Wall clock time and date at job start Wed Apr 1 2020 05:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32568 * 121.64592 * 2 1 4 4 S 1.77229 * 105.31719 * 180.19219 * 3 2 1 5 5 C 1.72206 * 94.85053 * 359.75842 * 4 3 2 6 6 O 1.21823 * 127.06316 * 180.02562 * 5 4 3 7 7 N 1.34247 * 105.88286 * 0.02562 * 5 4 3 8 8 C 1.46497 * 121.37960 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46961 * 90.02544 * 8 7 5 10 10 C 1.50712 * 109.46921 * 179.97438 * 9 8 7 11 11 O 1.21286 * 119.99640 * 359.97438 * 10 9 8 12 12 N 1.34771 * 119.99516 * 179.97438 * 10 9 8 13 13 C 1.39925 * 119.99651 * 175.48986 * 12 10 9 14 14 C 1.38967 * 120.03558 * 214.85052 * 13 12 10 15 15 C 1.38158 * 120.06417 * 179.72107 * 14 13 12 16 16 C 1.38179 * 120.14028 * 0.55349 * 15 14 13 17 17 C 1.38907 * 120.06819 * 359.72164 * 16 15 14 18 18 O 1.35749 * 120.03423 * 179.97438 * 17 16 15 19 19 C 1.34834 * 116.99941 * 5.36835 * 18 17 16 20 20 H 1.08005 * 119.99768 * 354.95779 * 19 18 17 21 21 C 1.38648 * 120.00265 * 174.96503 * 19 18 17 22 22 N 1.31557 * 119.99837 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00238 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47276 * 59.99623 * 23 21 19 25 25 H 1.48503 * 109.47574 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46993 * 299.99962 * 23 21 19 27 27 C 1.38711 * 120.03592 * 35.12314 * 13 12 10 28 28 H 1.08995 * 109.47396 * 270.24794 * 1 2 3 29 29 H 1.09001 * 109.46853 * 30.25233 * 1 2 3 30 30 H 1.08998 * 109.46928 * 150.24754 * 1 2 3 31 31 H 1.07994 * 127.33745 * 359.92628 * 3 2 1 32 32 H 1.09000 * 109.47469 * 330.02761 * 8 7 5 33 33 H 1.09007 * 109.47469 * 210.02199 * 8 7 5 34 34 H 1.09000 * 109.47309 * 60.00116 * 9 8 7 35 35 H 1.08997 * 109.47114 * 299.99649 * 9 8 7 36 36 H 0.97004 * 120.00716 * 355.49487 * 12 10 9 37 37 H 1.07994 * 119.97008 * 359.97438 * 14 13 12 38 38 H 1.07995 * 119.93494 * 180.25322 * 15 14 13 39 39 H 1.07995 * 119.96383 * 179.74701 * 16 15 14 40 40 H 0.96999 * 120.00107 * 180.02562 * 22 21 19 41 41 H 1.07999 * 120.07138 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2026 1.1286 0.0000 4 16 3.9034 0.6303 -0.0057 5 6 3.5607 -1.0573 -0.0005 6 8 4.3673 -1.9703 -0.0012 7 7 2.2222 -1.1604 0.0046 8 6 1.5577 -2.4660 0.0095 9 6 1.3311 -2.9174 1.4538 10 6 0.6469 -4.2603 1.4588 11 8 0.3677 -4.8025 0.4105 12 7 0.3454 -4.8585 2.6283 13 6 -0.3732 -6.0590 2.6351 14 6 -1.2820 -6.3199 3.6535 15 6 -1.9961 -7.5026 3.6578 16 6 -1.8009 -8.4345 2.6564 17 6 -0.8898 -8.1821 1.6387 18 8 -0.6982 -9.0984 0.6555 19 6 -1.5018 -10.1810 0.6627 20 1 -2.2001 -10.3298 1.4731 21 6 -1.4315 -11.1034 -0.3700 22 7 -0.5811 -10.9220 -1.3572 23 14 -2.5443 -12.6037 -0.3597 24 1 -3.9638 -12.1673 -0.3643 25 1 -2.2762 -13.4274 -1.5659 26 1 -2.2781 -13.4090 0.8593 27 6 -0.1751 -6.9926 1.6285 28 1 -0.3634 0.0044 1.0276 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3633 -0.8922 -0.5100 31 1 1.8153 2.1367 -0.0011 32 1 2.1844 -3.1947 -0.5048 33 1 0.5980 -2.3873 -0.5013 34 1 0.7044 -2.1889 1.9681 35 1 2.2907 -2.9963 1.9646 36 1 0.6265 -4.4567 3.4653 37 1 -1.4333 -5.5957 4.4402 38 1 -2.7048 -7.7014 4.4480 39 1 -2.3577 -9.3599 2.6647 40 1 -0.5322 -11.5671 -2.0800 41 1 0.5336 -6.7939 0.8380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049294779.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:06 Heat of formation + Delta-G solvation = -57.296052 kcal Electronic energy + Delta-G solvation = -26841.026252 eV Core-core repulsion = 22813.062948 eV Total energy + Delta-G solvation = -4027.963303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.21679 -41.50112 -40.34331 -38.74169 -38.26216 -35.60110 -34.54074 -34.27190 -32.36129 -31.19174 -30.26618 -28.89792 -27.35351 -26.13837 -24.51267 -23.65099 -23.00167 -21.63694 -21.24819 -19.99618 -19.21837 -19.06479 -18.61613 -17.67424 -17.40497 -17.08044 -16.88123 -16.73422 -16.21329 -16.00023 -15.85774 -15.54615 -15.28988 -15.16075 -14.65821 -14.58747 -14.40097 -14.28140 -14.20552 -13.80449 -13.59690 -13.22474 -13.13026 -12.98080 -12.66026 -12.45159 -12.37583 -12.29812 -12.17408 -12.06286 -11.49410 -11.31820 -11.21900 -10.87421 -10.77183 -10.60933 -9.36925 -8.97347 -8.89631 -8.47587 -6.17617 -0.14857 0.36738 0.39272 0.69428 0.85851 1.09925 1.33285 1.43970 1.51002 1.52426 1.59581 2.06160 2.19660 2.81610 3.16103 3.34566 3.51398 3.54759 3.65737 3.88430 4.13675 4.17057 4.27023 4.35688 4.40747 4.41121 4.53639 4.64246 4.69681 4.73766 4.78290 4.79280 5.01099 5.04767 5.10251 5.30933 5.39052 5.43883 5.62761 5.72873 5.73347 6.01794 6.18811 6.21491 6.39088 6.95862 7.10304 7.78756 8.76095 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.017635 B = 0.002069 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.385256 B =13530.990034 C =14336.133535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.090 3.910 3 C -0.219 4.219 4 S 0.002 5.998 5 C 0.457 3.543 6 O -0.524 6.524 7 N -0.528 5.528 8 C 0.114 3.886 9 C -0.134 4.134 10 C 0.510 3.490 11 O -0.562 6.562 12 N -0.652 5.652 13 C 0.182 3.818 14 C -0.200 4.200 15 C -0.049 4.049 16 C -0.255 4.255 17 C 0.124 3.876 18 O -0.236 6.236 19 C -0.414 4.414 20 H 0.107 0.893 21 C -0.028 4.028 22 N -0.926 5.926 23 Si 1.024 2.976 24 H -0.255 1.255 25 H -0.274 1.274 26 H -0.253 1.253 27 C -0.215 4.215 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.231 0.769 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.147 0.853 35 H 0.108 0.892 36 H 0.432 0.568 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.123 0.877 40 H 0.272 0.728 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.593 28.508 10.941 30.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.019 4.019 3 C -0.356 4.356 4 S 0.245 5.755 5 C 0.141 3.859 6 O -0.408 6.408 7 N -0.248 5.248 8 C -0.012 4.012 9 C -0.174 4.174 10 C 0.298 3.702 11 O -0.439 6.439 12 N -0.299 5.299 13 C 0.087 3.913 14 C -0.221 4.221 15 C -0.068 4.068 16 C -0.275 4.275 17 C 0.073 3.927 18 O -0.143 6.143 19 C -0.490 4.490 20 H 0.125 0.875 21 C -0.225 4.225 22 N -0.564 5.564 23 Si 0.842 3.158 24 H -0.179 1.179 25 H -0.199 1.199 26 H -0.178 1.178 27 C -0.236 4.236 28 H 0.124 0.876 29 H 0.133 0.867 30 H 0.090 0.910 31 H 0.247 0.753 32 H 0.087 0.913 33 H 0.135 0.865 34 H 0.165 0.835 35 H 0.126 0.874 36 H 0.273 0.727 37 H 0.185 0.815 38 H 0.178 0.822 39 H 0.141 0.859 40 H 0.081 0.919 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.143 28.203 9.806 29.859 hybrid contribution -0.750 -1.878 -0.393 2.060 sum -0.607 26.325 9.412 27.963 Atomic orbital electron populations 1.20987 0.84003 1.05550 1.05610 1.20018 0.97328 0.83828 1.00689 1.25450 0.90571 1.02698 1.16888 1.85197 1.11297 0.98763 1.80228 1.22108 0.84282 0.96522 0.83023 1.90967 1.50120 1.44384 1.55334 1.46156 1.05862 1.08450 1.64341 1.21536 0.99974 0.82315 0.97341 1.21867 1.03472 0.93367 0.98716 1.21179 0.78134 0.87713 0.83131 1.90840 1.53386 1.66504 1.33181 1.43264 1.54780 1.21489 1.10368 1.17324 0.93630 0.85031 0.95284 1.20909 0.99420 1.00396 1.01349 1.21062 0.97414 0.91902 0.96397 1.21344 1.04574 1.03371 0.98173 1.19714 0.94427 0.89372 0.89214 1.83960 1.55024 1.29890 1.45423 1.21881 1.18576 0.98616 1.09944 0.87541 1.26734 0.99341 1.02679 0.93758 1.70223 1.37039 1.37869 1.11275 0.84586 0.77448 0.74991 0.78757 1.17875 1.19851 1.17756 1.20199 1.06475 0.93247 1.03703 0.87554 0.86687 0.91045 0.75285 0.91264 0.86478 0.83536 0.87365 0.72748 0.81535 0.82181 0.85939 0.91906 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.41 9.70 71.24 0.69 0.28 16 2 C 0.09 0.95 6.59 40.71 0.27 1.21 16 3 C -0.22 -1.83 11.25 66.67 0.75 -1.08 16 4 S 0.00 0.03 22.97 -56.49 -1.30 -1.26 16 5 C 0.46 11.07 8.27 129.87 1.07 12.15 16 6 O -0.52 -17.52 17.55 -4.74 -0.08 -17.61 16 7 N -0.53 -9.55 2.60 -643.41 -1.68 -11.22 16 8 C 0.11 2.34 4.56 86.38 0.39 2.74 16 9 C -0.13 -2.22 6.03 29.85 0.18 -2.04 16 10 C 0.51 13.82 7.67 87.66 0.67 14.49 16 11 O -0.56 -22.25 13.42 -3.05 -0.04 -22.29 16 12 N -0.65 -15.85 5.34 -303.55 -1.62 -17.47 16 13 C 0.18 6.24 6.30 38.14 0.24 6.48 16 14 C -0.20 -5.59 9.96 22.43 0.22 -5.37 16 15 C -0.05 -1.56 10.03 22.24 0.22 -1.34 16 16 C -0.25 -11.09 9.17 22.42 0.21 -10.88 16 17 C 0.12 6.56 6.64 22.56 0.15 6.71 16 18 O -0.24 -15.21 9.76 -22.77 -0.22 -15.44 16 19 C -0.41 -25.08 9.49 67.92 0.64 -24.44 16 20 H 0.11 5.78 5.20 -2.91 -0.02 5.77 16 21 C -0.03 -1.68 5.49 84.83 0.47 -1.21 16 22 N -0.93 -59.88 13.67 21.61 0.30 -59.59 16 23 Si 1.02 44.09 29.55 68.60 2.03 46.12 16 24 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 27 C -0.21 -10.27 8.64 22.51 0.19 -10.07 16 28 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.11 -0.04 8.10 -2.39 -0.02 -0.05 16 30 H 0.07 0.49 6.18 -2.39 -0.01 0.47 16 31 H 0.23 0.08 8.06 -2.91 -0.02 0.06 16 32 H 0.07 1.97 7.76 -2.39 -0.02 1.95 16 33 H 0.12 2.13 6.07 -2.38 -0.01 2.12 16 34 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.43 5.97 8.82 -92.71 -0.82 5.16 16 37 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.12 5.35 5.63 -2.91 -0.02 5.33 16 40 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 41 H 0.10 5.35 6.23 -2.91 -0.02 5.34 16 Total: -1.00 -93.94 366.86 4.05 -89.89 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: 0.29 Total: 21.23 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 6.38 Total: -12.36 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -3.00 Total: -88.28 kcal Atomic # 8 Polarization: -54.99 SS G_CDS: -0.35 Total: -55.33 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -1.30 Total: -1.26 kcal Total: -93.94 4.05 -89.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049294779.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.599 kcal (2) G-P(sol) polarization free energy of solvation -93.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds