 -52.49 -0.39 0.80 16 39 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 40 H 0.17 0.54 8.06 -52.48 -0.42 0.11 16 41 H 0.17 1.07 6.81 -52.49 -0.36 0.71 16 LS Contribution 382.26 15.07 5.76 5.76 Total: -1.00 -36.00 382.26 -7.61 -43.60 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -4.56 Total: -0.70 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -1.79 Total: 4.62 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 1.13 Total: -42.20 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -1.00 Total: -25.34 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.69 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.47 Total: -1.44 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.00 -7.61 -43.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028312428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.467 kcal (2) G-P(sol) polarization free energy of solvation -35.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds